HHsearch alignment for GI: 255764488 and conserved domain: PRK09110
>PRK09110 flagellar motor protein MotA; Validated.
Probab=100.00 E-value=0 Score=605.52 Aligned_cols=282 Identities=40% Similarity=0.735 Sum_probs=278.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 96899999999999999997099811242489999999999999998589899999999999963578899666899999
Q gi|255764488|r 1 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLK 80 (290)
Q Consensus 1 l~tIiGlv~~~~~I~~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~ 80 (290)
T Consensus 1 M~~iiGlv~~~~~i~~g~~l~Gg~~~~~~~~~s~lIV~Ggtlga~li~~p~~~i~~~~~~~~~~f~~~~~~~~~~~e~i~ 80 (283)
T PRK09110 1 MLIIIGYIVVLGSVFGGYLLAGGHLGALIQPFELLIIGGAALGAFIVGNPGKAIKATLKALPKVFKGPKYKKADYMDLLA 80 (283)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 92099999999999999995489842884644799588789999999788999999999999995687898143899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999974104744764207421145553235530620279999999999963789899999999999999999621
Q gi|255764488|r 81 LLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK 160 (290)
Q Consensus 81 ~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~ 160 (290)
T Consensus 81 ~l~~la~~aRr~GllaLE~~ie~p~~s~if~~~p~~~~d~~~~~fi~dgl~l~vdg~~~~~~i~~iLe~ei~~~~~r~~~ 160 (283)
T PRK09110 81 LLYELLRKARQEGMMALEAHIENPEESPIFAKYPKILADHHLVEFICDYLRLMISGNMNPHEIEALMDEEIETHHHEAEV 160 (283)
T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHCHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999986249999877448421367772315531503789999878999658999899999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28999999999888889999999999996148978999866689999999999999999999999999999999999999
Q gi|255764488|r 161 PYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII 240 (290)
Q Consensus 161 ~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~ 240 (290)
T Consensus 161 ~~~~~~~~g~~aPa~GmiGtviGLI~~l~~l~~~p~~lG~~mAvALvtT~YGv~lAn~i~~PiA~kL~~~~~~e~~~~~~ 240 (283)
T PRK09110 161 PAHALQTVADALPAFGIVAAVLGVVKTMGSIDQPPAVLGALIGAALVGTFLGILLAYGFVGPLAAKLEQVVEEDTKMYQC 240 (283)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999987728889999999999998448998999889999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHHH
Q ss_conf 999999995799968999998311996768388999999970
Q gi|255764488|r 241 VKKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEIVAQEVLQ 282 (290)
Q Consensus 241 i~egi~~i~~g~~P~~~~e~l~~~lp~~~r~~~~e~~~~~~~ 282 (290)
T Consensus 241 i~eGilai~~G~nPrv~~E~lr~~lp~~~rps~~e~e~~~~~ 282 (283)
T PRK09110 241 IKVTLLASLNGYAPQIAVEFGRKTLPSTERPSFAELEEHVRG 282 (283)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHC
T ss_conf 999999985899949999998832891209999999998746