RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|255764488|ref|YP_003065099.2| flagellar motor protein MotA
[Candidatus Liberibacter asiaticus str. psy62]
         (290 letters)



>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 288

 Score = 31.2 bits (69), Expect = 0.11
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 31 PFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLE 63
          P +I+I  GAG+GG   A  L       V+LLE
Sbjct: 1  PIDILIA-GAGIGGLSCALALHQAGIGKVTLLE 32


>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
          amagasakiense [TaxId: 63559]}
          Length = 391

 Score = 30.6 bits (68), Expect = 0.17
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 25 PYILIQPFEI------VIVAGAGLGGFVMANPLKVIKDSGVSLLE 63
            +L  P ++       I+AG GL G  +A  L       V ++E
Sbjct: 11 SSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIE 55


>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
          niger [TaxId: 5061]}
          Length = 385

 Score = 29.8 bits (66), Expect = 0.25
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 30 QPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLE 63
          +  + +I  G GL G   A  L    +  V ++E
Sbjct: 16 RTVDYIIA-GGGLTGLTTAARLTENPNISVLVIE 48


>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
          family {Streptomyces sp. [TaxId: 1931]}
          Length = 367

 Score = 29.2 bits (64), Expect = 0.42
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 5/31 (16%)

Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVS--LLE 63
           +V G G G  V A  L    ++GV   +LE
Sbjct: 5  AVVIGTGYGAAVSALRL---GEAGVQTLMLE 32


>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
          family {Brevibacterium sterolicum [TaxId: 1702]}
          Length = 370

 Score = 28.7 bits (63), Expect = 0.57
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 5/31 (16%)

Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVS--LLE 63
           +V G+G GG V A  L     +G+   ++E
Sbjct: 10 ALVIGSGYGGAVAALRL---TQAGIPTQIVE 37


>d2p3ra2 c.55.1.4 (A:254-500) Glycerol kinase {Escherichia coli
          [TaxId: 562]}
          Length = 247

 Score = 28.3 bits (62), Expect = 0.68
 Identities = 9/36 (25%), Positives = 13/36 (36%)

Query: 41 GLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYC 76
          G G F++ N  +    S   LL        G+  Y 
Sbjct: 13 GTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYA 48


>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase
          {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}
          Length = 379

 Score = 28.0 bits (61), Expect = 0.93
 Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 5/31 (16%)

Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVS--LLE 63
          V++ G+G  G   A  L     +G    + +
Sbjct: 7  VVIVGSGPIGCTYAREL---VGAGYKVAMFD 34


>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus
           casseliflavus [TaxId: 37734]}
          Length = 235

 Score = 27.9 bits (61), Expect = 0.93
 Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 9/102 (8%)

Query: 41  GLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYC---------DVLKLLYILMYNLKK 91
           G G F++ N  +  + S   LL   GY   G+  Y            ++ L   +  ++ 
Sbjct: 11  GTGAFIVMNTGEEPQLSDNDLLTTIGYGINGKVYYALEGSIFVAGSAIQWLRDGLRMIET 70

Query: 92  GSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMI 133
             ++E         N        T L      +     +  +
Sbjct: 71  SPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGL 112


>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
          (Prunus dulcis) [TaxId: 3755]}
          Length = 351

 Score = 27.9 bits (61), Expect = 1.00
 Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVSLLE 63
           ++ G G  G  +A  L   +   V +LE
Sbjct: 29 YVIVGGGTSGCPLAATLS--EKYKVLVLE 55


>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia
          coli [TaxId: 562]}
          Length = 84

 Score = 28.0 bits (62), Expect = 1.0
 Identities = 6/27 (22%), Positives = 10/27 (37%)

Query: 19 YAMGGNPYILIQPFEIVIVAGAGLGGF 45
           A   N   ++ P   V+     L G+
Sbjct: 41 SACAANKLAIVIPCHRVVRGDGSLSGY 67


>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
          flavocytochrome cellobiose dehydrogenase (CDH),
          FAD-binding domain {Fungus (Phanerochaete
          chrysosporium) [TaxId: 5306]}
          Length = 360

 Score = 27.7 bits (60), Expect = 1.0
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)

Query: 31 PFEIVIVAGAGLGGFVMANPL 51
          P++ +IV GAG GG + A+ L
Sbjct: 2  PYDYIIV-GAGPGGIIAADRL 21


>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine
           dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 196

 Score = 27.4 bits (59), Expect = 1.3
 Identities = 22/149 (14%), Positives = 37/149 (24%), Gaps = 7/149 (4%)

Query: 35  VIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSR 94
           + + GAG      A+ L  +  S +++ E        Q+    +                
Sbjct: 7   IALLGAGPASISCASFLARLGYSDITIFEK-------QEYVGGLSTSEIPQFRLPYDVVN 59

Query: 95  NETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDII 154
            E E   D         S+                   I +G         + +    I 
Sbjct: 60  FEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIK 119

Query: 155 LYEKLKPYHAISHMGESLPAIGIVGAILG 183
                 P      M  S P +   G I+G
Sbjct: 120 FNRWDLPEVDPETMQTSEPWVFAGGDIVG 148


>d2ibna1 a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 249

 Score = 26.7 bits (59), Expect = 2.2
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 101 IDDPYNSTIFTSIPTV--LENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEK 158
           + DP  ST          L+   ++    +YM  ++  N +      L  E   +I +  
Sbjct: 131 LQDPRYSTELGMYQPHCGLDRVLMSWGHDEYMYQVMKFN-KFS----LPPEAFYMIRFHS 185

Query: 159 LKPYH 163
             P+H
Sbjct: 186 FYPWH 190


>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
          mays) [TaxId: 4577]}
          Length = 347

 Score = 26.8 bits (57), Expect = 2.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVSLLE 63
          VIV GAG+ G   A  L     + + +LE
Sbjct: 3  VIVVGAGMSGISAAKRLSEAGITDLLILE 31


>d1ccwb_ c.1.19.2 (B:) Glutamate mutase, large subunit {Clostridium
           cochlearium [TaxId: 1494]}
          Length = 483

 Score = 26.7 bits (59), Expect = 2.5
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 138 ARSYEIENLMDEEIDIILYEKLKPY-HAISHMGESLPAIGIVGAI-LGII 185
             S E+E  M       +  + K     +  +G+   AIG V A   G++
Sbjct: 360 PMSKELETEMAV-----IKAETKCILDKMFELGKGDLAIGTVKAFETGVM 404


>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase
          DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
          Length = 265

 Score = 26.2 bits (56), Expect = 3.4
 Identities = 5/18 (27%), Positives = 8/18 (44%)

Query: 35 VIVAGAGLGGFVMANPLK 52
          + V G  + G   A  L+
Sbjct: 7  IAVVGGSISGLTAALMLR 24


>d1vfra_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase)
           {Vibrio fischeri [TaxId: 668]}
          Length = 217

 Score = 26.1 bits (56), Expect = 4.1
 Identities = 2/31 (6%), Positives = 6/31 (19%)

Query: 13  CIIGGFYAMGGNPYILIQPFEIVIVAGAGLG 43
             + G      +     +           +G
Sbjct: 161 TTMEGIDPELLSEIFADELKGYECHVALAIG 191


>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
          dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
          9913]}
          Length = 336

 Score = 25.6 bits (54), Expect = 5.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 35 VIVAGAGLGGFVMANPL 51
          VIV G GL   +++  +
Sbjct: 9  VIVLGTGLTECILSGIM 25


>d2axtb1 f.55.1.1 (B:2-489) Photosystem II core light harvesting
           protein PsbB {Thermosynechococcus elongatus [TaxId:
           146786]}
          Length = 488

 Score = 25.5 bits (56), Expect = 5.8
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 23/62 (37%)

Query: 4   IIG--LFITILCIIGGFYAMGGNPYILIQPFEIVI---------------VAGAGLGGFV 46
           ++   +   I+ II G +      +IL++P + +                +A      FV
Sbjct: 197 VVAHHIAAGIVGIIAGLF------HILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFV 250

Query: 47  MA 48
           +A
Sbjct: 251 VA 252


>d1n47a_ b.29.1.1 (A:) Legume lectin {Hairy vetch (Vicia villosa),
           isolectin b4 [TaxId: 3911]}
          Length = 233

 Score = 25.5 bits (55), Expect = 6.4
 Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 1/66 (1%)

Query: 65  FGYKALGQDTYCDVLKLLYILMYNLKKGSRNETENHIDDPYNSTI-FTSIPTVLENNELT 123
            G+  L  D   D       + ++    + +    HI    N      + P  +   E  
Sbjct: 102 GGFLGLFADRAHDASYQTVAVEFDTYSNAWDPNYTHIGIDTNGIESKKTTPFDMVYGEKA 161

Query: 124 TFICDY 129
             +  Y
Sbjct: 162 NIVITY 167


>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
          inhibitor, GDI {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 297

 Score = 25.2 bits (53), Expect = 7.1
 Identities = 5/14 (35%), Positives = 9/14 (64%)

Query: 35 VIVAGAGLGGFVMA 48
          VIV G G+   +++
Sbjct: 8  VIVLGTGITECILS 21


>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 959

 Score = 24.9 bits (53), Expect = 9.0
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 8/76 (10%)

Query: 54  IKDSGVSLLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSRNETENHIDDPYNSTIFTSI 113
           I    V +L IF      +        LL  +M  +          +   PY   I   +
Sbjct: 715 IFPDLVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDM--------NRLRPYIKQIAVLL 766

Query: 114 PTVLENNELTTFICDY 129
              L+N++   ++   
Sbjct: 767 LQRLQNSKTERYVKKL 782


>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 24.9 bits (54), Expect = 9.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 19 YAMGGNPYILIQPFEIVIVAGAGLGGF 45
           AM GNP  ++ P   V+ +   +G +
Sbjct: 41 GAMRGNPVPILIPCHRVVCSSGAVGNY 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.141    0.402 

Gapped
Lambda     K      H
   0.267   0.0452    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,075,803
Number of extensions: 51650
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 35
Length of query: 290
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,254,276
Effective search space: 258380856
Effective search space used: 258380856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.5 bits)