HHsearch alignment for GI: 255764488 and conserved domain: COG1291
>COG1291 MotA Flagellar motor component [Cell motility and secretion].
Probab=100.00 E-value=0 Score=521.03 Aligned_cols=262 Identities=39% Similarity=0.603 Sum_probs=252.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 96899999999999999997099811242489999999999999998589899999999999963578899666899999
Q gi|255764488|r 1 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLK 80 (290)
Q Consensus 1 l~tIiGlv~~~~~I~~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~ 80 (290)
T Consensus 3 m~tiiGlvl~~~~i~~G~i~~Gg~~~~l~~~~s~lII~gg~i~A~~~~~p~~~vk~~~k~~~~~F~--~~k~~~~~~li~ 80 (266)
T COG1291 3 MLTIIGLVLAFGSVLGGYILGGGSLGALIQPSSLLIIVGGGIGAFMVGNPGKVVKATPKALKEAFR--KPKKEDYVDLIA 80 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHEEECHHHHHHHHCCCHHHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_conf 788999999999999989726886235405123320302157898862868999999999999984--576202999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999974104744764207421145553235530620279999999999963789899999999999999999621
Q gi|255764488|r 81 LLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK 160 (290)
Q Consensus 81 ~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~ 160 (290)
T Consensus 81 ~l~~la~~~Rk~GllaLE~~~-----------------~~~~d~Fi~~glrliVdG~~-~~~I~~~me~Ei~~~ee~~~~ 142 (266)
T COG1291 81 LLYELAEKARKEGLLALEALA-----------------DEIEDPFIKDGLRLIVDGND-PEEIEALMEEEIETMEERHEK 142 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------HHCCCHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999870187799888-----------------62414589966798715898-899999999999999998753
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28999999999888889999999999996148978999866689999999999999999999999999999999999999
Q gi|255764488|r 161 PYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII 240 (290)
Q Consensus 161 ~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~ 240 (290)
T Consensus 143 ~a~~~~~~g~~aPa~GivgaV~GlI~~l~~l~~-p~~LG~~iA~Alv~T~~Gi~~ay~~~~P~a~kLk~~~~~e~~~~~~ 221 (266)
T COG1291 143 PAHAFTTAGDYAPAFGIVGAVMGLIHALGNLDD-PAELGALIAAALVGTLYGIFLAYGLFGPLANKLKQKSDEEVKLKEI 221 (266)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999988458266699999999999882799-7888889999999999999999897868899998888999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHHHC
Q ss_conf 9999999957999689999983119967683889999999702
Q gi|255764488|r 241 VKKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEIVAQEVLQY 283 (290)
Q Consensus 241 i~egi~~i~~g~~P~~~~e~l~~~lp~~~r~~~~e~~~~~~~~ 283 (290)
T Consensus 222 i~e~ll~i~~G~nP~i~~e~l~~~L~~~er~~~~e~e~~~~~~ 264 (266)
T COG1291 222 IIEGLLAIQNGENPRILEEKLRKFLSPKERPSFAELEEEVRGE 264 (266)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
T ss_conf 9999999954899488999988628912276568899986467