HHsearch alignment for GI: 255764488 and conserved domain: PRK08990
>PRK08990 flagellar motor protein PomA; Reviewed.
Probab=100.00 E-value=0 Score=506.82 Aligned_cols=246 Identities=20% Similarity=0.318 Sum_probs=232.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 96899999999999999997099811242489999999999999998589899999999999963578899666899999
Q gi|255764488|r 1 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLK 80 (290)
Q Consensus 1 l~tIiGlv~~~~~I~~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~ 80 (290)
T Consensus 3 ~~tiiGli~~~~~i~~~~~-~gg~~~~f~~~~s~lIV~GGt~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~li~ 78 (253)
T PRK08990 3 LATLIGLIGAFAFVIMAMV-LGGGIGMFVDVPSILIVFGGSLFVVLMKFNLGQFFGAGKIAGKAFMFKIDK---PEDLIE 78 (253)
T ss_pred HHHHHHHHHHHHHHHHHHH-HCCCHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC---HHHHHH
T ss_conf 6899999999999999999-578679897513588779989999998487999999988999996167778---999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999974104744764207421145553235530620279999999999963789899999999999999999621
Q gi|255764488|r 81 LLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK 160 (290)
Q Consensus 81 ~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~ 160 (290)
T Consensus 79 ~l~~la~~aRk~GllaLE~~--~-----------------i~~~Fl~~gl~l~vDG~-~~e~i~~~L~~ei~~~~~r~~~ 138 (253)
T PRK08990 79 QSVEMADAARKGGFLALEEA--E-----------------ISNSFMQKGVDMLVDGH-DGDVVRAALEKDIALTEERHET 138 (253)
T ss_pred HHHHHHHHHHHCCHHHHHCC--C-----------------CCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999985672432025--6-----------------89889999999997699-9999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28999999999888889999999999996148978999866689999999999999999999999999999999999999
Q gi|255764488|r 161 PYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII 240 (290)
Q Consensus 161 ~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~ 240 (290)
T Consensus 139 ~~~v~~~~g~~aPafGmiGTviGLI~mL~~l~d-p~~iG~~mA~ALvtTlYGillAnl~~~PiA~KL~~~~~~e~~~~~~ 217 (253)
T PRK08990 139 GIGIFRAFGDVAPAMGMIGTLIGLVAMLSNMDD-PKSIGPAMAVALLTTLYGAVLANMVAIPIADKLSLRMGEEMLNRNL 217 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 678999999871688799999999999980699-9999988899999999999999999999999999899999999899
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCHHHCC
Q ss_conf 9999999957999689999983119967683
Q gi|255764488|r 241 VKKALIAYMNGAIPQVAIEYGRKVLPLSERP 271 (290)
Q Consensus 241 i~egi~~i~~g~~P~~~~e~l~~~lp~~~r~ 271 (290)
T Consensus 218 i~eGil~I~~g~nP~~i~~kL~syL~~~~r~ 248 (253)
T PRK08990 218 IMDAVLAIQDGQNPRVIEGFLKNYLAEKKRK 248 (253)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCHHHCC
T ss_conf 9999999877998799999999729914015