HHsearch alignment for GI: 255764488 and conserved domain: COG1291

>COG1291 MotA Flagellar motor component [Cell motility and secretion].
Probab=100.00  E-value=0  Score=521.03  Aligned_cols=262  Identities=39%  Similarity=0.603  Sum_probs=252.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             96899999999999999997099811242489999999999999998589899999999999963578899666899999
Q gi|255764488|r    1 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLK   80 (290)
Q Consensus         1 l~tIiGlv~~~~~I~~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~   80 (290)
T Consensus         3 m~tiiGlvl~~~~i~~G~i~~Gg~~~~l~~~~s~lII~gg~i~A~~~~~p~~~vk~~~k~~~~~F~--~~k~~~~~~li~   80 (266)
T COG1291           3 MLTIIGLVLAFGSVLGGYILGGGSLGALIQPSSLLIIVGGGIGAFMVGNPGKVVKATPKALKEAFR--KPKKEDYVDLIA   80 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHEEECHHHHHHHHCCCHHHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_conf             788999999999999989726886235405123320302157898862868999999999999984--576202999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999974104744764207421145553235530620279999999999963789899999999999999999621
Q gi|255764488|r   81 LLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK  160 (290)
Q Consensus        81 ~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~  160 (290)
T Consensus        81 ~l~~la~~~Rk~GllaLE~~~-----------------~~~~d~Fi~~glrliVdG~~-~~~I~~~me~Ei~~~ee~~~~  142 (266)
T COG1291          81 LLYELAEKARKEGLLALEALA-----------------DEIEDPFIKDGLRLIVDGND-PEEIEALMEEEIETMEERHEK  142 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----------------HHCCCHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999870187799888-----------------62414589966798715898-899999999999999998753


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             28999999999888889999999999996148978999866689999999999999999999999999999999999999
Q gi|255764488|r  161 PYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII  240 (290)
Q Consensus       161 ~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~  240 (290)
T Consensus       143 ~a~~~~~~g~~aPa~GivgaV~GlI~~l~~l~~-p~~LG~~iA~Alv~T~~Gi~~ay~~~~P~a~kLk~~~~~e~~~~~~  221 (266)
T COG1291         143 PAHAFTTAGDYAPAFGIVGAVMGLIHALGNLDD-PAELGALIAAALVGTLYGIFLAYGLFGPLANKLKQKSDEEVKLKEI  221 (266)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             899999988458266699999999999882799-7888889999999999999999897868899998888999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHHHC
Q ss_conf             9999999957999689999983119967683889999999702
Q gi|255764488|r  241 VKKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEIVAQEVLQY  283 (290)
Q Consensus       241 i~egi~~i~~g~~P~~~~e~l~~~lp~~~r~~~~e~~~~~~~~  283 (290)
T Consensus       222 i~e~ll~i~~G~nP~i~~e~l~~~L~~~er~~~~e~e~~~~~~  264 (266)
T COG1291         222 IIEGLLAIQNGENPRILEEKLRKFLSPKERPSFAELEEEVRGE  264 (266)
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
T ss_conf             9999999954899488999988628912276568899986467