HHsearch alignment for GI: 255764488 and conserved domain: TIGR02796
>TIGR02796 tolQ protein TolQ; InterPro: IPR014163 TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses proton motive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this entry describes TolQ specifically, as found in tol-pal operons. A close homologue, excluded from this entry, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species..
Probab=98.85 E-value=4e-08 Score=70.83 Aligned_cols=108 Identities=15% Similarity=0.251 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999621289999999998888899999999999961489-----78999866689999999999999
Q gi|255764488|r 142 EIENLMDEEIDIILYEKLKPYHAISHMGESLPAIGIVGAILGIIKAMGNLSQ-----SPKILGTAIGVSLTGTLLGIILS 216 (290)
Q Consensus 142 ~i~~~L~~ei~~~~~~~~~~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d-----~p~~lG~~iA~ALitTlYGv~lA 216 (290)
T Consensus 106 ~~~Ram~~~~~rE~~~Le~~L~fLATvGS~sPfIGLFGTVWGIM~sF~~ig~~~~qatLA~VAPGIAEALiATAiGLfAA 185 (219)
T TIGR02796 106 RIDRAMRVALNRELEKLESGLPFLATVGSTSPFIGLFGTVWGIMHSFQAIGGSKNQATLAVVAPGIAEALIATAIGLFAA 185 (219)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999988614650322432226524433305478899998767643455541524789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999999999999999999957
Q gi|255764488|r 217 YSLCNPLTSQIKSTRLKQHRLYIIVKKALIAYMN 250 (290)
Q Consensus 217 n~i~~Pia~kl~~~~~~e~~~~~~i~egi~~i~~ 250 (290)
T Consensus 186 -IPAViAYN~f~~~~~~i~~~~e~F~~EF~~iL~ 218 (219)
T TIGR02796 186 -IPAVIAYNKFSTQVNKIEQRYENFADEFSSILQ 218 (219)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf -899999999999999999998889999997502