RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|255764488|ref|YP_003065099.2| flagellar motor protein MotA [Candidatus Liberibacter asiaticus str. psy62] (290 letters) >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288 Score = 31.2 bits (69), Expect = 0.11 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Query: 31 PFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLE 63 P +I+I GAG+GG A L V+LLE Sbjct: 1 PIDILIA-GAGIGGLSCALALHQAGIGKVTLLE 32 >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391 Score = 30.6 bits (68), Expect = 0.17 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 6/45 (13%) Query: 25 PYILIQPFEI------VIVAGAGLGGFVMANPLKVIKDSGVSLLE 63 +L P ++ I+AG GL G +A L V ++E Sbjct: 11 SSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIE 55 >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385 Score = 29.8 bits (66), Expect = 0.25 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%) Query: 30 QPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLE 63 + + +I G GL G A L + V ++E Sbjct: 16 RTVDYIIA-GGGLTGLTTAARLTENPNISVLVIE 48 >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367 Score = 29.2 bits (64), Expect = 0.42 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 5/31 (16%) Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVS--LLE 63 +V G G G V A L ++GV +LE Sbjct: 5 AVVIGTGYGAAVSALRL---GEAGVQTLMLE 32 >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370 Score = 28.7 bits (63), Expect = 0.57 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 5/31 (16%) Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVS--LLE 63 +V G+G GG V A L +G+ ++E Sbjct: 10 ALVIGSGYGGAVAALRL---TQAGIPTQIVE 37 >d2p3ra2 c.55.1.4 (A:254-500) Glycerol kinase {Escherichia coli [TaxId: 562]} Length = 247 Score = 28.3 bits (62), Expect = 0.68 Identities = 9/36 (25%), Positives = 13/36 (36%) Query: 41 GLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYC 76 G G F++ N + S LL G+ Y Sbjct: 13 GTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYA 48 >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379 Score = 28.0 bits (61), Expect = 0.93 Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 5/31 (16%) Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVS--LLE 63 V++ G+G G A L +G + + Sbjct: 7 VVIVGSGPIGCTYAREL---VGAGYKVAMFD 34 >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 235 Score = 27.9 bits (61), Expect = 0.93 Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 9/102 (8%) Query: 41 GLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYC---------DVLKLLYILMYNLKK 91 G G F++ N + + S LL GY G+ Y ++ L + ++ Sbjct: 11 GTGAFIVMNTGEEPQLSDNDLLTTIGYGINGKVYYALEGSIFVAGSAIQWLRDGLRMIET 70 Query: 92 GSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMI 133 ++E N T L + + + Sbjct: 71 SPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARGAVFGL 112 >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351 Score = 27.9 bits (61), Expect = 1.00 Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%) Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVSLLE 63 ++ G G G +A L + V +LE Sbjct: 29 YVIVGGGTSGCPLAATLS--EKYKVLVLE 55 >d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]} Length = 84 Score = 28.0 bits (62), Expect = 1.0 Identities = 6/27 (22%), Positives = 10/27 (37%) Query: 19 YAMGGNPYILIQPFEIVIVAGAGLGGF 45 A N ++ P V+ L G+ Sbjct: 41 SACAANKLAIVIPCHRVVRGDGSLSGY 67 >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360 Score = 27.7 bits (60), Expect = 1.0 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%) Query: 31 PFEIVIVAGAGLGGFVMANPL 51 P++ +IV GAG GG + A+ L Sbjct: 2 PYDYIIV-GAGPGGIIAADRL 21 >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 Score = 27.4 bits (59), Expect = 1.3 Identities = 22/149 (14%), Positives = 37/149 (24%), Gaps = 7/149 (4%) Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSR 94 + + GAG A+ L + S +++ E Q+ + Sbjct: 7 IALLGAGPASISCASFLARLGYSDITIFEK-------QEYVGGLSTSEIPQFRLPYDVVN 59 Query: 95 NETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDII 154 E E D S+ I +G + + I Sbjct: 60 FEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIK 119 Query: 155 LYEKLKPYHAISHMGESLPAIGIVGAILG 183 P M S P + G I+G Sbjct: 120 FNRWDLPEVDPETMQTSEPWVFAGGDIVG 148 >d2ibna1 a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {Human (Homo sapiens) [TaxId: 9606]} Length = 249 Score = 26.7 bits (59), Expect = 2.2 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 7/65 (10%) Query: 101 IDDPYNSTIFTSIPTV--LENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEK 158 + DP ST L+ ++ +YM ++ N + L E +I + Sbjct: 131 LQDPRYSTELGMYQPHCGLDRVLMSWGHDEYMYQVMKFN-KFS----LPPEAFYMIRFHS 185 Query: 159 LKPYH 163 P+H Sbjct: 186 FYPWH 190 >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347 Score = 26.8 bits (57), Expect = 2.3 Identities = 11/29 (37%), Positives = 15/29 (51%) Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVSLLE 63 VIV GAG+ G A L + + +LE Sbjct: 3 VIVVGAGMSGISAAKRLSEAGITDLLILE 31 >d1ccwb_ c.1.19.2 (B:) Glutamate mutase, large subunit {Clostridium cochlearium [TaxId: 1494]} Length = 483 Score = 26.7 bits (59), Expect = 2.5 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 7/50 (14%) Query: 138 ARSYEIENLMDEEIDIILYEKLKPY-HAISHMGESLPAIGIVGAI-LGII 185 S E+E M + + K + +G+ AIG V A G++ Sbjct: 360 PMSKELETEMAV-----IKAETKCILDKMFELGKGDLAIGTVKAFETGVM 404 >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 Score = 26.2 bits (56), Expect = 3.4 Identities = 5/18 (27%), Positives = 8/18 (44%) Query: 35 VIVAGAGLGGFVMANPLK 52 + V G + G A L+ Sbjct: 7 IAVVGGSISGLTAALMLR 24 >d1vfra_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase) {Vibrio fischeri [TaxId: 668]} Length = 217 Score = 26.1 bits (56), Expect = 4.1 Identities = 2/31 (6%), Positives = 6/31 (19%) Query: 13 CIIGGFYAMGGNPYILIQPFEIVIVAGAGLG 43 + G + + +G Sbjct: 161 TTMEGIDPELLSEIFADELKGYECHVALAIG 191 >d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336 Score = 25.6 bits (54), Expect = 5.4 Identities = 6/17 (35%), Positives = 10/17 (58%) Query: 35 VIVAGAGLGGFVMANPL 51 VIV G GL +++ + Sbjct: 9 VIVLGTGLTECILSGIM 25 >d2axtb1 f.55.1.1 (B:2-489) Photosystem II core light harvesting protein PsbB {Thermosynechococcus elongatus [TaxId: 146786]} Length = 488 Score = 25.5 bits (56), Expect = 5.8 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 23/62 (37%) Query: 4 IIG--LFITILCIIGGFYAMGGNPYILIQPFEIVI---------------VAGAGLGGFV 46 ++ + I+ II G + +IL++P + + +A FV Sbjct: 197 VVAHHIAAGIVGIIAGLF------HILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFV 250 Query: 47 MA 48 +A Sbjct: 251 VA 252 >d1n47a_ b.29.1.1 (A:) Legume lectin {Hairy vetch (Vicia villosa), isolectin b4 [TaxId: 3911]} Length = 233 Score = 25.5 bits (55), Expect = 6.4 Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 1/66 (1%) Query: 65 FGYKALGQDTYCDVLKLLYILMYNLKKGSRNETENHIDDPYNSTI-FTSIPTVLENNELT 123 G+ L D D + ++ + + HI N + P + E Sbjct: 102 GGFLGLFADRAHDASYQTVAVEFDTYSNAWDPNYTHIGIDTNGIESKKTTPFDMVYGEKA 161 Query: 124 TFICDY 129 + Y Sbjct: 162 NIVITY 167 >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297 Score = 25.2 bits (53), Expect = 7.1 Identities = 5/14 (35%), Positives = 9/14 (64%) Query: 35 VIVAGAGLGGFVMA 48 VIV G G+ +++ Sbjct: 8 VIVLGTGITECILS 21 >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Score = 24.9 bits (53), Expect = 9.0 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 8/76 (10%) Query: 54 IKDSGVSLLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSRNETENHIDDPYNSTIFTSI 113 I V +L IF + LL +M + + PY I + Sbjct: 715 IFPDLVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDM--------NRLRPYIKQIAVLL 766 Query: 114 PTVLENNELTTFICDY 129 L+N++ ++ Sbjct: 767 LQRLQNSKTERYVKKL 782 >d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Score = 24.9 bits (54), Expect = 9.3 Identities = 8/27 (29%), Positives = 14/27 (51%) Query: 19 YAMGGNPYILIQPFEIVIVAGAGLGGF 45 AM GNP ++ P V+ + +G + Sbjct: 41 GAMRGNPVPILIPCHRVVCSSGAVGNY 67 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.141 0.402 Gapped Lambda K H 0.267 0.0452 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,075,803 Number of extensions: 51650 Number of successful extensions: 167 Number of sequences better than 10.0: 1 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 35 Length of query: 290 Length of database: 2,407,596 Length adjustment: 84 Effective length of query: 206 Effective length of database: 1,254,276 Effective search space: 258380856 Effective search space used: 258380856 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (24.5 bits)