HHsearch alignment for GI: 255764488 and conserved domain: PRK12482
>PRK12482 flagellar motor protein MotA; Provisional.
Probab=100.00 E-value=0 Score=572.99 Aligned_cols=286 Identities=30% Similarity=0.576 Sum_probs=282.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 96899999999999999997099811242489999999999999998589899999999999963578899666899999
Q gi|255764488|r 1 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLK 80 (290)
Q Consensus 1 l~tIiGlv~~~~~I~~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~ 80 (290)
T Consensus 1 M~~iiGliv~~~~v~gg~~l~GG~l~~l~qp~e~lII~GgtigA~li~~p~~~lk~~~~~l~~~f~~~~~~~~~~~~ll~ 80 (287)
T PRK12482 1 MQKLFGLLVIMGCVFGGYLMSGGSLSSIWQPGEIIIIFGAGIGALILGNPKSVLKEMWHQIKGVIRRKEYGVEFQRQLLL 80 (287)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 92099999999999999997389725986888899999899999977087999999999999986376788678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999974104744764207421145553235530620279999999999963789899999999999999999621
Q gi|255764488|r 81 LLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK 160 (290)
Q Consensus 81 ~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~ 160 (290)
T Consensus 81 ll~~l~~~aRr~GllaLE~~ie~pe~s~iF~~~p~i~~d~~~~~fi~D~lrl~v~g~~~~~~i~~iLe~ei~~~~~~~~~ 160 (287)
T PRK12482 81 LLYELLEMVDEGGLKRLDQHIEIPENSSLFQKYPLILQDKHLITFISDNFRLMAMGKINQHELEGILEQELSAVEEELLQ 160 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998369999987607322277762504413504789998527887168989899999999999999999865
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28999999999888889999999999996148978999866689999999999999999999999999999999999999
Q gi|255764488|r 161 PYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII 240 (290)
Q Consensus 161 ~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~ 240 (290)
T Consensus 161 ~~~~~~~~g~~aPa~GIvgaVlGlI~~M~~l~~~pa~LG~~IA~ALVgTfyGi~lAy~~~~PiA~kLk~~~~~e~~~~~~ 240 (287)
T PRK12482 161 PSRSLQRIAEAMPGFGICAAVLGIIITMQSIDGSIAEIGLKVAAALVGTFLGVFICYCLMDPLSNAMEQEIKKELSLLEC 240 (287)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68999999865733369999999999998348999999999999999999999999998988999999999999899999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHHHCCCC
Q ss_conf 9999999957999689999983119967683889999999702434
Q gi|255764488|r 241 VKKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEIVAQEVLQYNHN 286 (290)
Q Consensus 241 i~egi~~i~~g~~P~~~~e~l~~~lp~~~r~~~~e~~~~~~~~~~~ 286 (290)
T Consensus 241 ik~~l~A~~~G~~P~~avE~gRk~i~~~~rPsf~ele~~~~~~~~~ 286 (287)
T PRK12482 241 VRTVLVAHVAGKPTLLAVDAGRKLLPLDNKPTFATLDSWINKMITA 286 (287)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9999999727999399999987118977798989999999986408