RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|255764488|ref|YP_003065099.2| flagellar motor protein MotA
[Candidatus Liberibacter asiaticus str. psy62]
(290 letters)
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} (A:1-63,A:202-257,A:473-536)
Length = 183
Score = 30.9 bits (69), Expect = 0.19
Identities = 15/112 (13%), Positives = 27/112 (24%), Gaps = 11/112 (9%)
Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSR 94
++ G G G +A L + V +LE + L + +++K
Sbjct: 29 YVIVGGGTSGCPLAATLS--EKYKVLVLERGSL--PTAYNKGNSNNLRVGVHASVEKIIF 84
Query: 95 NETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENL 146
+ P I + R I L
Sbjct: 85 SNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVS-------ADFRVTGINAL 129
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal
protein; HET: TRP; 1.70A {Streptomyces rugosporus} PDB:
2wet_A* 2wes_A* (A:1-40,A:172-247,A:329-471)
Length = 259
Score = 29.3 bits (65), Expect = 0.55
Identities = 17/156 (10%), Positives = 43/156 (27%), Gaps = 16/156 (10%)
Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSR 94
V++ G G G++ A+ LK D + + + + + L + +
Sbjct: 5 VVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRADE-----------VARYLSEYAI 53
Query: 95 N-ETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDI 153
+ +DD + + + + R I +
Sbjct: 54 ARGVRHVVDDVQH-VGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLLINQTLGGRFQS 112
Query: 154 ILYEKLKPYHAISHMGESLPAIGIVGAILGIIKAMG 189
+ A+G+ A + +++ G
Sbjct: 113 FSD---VIGRNERTWINNCVAVGLSAAFVEPLESTG 145
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase,
covalently linked FAD, C4A-adduct, flavoprotein,
oxidoreductase; HET: FAO; 1.86A {Arthrobacter
globiformis} (A:1-58,A:216-269,A:483-546)
Length = 176
Score = 28.5 bits (63), Expect = 1.1
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVSLLE 63
IV G G G +A L V+L+E
Sbjct: 16 YIVVGGGSAGAAVAARLSEDPAVSVALVE 44
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH
fold, alpha/beta structure, rossmann fold,
6-hydroxylated FAD; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium}
(A:1-143,A:198-257,A:496-546)
Length = 254
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 25 PYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGV 59
P + P++ +IV GAG GG + A+ L +
Sbjct: 1 PTVSATPYDYIIV-GAGPGGIIAADRLSEAGKKVL 34
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase,
PF01266, NESG, PAR240, structural genomics, PSI-2; HET:
FAD; 1.90A {Pseudomonas aeruginosa PAO1}
(A:1-40,A:123-179,A:298-355)
Length = 155
Score = 27.6 bits (61), Expect = 2.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 30 QPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLE 63
+P +I+I GAG+GG A L V+LLE
Sbjct: 3 EPIDILIA-GAGIGGLSCALALHQAGIGKVTLLE 35
>1cf3_A Protein (glucose oxidase); oxidoreductase(flavoprotein);
HET: NAG BMA MAN FAD; 1.90A {Aspergillus niger}
(A:1-63,A:228-322,A:532-583)
Length = 210
Score = 27.2 bits (60), Expect = 2.7
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 30 QPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLE 63
+ + +I G GL G A L + V ++E
Sbjct: 18 RTVDYIIA-GGGLTGLTTAARLTENPNISVLVIE 50
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein,
monooxygenase, substrate complex, oxidoreductase; HET:
FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
(A:1-69,A:140-227,A:320-420)
Length = 258
Score = 27.1 bits (59), Expect = 2.8
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVSLLE 63
V++ G G G +A L D ++E
Sbjct: 35 VLIVGCGPAGLTLAAQLAAFPDIRTCIVE 63
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
Length = 120
Score = 26.7 bits (59), Expect = 3.4
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 138 ARSYEIENLMDEEIDIILYEKLKPYHAISH 167
A IE+L ++++ Y + A+
Sbjct: 3 ADVMSIESL----VEVVFYRGMTMQVAVPR 28
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI- like and
ferritin-like domains; YP_324989.1, structural genomics;
HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
(A:207-365)
Length = 159
Score = 26.7 bits (59), Expect = 3.4
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 20/107 (18%)
Query: 136 GNARSYEIENLMDEEIDIILY--EKLKPYHAISHMGESLPAIGIVGAILGIIKAMGNL-- 191
E + L E I E L+ Y ++ +GE P++ A +
Sbjct: 28 EKESDVEAKALFQEXITNKQRHIEYLETY--LTRLGE-KPSLSANIA-----NQYAKVKT 79
Query: 192 ----SQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQ 234
S + +A+G TG I +LC T I + K+
Sbjct: 80 ALTGSDDIYQIRSALGDIQTG----IGDIGNLCAXYTDPIATAIFKE 122
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein);
HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense}
(A:1-69,A:232-326,A:536-587)
Length = 216
Score = 26.9 bits (59), Expect = 3.6
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 36 IVAGAGLGGFVMANPLKVIKDSGVSLLE 63
I+AG GL G +A L V ++E
Sbjct: 28 IIAGGGLTGLTVAAKLTENPKIKVLVIE 55
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation,
oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus
eryngii} (B:1-46,B:215-272,B:525-566)
Length = 146
Score = 26.5 bits (58), Expect = 4.0
Identities = 16/112 (14%), Positives = 31/112 (27%), Gaps = 5/112 (4%)
Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSR 94
+V GAG G V+A L +D VS+L + + +
Sbjct: 5 YVVVGAGNAGNVVAARLT--EDPDVSVLVLEAGVSDENVLGAE---ARPAQSRPNLSVLI 59
Query: 95 NETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENL 146
N + + + + V + V + ++ L
Sbjct: 60 NAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAVKGVDGL 111
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.141 0.402
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,136,485
Number of extensions: 97031
Number of successful extensions: 359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 14
Length of query: 290
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 202
Effective length of database: 1,981,209
Effective search space: 400204218
Effective search space used: 400204218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)