HHsearch alignment for GI: 255764488 and conserved domain: pfam01618
>pfam01618 MotA_ExbB MotA/TolQ/ExbB proton channel family. This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.
Probab=99.70 E-value=1.4e-15 Score=118.06 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHH
Q ss_conf 7999999999996378989999999999999999962128999999999888889999999999996148----978999
Q gi|255764488|r 123 TTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLKPYHAISHMGESLPAIGIVGAILGIIKAMGNLS----QSPKIL 198 (290)
Q Consensus 123 ~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~----d~p~~l 198 (290)
T Consensus 16 ~~~~~~~~~~~~~~~~~~e~i~~ame~~~~~e~~~le~~l~~L~ti~~~AP~lGLlGTV~Gmi~~F~~i~~~g~~~~~~~ 95 (139)
T pfam01618 16 LSFVRLGLAPLIERGAFKEFLRLALEEALDAELRKLERGLTILATIGSVAPFLGLLGTVWGIIHAFIHIGQTGQADPAVV 95 (139)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 89999870102354214899999999999999999984869999999894798999999999999998873567768888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86668999999999999999999999999999999999999999
Q gi|255764488|r 199 GTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYIIVK 242 (290)
Q Consensus 199 G~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~i~ 242 (290)
T Consensus 96 a~GI~~ALitTa~GL~vA-Ipa~i~yn~l~~r~~~~~~~~E~f~ 138 (139)
T pfam01618 96 APGISEALVATALGLFVA-IPALLAYNVLKRKVEQLSLKIEAFA 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 769999999999999999-9999999999999999999998760