HHsearch alignment for GI: 255764488 and conserved domain: PRK09109
>PRK09109 motC flagellar motor protein; Reviewed.
Probab=100.00 E-value=0 Score=507.68 Aligned_cols=244 Identities=25% Similarity=0.378 Sum_probs=234.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 96899999999999999997099811242489999999999999998589899999999999963578899666899999
Q gi|255764488|r 1 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLK 80 (290)
Q Consensus 1 l~tIiGlv~~~~~I~~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~ 80 (290)
T Consensus 3 ~~tiiGlv~~~~~i~~g~~~~gg~~~~~~~~~s~lIV~GGt~~A~li~~p~~~~~~~~~~~~~~f~~~~~~---~~~~i~ 79 (246)
T PRK09109 3 VLSLIGLILAFVAIIGGNFLEGGHLGSLLNGPAALIVIGGTLGAVLLQTPLSVFKRAFKILRWVFFPPRSD---LEGGID 79 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC---HHHHHH
T ss_conf 78999999999999999998499738886455899999999999998088999999999999985688899---999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999974104744764207421145553235530620279999999999963789899999999999999999621
Q gi|255764488|r 81 LLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK 160 (290)
Q Consensus 81 ~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~ 160 (290)
T Consensus 80 ~l~~la~~aR~~GllaLE~~i~~~~d-----------------~Fl~~gl~l~vdg~-~~~~i~~~L~~ei~~~~~r~~~ 141 (246)
T PRK09109 80 RIVEWSMTARKEGLLGLEDVADREPD-----------------PFARKGLQLLVDGA-EPESIRSVLEVEIDTQEHRDLQ 141 (246)
T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCC-----------------HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999976453115666316688-----------------69998899985799-9999999999999999999982
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28999999999888889999999999996148978999866689999999999999999999999999999999999999
Q gi|255764488|r 161 PYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII 240 (290)
Q Consensus 161 ~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~ 240 (290)
T Consensus 142 ~~~~~~~~g~~aPafGmiGtviGLI~mL~~l~d-p~~lG~~mA~ALvtT~yGv~lAn~v~~PiA~kl~~~~~~e~~~~~~ 220 (246)
T PRK09109 142 AAKVFESMGGYAPTIGIIGAVMGLIHVMENLAD-PSQLGSGIAVAFVATIYGVASANLLFLPVANKLKSVIARQSRYREM 220 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 778999999872676499999999999880699-9999988799999999999999999988999999999999999899
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 99999999579996899999831199
Q gi|255764488|r 241 VKKALIAYMNGAIPQVAIEYGRKVLP 266 (290)
Q Consensus 241 i~egi~~i~~g~~P~~~~e~l~~~lp 266 (290)
T Consensus 221 i~egil~i~~g~~P~~i~~kL~s~L~ 246 (246)
T PRK09109 221 LVEGLVAIAEGENPRSIELKLQGYLH 246 (246)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 99999998689985999999987639