Query         gi|255764489|ref|YP_003065094.2| stationary phase survival protein SurE [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 250
No_of_seqs    158 out of 1614
Neff          7.7 
Searched_HMMs 13730
Date          Wed Jun  1 08:14:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764489.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1j9ja_ c.106.1.1 (A:) SurE ho 100.0       0       0  577.1  22.2  243    1-249     1-247 (247)
  2 d1l5xa_ c.106.1.1 (A:) SurE ho 100.0       0       0  541.8  24.4  235    1-240     1-246 (276)
  3 d1pn3a_ c.87.1.5 (A:) TDP-epi-  95.3   0.065 4.8E-06   29.5   8.5  110    1-125     1-124 (391)
  4 d1qo0d_ c.23.1.3 (D:) Positive  93.6    0.15 1.1E-05   27.3   7.2   35    1-38     12-46  (189)
  5 d2bisa1 c.87.1.8 (A:1-437) Gly  91.9    0.13 9.6E-06   27.6   5.0   39    1-39      1-45  (437)
  6 d1rzua_ c.87.1.8 (A:) Glycogen  90.0    0.23 1.7E-05   26.2   4.8   37    1-37      1-44  (477)
  7 d1rrva_ c.87.1.5 (A:) TDP-vanc  85.9    0.52 3.8E-05   24.0   4.5   37    1-40      1-41  (401)
  8 d1iira_ c.87.1.5 (A:) UDP-gluc  83.7    0.92 6.7E-05   22.5   4.9  112    1-126     1-126 (401)
  9 d1vhqa_ c.23.16.2 (A:) Putativ  83.0    0.73 5.3E-05   23.1   4.2   40    1-40      1-46  (217)
 10 d1g2ia_ c.23.16.2 (A:) Intrace  82.2    0.26 1.9E-05   25.8   1.7   38    1-38      1-38  (166)
 11 d3clsc1 c.26.2.3 (C:1-262) Sma  78.0     1.2 8.7E-05   21.8   3.9  100   16-125    40-147 (262)
 12 d2c1xa1 c.87.1.10 (A:7-456) UD  70.5     2.9 0.00021   19.4   4.3   22   16-37     18-39  (450)
 13 d2iw1a1 c.87.1.8 (A:2-371) Lip  67.2     3.8 0.00028   18.7   5.0   67   16-89     19-85  (370)
 14 d1udca_ c.2.1.2 (A:) Uridine d  66.5     2.3 0.00017   20.0   3.1   31    1-34      1-31  (338)
 15 d2b4aa1 c.23.1.1 (A:2-119) Hyp  62.7     2.4 0.00017   20.0   2.6   31    1-34      3-33  (118)
 16 d2pl1a1 c.23.1.1 (A:1-119) Pho  62.4     3.3 0.00024   19.0   3.3   80    1-125     1-80  (119)
 17 d1kgsa2 c.23.1.1 (A:2-123) Pho  61.8     3.4 0.00025   19.0   3.3   81    1-126     2-82  (122)
 18 d1ny5a1 c.23.1.1 (A:1-137) Tra  59.8     5.2 0.00038   17.9   4.0   80    1-125     1-80  (137)
 19 d1efvb_ c.26.2.3 (B:) Small, b  56.5       5 0.00036   18.0   3.4  104   16-127    40-150 (252)
 20 d1sy7a1 c.23.16.3 (A:553-736)   55.8     4.1  0.0003   18.5   2.8   42    2-43      5-46  (184)
 21 d1jbea_ c.23.1.1 (A:) CheY pro  53.8     6.6 0.00048   17.2   3.8   82    1-125     5-87  (128)
 22 d2c5aa1 c.2.1.2 (A:13-375) GDP  51.7     5.9 0.00043   17.5   3.1   31    1-34     16-46  (363)
 23 d1cm3a_ d.94.1.1 (A:) Histidin  50.6       7 0.00051   17.1   3.4   77    2-80      5-81  (85)
 24 d1dcfa_ c.23.1.2 (A:) Receiver  50.3       7 0.00051   17.1   3.3   30    1-33      8-37  (134)
 25 d1w25a1 c.23.1.1 (A:2-140) Res  49.8     7.6 0.00055   16.9   5.9   80    2-125     3-83  (139)
 26 d1a2oa1 c.23.1.1 (A:1-140) Met  48.4     6.5 0.00047   17.3   2.9   64    1-101     4-67  (140)
 27 d1u9ca_ c.23.16.2 (A:) GK2698   47.4     8.3  0.0006   16.6   4.6   39    3-41      7-53  (221)
 28 d1p80a1 c.23.16.3 (A:598-753)   47.0     8.4 0.00061   16.6   4.5   38    2-39      5-42  (156)
 29 d1j6ua1 c.5.1.1 (A:0-88) UDP-N  45.2     8.9 0.00065   16.4   4.8   30    1-33      2-31  (89)
 30 d1kewa_ c.2.1.2 (A:) dTDP-gluc  45.0     7.6 0.00056   16.8   2.8   30    1-33      1-30  (361)
 31 d2blla1 c.2.1.2 (A:316-657) Po  44.1     8.9 0.00065   16.4   3.1   30    1-33      1-31  (342)
 32 d1wd5a_ c.61.1.1 (A:) Putative  43.9     9.4 0.00068   16.3   4.0   24   93-116   119-145 (208)
 33 d2qwxa1 c.23.5.3 (A:1-230) Qui  43.8     9.4 0.00068   16.3   3.4   33    1-33      3-39  (230)
 34 d1lssa_ c.2.1.9 (A:) Ktn Mja21  43.5     9.2 0.00067   16.3   3.1   94    1-121     1-94  (132)
 35 d1i24a_ c.2.1.2 (A:) Sulfolipi  43.0     9.6  0.0007   16.2   3.1   30    1-33      2-31  (393)
 36 d1ka9h_ c.23.16.1 (H:) GAT sub  42.3     9.9 0.00072   16.1   5.5   30    1-33      1-30  (195)
 37 d1o1xa_ c.121.1.1 (A:) Putativ  41.9      10 0.00073   16.1   3.3  116    1-157     3-133 (145)
 38 d1vl0a_ c.2.1.2 (A:) DTDP-4-de  41.4     5.7 0.00041   17.6   1.7   30    1-33      2-31  (281)
 39 d1zgza1 c.23.1.1 (A:2-121) Tor  40.2      11 0.00078   15.9   3.3   79    1-125     2-80  (120)
 40 d1li4a2 c.23.12.3 (A:3-189,A:3  40.0     9.1 0.00066   16.4   2.6   64   17-89     59-128 (267)
 41 d1ir6a_ c.107.1.2 (A:) Exonucl  39.3     9.2 0.00067   16.4   2.5   43    2-46     26-71  (385)
 42 d1jaya_ c.2.1.6 (A:) Coenzyme   38.1      12 0.00084   15.7   3.0   35    1-38      1-35  (212)
 43 d1qvwa_ c.23.16.2 (A:) Hypothe  38.0      12 0.00084   15.7   4.2   29   10-38     24-52  (236)
 44 d2ayxa1 c.23.1.1 (A:817-949) S  36.3      12 0.00087   15.7   2.7   80    1-125     9-88  (133)
 45 d1oc2a_ c.2.1.2 (A:) dTDP-gluc  35.3      10 0.00074   16.1   2.2   32    1-35      3-34  (346)
 46 d1o1ya_ c.23.16.1 (A:) Hypothe  34.2      13 0.00097   15.4   4.4   34    1-36      4-37  (230)
 47 d1oi4a1 c.23.16.2 (A:23-192) H  34.1      13 0.00097   15.4   5.5   42    2-43      3-44  (170)
 48 d1yioa2 c.23.1.1 (A:3-130) Res  33.5      14 0.00099   15.3   5.8   29    2-33      4-32  (128)
 49 d2hpra_ d.94.1.1 (A:) Histidin  33.3      11 0.00077   16.0   2.1   76    3-80      5-80  (87)
 50 d1pcha_ d.94.1.1 (A:) Histidin  32.8     8.1 0.00059   16.7   1.4   77    2-80      4-80  (88)
 51 d1ptfa_ d.94.1.1 (A:) Histidin  30.0     9.5  0.0007   16.2   1.4   76    3-80      6-81  (87)
 52 d1sc6a2 c.23.12.1 (A:7-107,A:2  28.7      16  0.0012   14.8   2.8   27    1-33      5-31  (132)
 53 d1mo1a_ d.94.1.1 (A:) Crh, cat  27.9     8.3 0.00061   16.6   0.8   79    2-82      5-83  (87)
 54 d1p6qa_ c.23.1.1 (A:) CheY pro  27.8     9.1 0.00066   16.4   1.0   82    1-125     7-89  (129)
 55 d2pq6a1 c.87.1.10 (A:8-480) (I  27.5      17  0.0013   14.7   2.8   22   16-37     18-39  (473)
 56 d2c4ka2 c.61.1.2 (A:167-350) P  26.5      16  0.0012   14.8   2.1   18   99-116    90-108 (184)
 57 d1mvoa_ c.23.1.1 (A:) PhoP rec  26.2      18  0.0013   14.5   3.2   80    2-126     4-83  (121)
 58 d1n2sa_ c.2.1.2 (A:) dTDP-6-de  26.2      13 0.00093   15.5   1.5   29    1-33      1-29  (298)
 59 d1pswa_ c.87.1.7 (A:) ADP-hept  25.5      13 0.00093   15.5   1.4   36    1-38      1-41  (348)
 60 d1ka5a_ d.94.1.1 (A:) Histidin  24.6      20  0.0014   14.3   3.0   76    3-80      6-81  (88)
 61 d1jvna2 c.23.16.1 (A:-3-229) G  23.9      20  0.0015   14.3   3.2   30    1-33      4-34  (232)
 62 d1f6da_ c.87.1.3 (A:) UDP-N-ac  23.1      21  0.0015   14.2   4.9  149    1-167     1-174 (376)
 63 d1dz3a_ c.23.1.1 (A:) Sporulat  22.2      18  0.0013   14.6   1.6   64    1-101     2-65  (123)
 64 d2a9va1 c.23.16.1 (A:1-196) GM  21.3      23  0.0017   13.9   2.0   30    1-34      2-32  (196)
 65 d1ydga_ c.23.5.8 (A:) Trp repr  20.5      24  0.0017   13.8   3.3   37    1-37      3-41  (201)
 66 d1p5fa_ c.23.16.2 (A:) DJ-1 {H  20.3      24  0.0017   13.8   4.7   39    2-40      3-41  (186)

No 1  
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima [TaxId: 2336]}
Probab=100.00  E-value=0  Score=577.13  Aligned_cols=243  Identities=28%  Similarity=0.388  Sum_probs=227.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEE----EEEEECCCHHHHHHHHH
Q ss_conf             92688268986885699999999854891999817998565032022489705889711----04763272799999998
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK----KRFAVHGTPVDCVVIAL   76 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~----~~~~v~GtPaDcv~~~l   76 (250)
                      |||||||||||+||||++|+++|++ +|+|+||||++||||+|||||+++|++++++..    ..|+|+|||||||++||
T Consensus         1 M~ILltNDDGi~s~gl~~L~~~l~~-~~~V~vvAP~~~~S~~g~ait~~~~l~~~~~~~~~~~~~~~v~GTPaDcv~~al   79 (247)
T d1j9ja_           1 MRILVTNDDGIQSKGIIVLAELLSE-EHEVFVVAPDKERSATGHSITIHVPLWMKKVFISERVVAYSTTGTPADCVKLAY   79 (247)
T ss_dssp             CEEEEECSSCTTCHHHHHHHHHHTT-TSEEEEEEESSCCTTCTTCCCCSSCCCEEECCCSSSEEEEEESSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCHHHHHHHHH
T ss_conf             9599973799897679999999865-991999946998747712566799961388404888228986796289999865


Q ss_pred             HHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             75046454199971488853102333457778998898718985322200135676614788888499999998677866
Q gi|255764489|r   77 QKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPN  156 (250)
Q Consensus        77 ~~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~~~~~~~~~~a~~~~~~ii~~l~~~~~p~  156 (250)
                      +++++++|||||||||+|.|+|.|++|||||||||||+++||||||+||+..  +..+|+.+++++.++++++++.++|.
T Consensus        80 ~~l~~~~pDlVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~gipsiA~S~~~~--~~~~~~~a~~~~~~li~~l~~~~~p~  157 (247)
T d1j9ja_          80 NVVMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANY--ESPDFEGAARFLIDFLKEFDFSLLDP  157 (247)
T ss_dssp             HTTSTTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEESCS--SSCCHHHHHHHHHHHHHHCCGGGSCT
T ss_pred             HHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHH--CCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             0002576557996554787544155667777799999853778412012220--16431677889999999997457764


Q ss_pred             CCEEECCCCCCCCHHCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCEEEECCCCCCC
Q ss_conf             73543145678810158838913766543554278406886516997236777789885507899689889902153564
Q gi|255764489|r  157 TTLCNINFPRCSPEEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLT  236 (250)
Q Consensus       157 ~~vlNINiP~~~~~~ikg~k~t~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~TD~~Al~~GyISVTPL~~DlT  236 (250)
                      +.+||||||.   .++||+++|+||++.+...+.+..+++++.+||+.......+..++||.+|+++||||||||++|||
T Consensus       158 ~~~lNVN~P~---~~~kG~k~t~~g~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~tD~~al~~GyISVTPL~~dlT  234 (247)
T d1j9ja_         158 FTMLNINVPA---GEIKGWRFTRQSRRRWNDYFEERVSPFGEKYYWMMGEVIEDDDRDDVDYKAVREGYVSITPIHPFLT  234 (247)
T ss_dssp             TCEEEEEECS---SCCCEEEECBCCCCEEEEEEEEEECTTSCEEEEEEEEEECCCCCSSBHHHHHHTTEEEEEEECSCCC
T ss_pred             CCCCCCCCCH---HHCCCCEEEEECCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHCCEEEEEECCCCCC
T ss_conf             4201578980---4306843666213234553213007999706996367667889997299999799289803175876


Q ss_pred             CHHHHHHHHHHHC
Q ss_conf             8899999998745
Q gi|255764489|r  237 DYNSQQYISLSLE  249 (250)
Q Consensus       237 ~~~~l~~L~~~l~  249 (250)
                      +++.|++|+++||
T Consensus       235 ~~~~l~~L~~~fd  247 (247)
T d1j9ja_         235 NEQCLKKLREVYD  247 (247)
T ss_dssp             CHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHC
T ss_conf             9899999998549


No 2  
>d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=100.00  E-value=0  Score=541.75  Aligned_cols=235  Identities=29%  Similarity=0.418  Sum_probs=208.2

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEE---EEEEECCCHHHHHHHHHH
Q ss_conf             92688268986885699999999854891999817998565032022489705889711---047632727999999987
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK---KRFAVHGTPVDCVVIALQ   77 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~---~~~~v~GtPaDcv~~~l~   77 (250)
                      |||||||||||+||||++|+++|+++| +|+||||++||||+|||||+++|+++++++.   +.|+|+|||||||++||+
T Consensus         1 M~ILlTNDDGi~a~Gl~~L~~~l~~~g-~V~vvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~~v~GTPaDCV~lgl~   79 (276)
T d1l5xa_           1 MKILVTNDDGVHSPGLRLLYQFALSLG-DVDVVAPESPKSATGLGITLHKPLRMYEVDLCGFRAIATSGTPSDTVYLATF   79 (276)
T ss_dssp             CEEEEECSSCTTCHHHHHHHHHHGGGS-EEEEEEESSCTTTSCSSCCCSSCBCEEEEECSSSEEEEESSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCC-CEEEEECCCCCCCCCCCEECCCCCEEEEEECCCCEEEEECCCCHHHHHHHHC
T ss_conf             959997279989888999999998569-9899930998767625530799857999624884379973752645431021


Q ss_pred             HCCCCCCCEEEECCCCCCCCCHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCC-----CCCCHHHHHHHHHHHHHHHHH
Q ss_conf             50464541999714888531023334-577789988987189853222001356-----766147888884999999986
Q gi|255764489|r   78 KMSDKKPDLILSGVNVGTNTSNHVAY-SGTLAAAFEGSLQGIRSFALSQAYTYE-----NMIPWEVSETHAPRVLRQLLK  151 (250)
Q Consensus        78 ~l~~~~pDlViSGiN~G~N~g~~v~y-SGTvgAA~ea~~~GipsIAiS~~~~~~-----~~~~~~~a~~~~~~ii~~l~~  151 (250)
                      ++ ++||||||||||+|.|+|.+++| ||||||||||+++|||||||||++...     ....|+.+.+++.++++++++
T Consensus        80 ~~-~~~pDlVvSGIN~G~N~G~dv~~~SGTVgAA~Ea~~~GipsIA~S~~~~~~~~~~~~~~~~e~~~~~i~~l~~~~l~  158 (276)
T d1l5xa_          80 GL-GRKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPALAYSAYLENWNELLNNKEAVEIMGAVVSSTASYVLK  158 (276)
T ss_dssp             HH-TSCCSEEEEEEEEBCCCSHHHHTTCHHHHHHHHHHHTTCCEEEEEECCSCHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-CCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             57-99977899787677667840687116777899898618883156502257651224304567777777999999986


Q ss_pred             CCCCCCC-EEECCCCCCCCHHCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCHHH-HHCCCEEEE
Q ss_conf             7786673-54314567881015883891376654355427840688651699723677778988550789-968988990
Q gi|255764489|r  152 TQIPNTT-LCNINFPRCSPEEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFA-IQHNMISVT  229 (250)
Q Consensus       152 ~~~p~~~-vlNINiP~~~~~~ikg~k~t~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~TD~~A-l~~GyISVT  229 (250)
                      +++|.+. +||||||.++..++|+ ++|+++++.|...+.+..++++..|||+.. +. .+.+++||.++ +++||||||
T Consensus       159 ~~~p~~~~vlNVN~P~~~~~~ik~-~~t~~g~~~~~~~~~~~~dp~g~~yywl~g-~~-~~~~~~tD~~a~l~~GyISVT  235 (276)
T d1l5xa_         159 NGMPQGVDVISVNFPRRLGRGVRA-KLVKAAKLRYAQQVVERVDPRGVRYYWLYG-RD-LAPEPETDVYVVLKEGGIAIT  235 (276)
T ss_dssp             HCSCTTCSEEEEEECSCCCTTCCE-EECBCCSCSBCSCCEEEECTTSCEEEECSC-SB-CCCCTTBHHHHHHTSCCEEEE
T ss_pred             CCCCCCCEECCCCCHHCCCCCCCC-CEEEECCCCCCCCEEEEECCCCCEEEEECC-CC-CCCCCCCCHHHHHHCCEEEEE
T ss_conf             565558501257810104546764-268725635543047865799976886157-75-788999889999979989994


Q ss_pred             CCCCCCCCHHH
Q ss_conf             21535648899
Q gi|255764489|r  230 PITTDLTDYNS  240 (250)
Q Consensus       230 PL~~DlT~~~~  240 (250)
                      ||++|||+|+.
T Consensus       236 PL~~DlT~~d~  246 (276)
T d1l5xa_         236 PLTLNLNAVDA  246 (276)
T ss_dssp             EECCCCBSSCC
T ss_pred             EEEECCCCHHH
T ss_conf             61105867577


No 3  
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}
Probab=95.27  E-value=0.065  Score=29.49  Aligned_cols=110  Identities=18%  Similarity=0.212  Sum_probs=55.3

Q ss_pred             CEEEEECCCCCCCHH----HHHHHHHHHHCCCCEEEECCCCCCC-----CEEEEECCCCCEEEEEEEEEEEEECCCH---
Q ss_conf             926882689868856----9999999985489199981799856-----5032022489705889711047632727---
Q gi|255764489|r    1 MRILLTNDDGIKSKG----LITLENIARSISDDIWICAPEMDQS-----CLANSLTMSRNIACRTISKKRFAVHGTP---   68 (250)
Q Consensus         1 m~ILitNDDG~~a~g----l~~l~~~l~~~~~~v~vvAP~~~~S-----~~~~ait~~~~~~~~~~~~~~~~v~GtP---   68 (250)
                      ||||++.   +-+.|    +.+|++.|.+.||+|++++|..-..     |... +.+...... ..........+..   
T Consensus         1 mril~~~---~gt~Ghi~P~laLA~~L~~rGh~V~~~~~~~~~~~v~~~g~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~   75 (391)
T d1pn3a_           1 MRVLITG---CGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPM-VPVGRAVRA-GAREPGELPPGAAEVV   75 (391)
T ss_dssp             CEEEEEE---ESSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCE-EECSSCSSG-GGSCTTCCCTTCGGGH
T ss_pred             CEEEEEC---CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCEE-EECCCCHHH-HHHCHHHHHHHHHHHH
T ss_conf             9799985---8873689999999999998899899997803676898779848-987836877-7348566669999999


Q ss_pred             HHHHHHHHHHCC--CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             999999987504--645419997148885310233345777899889871898532220
Q gi|255764489|r   69 VDCVVIALQKMS--DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ  125 (250)
Q Consensus        69 aDcv~~~l~~l~--~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~  125 (250)
                      ...+.--+..+.  -+.||+||+..          .+.....++.-+...++|.+.+..
T Consensus        76 ~~~~~~~~~~l~~~~~~~D~vi~~~----------~~~~~~~~~~~a~~~~i~~~~~~~  124 (391)
T d1pn3a_          76 TEVVAEWFDKVPAAIEGCDAVVTTG----------LLPAAVAVRSMAEKLGIPYRYTVL  124 (391)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEEEE----------CHHHHHHHHHHHHHHTCCEEEEES
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEECC----------CCCHHHHHHHHHHHCCCCEEEEEC
T ss_conf             9999999999999730798478734----------471378999999980876488531


No 4  
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=93.62  E-value=0.15  Score=27.31  Aligned_cols=35  Identities=20%  Similarity=0.204  Sum_probs=27.8

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             92688268986885699999999854891999817998
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMD   38 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~   38 (250)
                      |||||..||-..   -+.|...|+..|++|..+++..+
T Consensus        12 ~~iLvvdd~~~~---~~~l~~~L~~~G~~v~~~~~~~~   46 (189)
T d1qo0d_          12 LQVLVLNPPGEV---SDALVLQLIRIGCSVRQCWPPPE   46 (189)
T ss_dssp             CEEEEESCTTHH---HHHHHHHHHHHTCEEEEECSCCS
T ss_pred             CEEEEEECCHHH---HHHHHHHHHHCCCCCEECCCHHH
T ss_conf             979999689999---99999999986996230479889


No 5  
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=91.88  E-value=0.13  Score=27.64  Aligned_cols=39  Identities=18%  Similarity=0.378  Sum_probs=28.1

Q ss_pred             CEEEEECCCCCC--CHHH----HHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             926882689868--8569----99999998548919998179985
Q gi|255764489|r    1 MRILLTNDDGIK--SKGL----ITLENIARSISDDIWICAPEMDQ   39 (250)
Q Consensus         1 m~ILitNDDG~~--a~gl----~~l~~~l~~~~~~v~vvAP~~~~   39 (250)
                      ||||+.=....=  .-|+    ..|+++|++.||+|+|++|..++
T Consensus         1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp~~~~   45 (437)
T d2bisa1           1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGR   45 (437)
T ss_dssp             CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTS
T ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             987998774588455879999999999999769989999058986


No 6  
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}
Probab=90.05  E-value=0.23  Score=26.18  Aligned_cols=37  Identities=19%  Similarity=0.142  Sum_probs=27.6

Q ss_pred             CEEEEECCCCC---CCHHH----HHHHHHHHHCCCCEEEECCCC
Q ss_conf             92688268986---88569----999999985489199981799
Q gi|255764489|r    1 MRILLTNDDGI---KSKGL----ITLENIARSISDDIWICAPEM   37 (250)
Q Consensus         1 m~ILitNDDG~---~a~gl----~~l~~~l~~~~~~v~vvAP~~   37 (250)
                      ||||..+---+   ..-||    ..|.++|.+.||+|+|++|.-
T Consensus         1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi~P~y   44 (477)
T d1rzua_           1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGY   44 (477)
T ss_dssp             CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECC
T ss_pred             CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             98999977220633267689999999999997699699996698


No 7  
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]}
Probab=85.90  E-value=0.52  Score=23.98  Aligned_cols=37  Identities=24%  Similarity=0.515  Sum_probs=27.5

Q ss_pred             CEEEEECCCCCCCHH----HHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf             926882689868856----9999999985489199981799856
Q gi|255764489|r    1 MRILLTNDDGIKSKG----LITLENIARSISDDIWICAPEMDQS   40 (250)
Q Consensus         1 m~ILitNDDG~~a~g----l~~l~~~l~~~~~~v~vvAP~~~~S   40 (250)
                      ||||++=   +-+.|    +.+|+++|.+.||+|+++++...++
T Consensus         1 mrIl~~~---~gt~Ghv~P~l~lA~~L~~rGh~V~~~t~~~~~~   41 (401)
T d1rrva_           1 MRVLLSV---CGTRGDVEIGVALADRLKALGVQTRMCAPPAAEE   41 (401)
T ss_dssp             CEEEEEE---ESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHH
T ss_pred             CEEEEEC---CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHH
T ss_conf             9499988---9875689999999999998799899997834677


No 8  
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]}
Probab=83.70  E-value=0.92  Score=22.46  Aligned_cols=112  Identities=16%  Similarity=0.222  Sum_probs=53.4

Q ss_pred             CEEEEECCCCCCC-----HHHHHHHHHHHHCCCCEEEECCCCCCCCEEEE-EC---CCCCEEEEEEE---EEEEEECCCH
Q ss_conf             9268826898688-----56999999998548919998179985650320-22---48970588971---1047632727
Q gi|255764489|r    1 MRILLTNDDGIKS-----KGLITLENIARSISDDIWICAPEMDQSCLANS-LT---MSRNIACRTIS---KKRFAVHGTP   68 (250)
Q Consensus         1 m~ILitNDDG~~a-----~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~a-it---~~~~~~~~~~~---~~~~~v~GtP   68 (250)
                      ||||++=   +-+     | +.+|+++|.+.||+|+++++...++-.-.+ +.   +..+.......   .....+...-
T Consensus         1 mkil~~~---~gt~Gh~~P-~lala~~L~~~Gh~V~~~~~~~~~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   76 (401)
T d1iira_           1 MRVLLAT---CGSRGDTEP-LVALAVRVRDLGADVRMCAPPDCAERLAEVGVPHVPVGPSARAPIQRAKPLTAEDVRRFT   76 (401)
T ss_dssp             CEEEEEC---CSCHHHHHH-HHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEECCC-------CCSCCCHHHHHHHH
T ss_pred             CEEEEEC---CCCHHHHHH-HHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEECCCCHHHHHHCCCCCHHHHHHHHH
T ss_conf             9799988---987268999-999999999879989999683067789876974897785065454103520079999999


Q ss_pred             HHHHHHHHHHC--CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99999998750--46454199971488853102333457778998898718985322200
Q gi|255764489|r   69 VDCVVIALQKM--SDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA  126 (250)
Q Consensus        69 aDcv~~~l~~l--~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~  126 (250)
                      ...+.--+..+  ..+.+|.++.-          ..++-.+++...+...++|...++..
T Consensus        77 ~~~~~~~~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~a~~~~~~~~~~~~~  126 (401)
T d1iira_          77 TEAIATQFDEIPAAAEGCAAVVTT----------GLLAAAIGVRSVAEKLGIPYFYAFHC  126 (401)
T ss_dssp             HHHHHHHHHHHHHHTTTCSEEEEE----------SCHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEE----------ECCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             999999999999976147642774----------12425788898888753542234456


No 9  
>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}
Probab=83.03  E-value=0.73  Score=23.08  Aligned_cols=40  Identities=18%  Similarity=0.202  Sum_probs=32.5

Q ss_pred             CE---EEEEC---CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf             92---68826---898688569999999985489199981799856
Q gi|255764489|r    1 MR---ILLTN---DDGIKSKGLITLENIARSISDDIWICAPEMDQS   40 (250)
Q Consensus         1 m~---ILitN---DDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S   40 (250)
                      |+   |+|++   =||.+-.-+...+..|+..|++|.+++|+..|-
T Consensus         1 MkKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~~sp~~~~~   46 (217)
T d1vhqa_           1 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQV   46 (217)
T ss_dssp             CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCS
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             9879999558888774209899999999998899899994699845


No 10 
>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=82.20  E-value=0.26  Score=25.78  Aligned_cols=38  Identities=16%  Similarity=0.265  Sum_probs=34.3

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             92688268986885699999999854891999817998
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMD   38 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~   38 (250)
                      |||++-=-||++.--+...++.|++.|++|.+++|+.+
T Consensus         1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~   38 (166)
T d1g2ia_           1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERG   38 (166)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             98999938986899999999999988998999968882


No 11 
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]}
Probab=77.97  E-value=1.2  Score=21.76  Aligned_cols=100  Identities=15%  Similarity=0.202  Sum_probs=60.2

Q ss_pred             HHHHHHHHH---HCCC--CEEE--ECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHH-CCCCCCCEE
Q ss_conf             999999998---5489--1999--8179985650320224897058897110476327279999999875-046454199
Q gi|255764489|r   16 LITLENIAR---SISD--DIWI--CAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQK-MSDKKPDLI   87 (250)
Q Consensus        16 l~~l~~~l~---~~~~--~v~v--vAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~-l~~~~pDlV   87 (250)
                      ..+|..+|+   +.|.  +|++  +.|...+...-.++..+-. +...+.++.++-.-+-+  +-..|.. +....||||
T Consensus        40 ~~AlE~Al~lke~~gg~~~Vtvvt~Gp~~a~~~Lr~alAmGaD-~avli~d~~~~~~d~~~--tA~~lA~~i~~~~~DLI  116 (262)
T d3clsc1          40 DFSLEEAMKIKESSDTDVEVVVVSVGPDRVDESLRKCLAKGAD-RAVRVWDDAAEGSDAIV--VGRILTEVIKKEAPDMV  116 (262)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEEEEEESCTTHHHHHHHHHHTTCS-EEEEECCGGGTTCCHHH--HHHHHHHHHHHHCCSEE
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCHHHH--HHHHHHHHHHCCCCCEE
T ss_conf             9999999999854798359999961663678999999860797-36999604556612888--99999998623488689


Q ss_pred             EECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             97148885310233345777899889871898532220
Q gi|255764489|r   88 LSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ  125 (250)
Q Consensus        88 iSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~  125 (250)
                      +.|--...      .++|.||+.. |.+.|+|.+..-.
T Consensus       117 l~G~~s~D------~~~gqvg~~l-Ae~Lg~P~vt~v~  147 (262)
T d3clsc1         117 FAGVQSSD------QAYASTGISV-ASYLNWPHAAVVA  147 (262)
T ss_dssp             EEESCCTT------TCCCCHHHHH-HHHHTCCEEEEEE
T ss_pred             EEEEECCC------CCCCHHHHHH-HHHCCCCEEEEEE
T ss_conf             99632147------7756377999-9873886477887


No 12 
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]}
Probab=70.47  E-value=2.9  Score=19.42  Aligned_cols=22  Identities=5%  Similarity=-0.062  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHCCCCEEEECCCC
Q ss_conf             9999999985489199981799
Q gi|255764489|r   16 LITLENIARSISDDIWICAPEM   37 (250)
Q Consensus        16 l~~l~~~l~~~~~~v~vvAP~~   37 (250)
                      +..|+++|.+.||+|+++.+..
T Consensus        18 ~l~la~~L~~rGH~Vt~~~~~~   39 (450)
T d2c1xa1          18 LLAVVRRLAAAAPHAVFSFFST   39 (450)
T ss_dssp             HHHHHHHHHHHCTTSEEEEEEC
T ss_pred             HHHHHHHHHHCCCCEEEEECCC
T ss_conf             9999999997799689997668


No 13 
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=67.15  E-value=3.8  Score=18.70  Aligned_cols=67  Identities=6%  Similarity=0.195  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             99999999854891999817998565032022489705889711047632727999999987504645419997
Q gi|255764489|r   16 LITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSDKKPDLILS   89 (250)
Q Consensus        16 l~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~~~pDlViS   89 (250)
                      +..|+++|.+.||+|+|+++..+.       .....+++..+....+.-.+........-...+...+||+|++
T Consensus        19 ~~~la~~L~~~G~~V~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~   85 (370)
T d2iw1a1          19 FMRIASTVAARGHHVRVYTQSWEG-------DCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVG   85 (370)
T ss_dssp             HHHHHHHHHHTTCCEEEEESEECS-------CCCTTCEEEECCCCCSSHHHHHHHHHHHHHHHHHHSCCSEEEE
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCC-------CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             999999999779979999567877-------8888638998676554430115889999999998616552531


No 14 
>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}
Probab=66.54  E-value=2.3  Score=20.04  Aligned_cols=31  Identities=23%  Similarity=0.217  Sum_probs=24.5

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             9268826898688569999999985489199981
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICA   34 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvA   34 (250)
                      ||||||=-.|+=..   .|++.|.+.|++|+++.
T Consensus         1 MKiLItG~tGfIG~---~l~~~L~~~g~~V~~~d   31 (338)
T d1udca_           1 MRVLVTGGSGYIGS---HTCVQLLQNGHDVIILD   31 (338)
T ss_dssp             CEEEEETTTSHHHH---HHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCCHHHH---HHHHHHHHCCCEEEEEE
T ss_conf             97999898878999---99999997849799997


No 15 
>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}
Probab=62.72  E-value=2.4  Score=19.95  Aligned_cols=31  Identities=10%  Similarity=0.271  Sum_probs=22.5

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             9268826898688569999999985489199981
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICA   34 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvA   34 (250)
                      |||||..||-....   .+.+.|+..|++|.++.
T Consensus         3 ~rILvVdDd~~~~~---~l~~~L~~~g~~v~~~~   33 (118)
T d2b4aa1           3 FRVTLVEDEPSHAT---LIQYHLNQLGAEVTVHP   33 (118)
T ss_dssp             CEEEEECSCHHHHH---HHHHHHHHTTCEEEEES
T ss_pred             CEEEEEECCHHHHH---HHHHHHHHCCCCEEEEC
T ss_conf             87999989899999---99999996299729979


No 16 
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}
Probab=62.38  E-value=3.3  Score=19.05  Aligned_cols=80  Identities=13%  Similarity=0.179  Sum_probs=48.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf             92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS   80 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~   80 (250)
                      |||||.-||-..   ...|.+.|+..|++|.. |..                               +.    -|+..+.
T Consensus         1 mrILvVDDd~~~---~~~l~~~L~~~G~~v~~-a~~-------------------------------g~----eal~~l~   41 (119)
T d2pl1a1           1 MRVLVVEDNALL---RHHLKVQIQDAGHQVDD-AED-------------------------------AK----EADYYLN   41 (119)
T ss_dssp             CEEEEECSCHHH---HHHHHHHHHHTTCEEEE-ESS-------------------------------HH----HHHHHHH
T ss_pred             CEEEEEECCHHH---HHHHHHHHHHCCCEEEE-ECC-------------------------------HH----HHHHHHH
T ss_conf             989999689999---99999999987999999-788-------------------------------79----9999998


Q ss_pred             CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             645419997148885310233345777899889871898532220
Q gi|255764489|r   81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ  125 (250)
Q Consensus        81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~  125 (250)
                      ..+||+||.-++...--|.+++.      .+......+|-|.+|-
T Consensus        42 ~~~~dliilD~~mP~~~G~e~~~------~i~~~~~~~pvi~lt~   80 (119)
T d2pl1a1          42 EHIPDIAIVDLGLPDEDGLSLIR------RWRSNDVSLPILVLTA   80 (119)
T ss_dssp             HSCCSEEEECSCCSSSCHHHHHH------HHHHTTCCSCEEEEES
T ss_pred             HCCCCEEEHHCCCCCCHHHHHHH------HHHHCCCCCCEEEEEC
T ss_conf             34645553420399950588999------9986296654576541


No 17 
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=61.76  E-value=3.4  Score=19.00  Aligned_cols=81  Identities=9%  Similarity=0.089  Sum_probs=49.6

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf             92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS   80 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~   80 (250)
                      |||||.-||-..   ...|.+.|+..|++|.++.                                +..++    +..+.
T Consensus         2 irILiVdDd~~~---~~~l~~~L~~~g~~v~~a~--------------------------------~~~~a----l~~l~   42 (122)
T d1kgsa2           2 VRVLVVEDERDL---ADLITEALKKEMFTVDVCY--------------------------------DGEEG----MYMAL   42 (122)
T ss_dssp             CEEEEECSSHHH---HHHHHHHHHHTTCEEEEES--------------------------------SHHHH----HHHHH
T ss_pred             CEEEEEECCHHH---HHHHHHHHHHCCCEEEEEC--------------------------------CHHHH----HHHHH
T ss_conf             789999189999---9999999998799999975--------------------------------66999----99998


Q ss_pred             CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             6454199971488853102333457778998898718985322200
Q gi|255764489|r   81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA  126 (250)
Q Consensus        81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~  126 (250)
                      ..+|||||.-++...--|.+++.      .+-.....+|-|.+|..
T Consensus        43 ~~~~dlillD~~mp~~~g~~~~~------~lr~~~~~~piI~lt~~   82 (122)
T d1kgsa2          43 NEPFDVVILDIMLPVHDGWEILK------SMRESGVNTPVLMLTAL   82 (122)
T ss_dssp             HSCCSEEEEESCCSSSCHHHHHH------HHHHTTCCCCEEEEESS
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHH------HHHHCCCCCCEEEECCC
T ss_conf             62765220013556621678999------99853899848997277


No 18 
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=59.79  E-value=5.2  Score=17.86  Aligned_cols=80  Identities=13%  Similarity=0.080  Sum_probs=43.4

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf             92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS   80 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~   80 (250)
                      |||||.-||=..   ...|.+.|+..|++|..+. +                               +.    -|+..+.
T Consensus         1 mkILiVDDd~~~---~~~l~~~L~~~g~~v~~a~-~-------------------------------~~----eAl~~l~   41 (137)
T d1ny5a1           1 MNVLVIEDDKVF---RGLLEEYLSMKGIKVESAE-R-------------------------------GK----EAYKLLS   41 (137)
T ss_dssp             CEEEEECCCHHH---HHHHHHHHHHHTCEEEEES-S-------------------------------HH----HHHHHHH
T ss_pred             CEEEEEECCHHH---HHHHHHHHHHCCCEEEEEC-C-------------------------------HH----HHHHHHH
T ss_conf             979999558999---9999999998799999988-8-------------------------------99----9998730


Q ss_pred             CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             645419997148885310233345777899889871898532220
Q gi|255764489|r   81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ  125 (250)
Q Consensus        81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~  125 (250)
                      ..+||+||.-++...=-|.+++      ..+-.....+|-|.+|-
T Consensus        42 ~~~~dlvilD~~mp~~~G~e~~------~~lr~~~~~~piI~lT~   80 (137)
T d1ny5a1          42 EKHFNVVLLDLLLPDVNGLEIL------KWIKERSPETEVIVITG   80 (137)
T ss_dssp             HSCCSEEEEESBCSSSBHHHHH------HHHHHHCTTSEEEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHH------HHHHHHCCCCCEEEEEC
T ss_conf             2555530177766544689999------99998488998998989


No 19 
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.46  E-value=5  Score=17.97  Aligned_cols=104  Identities=14%  Similarity=0.104  Sum_probs=53.4

Q ss_pred             HHHHHHHH--HH-CCCC-EEE--ECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHH-CCCCCCCEEE
Q ss_conf             99999999--85-4891-999--8179985650320224897058897110476327279999999875-0464541999
Q gi|255764489|r   16 LITLENIA--RS-ISDD-IWI--CAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQK-MSDKKPDLIL   88 (250)
Q Consensus        16 l~~l~~~l--~~-~~~~-v~v--vAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~-l~~~~pDlVi   88 (250)
                      ..+|..++  ++ .|.. |++  ..|....+..-.++..+-.- ...+......-.+.-+-++...+-. .....||||+
T Consensus        40 ~~AlE~Al~lke~~gg~~v~v~~~gp~~a~~~lr~ala~Gad~-avli~~~~~~~~~~~~~~~a~~~a~~~~~~~~DLIl  118 (252)
T d1efvb_          40 EIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGADR-GIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVL  118 (252)
T ss_dssp             HHHHHHHHHHHHTTSCSEEEEEEEESTTHHHHHHHHHHHTCSE-EEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf             9999999997650488359999726266799999998547862-499972310243221999999999987542998999


Q ss_pred             ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             714888531023334577789988987189853222001
Q gi|255764489|r   89 SGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAY  127 (250)
Q Consensus        89 SGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~  127 (250)
                      .|-..-     | .++|-||+.+ |.++|+|.+..-...
T Consensus       119 ~G~~s~-----D-~~tgqVg~~l-Ae~Lg~P~vt~v~~i  150 (252)
T d1efvb_         119 LGKQAI-----D-DDCNQTGQMT-AGFLDWPQGTFASQV  150 (252)
T ss_dssp             EESCCT-----T-TCCCCHHHHH-HHHHTCCEEEEEEEE
T ss_pred             EECCCH-----H-CCCCCHHHHH-HHHCCCCCEEEEEEE
T ss_conf             944320-----0-3677077787-875597733689999


No 20 
>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}
Probab=55.77  E-value=4.1  Score=18.50  Aligned_cols=42  Identities=12%  Similarity=0.073  Sum_probs=33.4

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEE
Q ss_conf             268826898688569999999985489199981799856503
Q gi|255764489|r    2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLA   43 (250)
Q Consensus         2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~   43 (250)
                      ||.+-=-||++...+..+.+.++..|.+|.+++|+..+--.+
T Consensus         5 kI~ilv~dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~~v~~~   46 (184)
T d1sy7a1           5 RVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAA   46 (184)
T ss_dssp             EEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBT
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
T ss_conf             899995599759999999999997899899998117733432


No 21 
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Probab=53.75  E-value=6.6  Score=17.25  Aligned_cols=82  Identities=13%  Similarity=0.176  Sum_probs=47.2

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf             92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS   80 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~   80 (250)
                      |||||.-||-..   .+.+.+.|+..|...+..|-                             +|.      -|+..+.
T Consensus         5 lriLvVDD~~~~---r~~i~~~L~~~g~~~v~~a~-----------------------------~g~------~a~~~~~   46 (128)
T d1jbea_           5 LKFLVVDDFSTM---RRIVRNLLKELGFNNVEEAE-----------------------------DGV------DALNKLQ   46 (128)
T ss_dssp             CCEEEECSCHHH---HHHHHHHHHHTTCCCEEEES-----------------------------SHH------HHHHHHT
T ss_pred             CEEEEEECCHHH---HHHHHHHHHHCCCCEEEEEC-----------------------------CCH------HHHHHHH
T ss_conf             989999698999---99999999987994899966-----------------------------856------7999985


Q ss_pred             CCCCCEEEECCCCCCCCCHHHHHHHHHHHHH-HHHHHCCCCCCCCC
Q ss_conf             6454199971488853102333457778998-89871898532220
Q gi|255764489|r   81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAF-EGSLQGIRSFALSQ  125 (250)
Q Consensus        81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~-ea~~~GipsIAiS~  125 (250)
                      ..+||+||..+|.-.--|.+++-     .-+ ......+|=|.+|-
T Consensus        47 ~~~~dlii~D~~mP~~dG~el~~-----~ir~~~~~~~~piI~lt~   87 (128)
T d1jbea_          47 AGGYGFVISDWNMPNMDGLELLK-----TIRADGAMSALPVLMVTA   87 (128)
T ss_dssp             TCCCCEEEEESCCSSSCHHHHHH-----HHHC--CCTTCCEEEEES
T ss_pred             CCCCCEEEEECCCCCCCHHHHHH-----HHHHCCCCCCCCEEEEEC
T ss_conf             47998899744644588899999-----998476678996899977


No 22 
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=51.75  E-value=5.9  Score=17.53  Aligned_cols=31  Identities=10%  Similarity=0.184  Sum_probs=23.4

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             9268826898688569999999985489199981
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICA   34 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvA   34 (250)
                      ||||||=--|+=..   .|.+.|.+.||+|+++.
T Consensus        16 MKILVTGgsGfIGs---~lv~~L~~~g~~V~~~d   46 (363)
T d2c5aa1          16 LKISITGAGGFIAS---HIARRLKHEGHYVIASD   46 (363)
T ss_dssp             CEEEEETTTSHHHH---HHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCCHHHH---HHHHHHHHCCCEEEEEE
T ss_conf             87999788878999---99999997829899996


No 23 
>d1cm3a_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Escherichia coli [TaxId: 562]}
Probab=50.60  E-value=7  Score=17.08  Aligned_cols=77  Identities=16%  Similarity=0.198  Sum_probs=50.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf             2688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r    2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS   80 (250)
Q Consensus         2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~   80 (250)
                      .+-|+|-.|++|---..|++.++++..+|++..  ..+..-+.|+.----|.+++-+.=...++|.=+.-+.-+|..++
T Consensus         5 ~v~I~n~~GLHARPAa~lv~~a~~f~s~i~i~~--~~~~~~akSi~~lm~L~~~~G~~i~i~~~G~De~~A~~~l~~~~   81 (85)
T d1cm3a_           5 EVTITAPNGLDTRPAAQFVKEAKGFTSEITVTS--NGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLM   81 (85)
T ss_dssp             EEECC-CCCSCHHHHHHHHHHHHTSCSEEEEEE--TTEEEETTCHHHHTTSCCCTTCEEEEEEESTTHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEE--CCEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf             999859996526299999999985899899999--99998438199998559999899999997889999999999999


No 24 
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=50.26  E-value=7  Score=17.07  Aligned_cols=30  Identities=7%  Similarity=0.361  Sum_probs=22.1

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             926882689868856999999998548919998
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC   33 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv   33 (250)
                      |||||.-||-..   ...+.+.|+..|++|.++
T Consensus         8 ~rILvVDD~~~~---~~~l~~~L~~~G~~v~~a   37 (134)
T d1dcfa_           8 LKVLVMDENGVS---RMVTKGLLVHLGCEVTTV   37 (134)
T ss_dssp             CEEEEECSCHHH---HHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEEECCHHH---HHHHHHHHHHCCCEEEEE
T ss_conf             999999599999---999999999879999998


No 25 
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=49.80  E-value=7.6  Score=16.86  Aligned_cols=80  Identities=16%  Similarity=0.128  Sum_probs=48.5

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf             26882689868856999999998548919998179985650320224897058897110476327279999999875046
Q gi|255764489|r    2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD   81 (250)
Q Consensus         2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~   81 (250)
                      ||||.-||-..   ...|.+.|+..|++|.++.                                ++.++.    ..+..
T Consensus         3 rILiVDD~~~~---~~~l~~~L~~~g~~v~~a~--------------------------------~~~eal----~~~~~   43 (139)
T d1w25a1           3 RILVVDDIEAN---VRLLEAKLTAEYYEVSTAM--------------------------------DGPTAL----AMAAR   43 (139)
T ss_dssp             EEEEECSSTTH---HHHHHHHHHHTTCEEEEES--------------------------------SHHHHH----HHHHH
T ss_pred             EEEEEECCHHH---HHHHHHHHHHCCCEEEEEC--------------------------------CCHHHH----HHHHC
T ss_conf             89999898999---9999999998799999974--------------------------------632545----54313


Q ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHHHHH-HHHHCCCCCCCCC
Q ss_conf             4541999714888531023334577789988-9871898532220
Q gi|255764489|r   82 KKPDLILSGVNVGTNTSNHVAYSGTLAAAFE-GSLQGIRSFALSQ  125 (250)
Q Consensus        82 ~~pDlViSGiN~G~N~g~~v~ySGTvgAA~e-a~~~GipsIAiS~  125 (250)
                      .+||||+..++.-.--|.++...     .++ .....+|=|.+|-
T Consensus        44 ~~~dlil~D~~~p~~~G~~~~~~-----ir~~~~~~~~piI~lt~   83 (139)
T d1w25a1          44 DLPDIILLDVMMPGMDGFTVCRK-----LKDDPTTRHIPVVLITA   83 (139)
T ss_dssp             HCCSEEEEESCCSSSCHHHHHHH-----HHHSTTTTTSCEEEEEC
T ss_pred             CCCEEEEEECCCCCCCCHHHHHH-----HHHCCCCCCCCEEEEEC
T ss_conf             54102211012468984288877-----66413246898899970


No 26 
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=48.39  E-value=6.5  Score=17.26  Aligned_cols=64  Identities=22%  Similarity=0.327  Sum_probs=35.7

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf             92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS   80 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~   80 (250)
                      |||||.-||-...   ..|.+.|+..|+ ..+|+-                           +-|  +.    -|+..+.
T Consensus         4 irVLiVDD~~~~r---~~l~~~L~~~g~-~~~v~~---------------------------a~~--g~----~al~~~~   46 (140)
T d1a2oa1           4 IRVLSVDDSALMR---QIMTEIINSHSD-MEMVAT---------------------------APD--PL----VARDLIK   46 (140)
T ss_dssp             EEEEEECSCHHHH---HHHHHHHHTSTT-EEEEEE---------------------------ESS--HH----HHHHHHH
T ss_pred             CEEEEEECCHHHH---HHHHHHHHHCCC-EEEEEE---------------------------ECC--HH----HHHHHHH
T ss_conf             9999995989999---999999996899-189999---------------------------799--99----9999998


Q ss_pred             CCCCCEEEECCCCCCCCCHHH
Q ss_conf             645419997148885310233
Q gi|255764489|r   81 DKKPDLILSGVNVGTNTSNHV  101 (250)
Q Consensus        81 ~~~pDlViSGiN~G~N~g~~v  101 (250)
                      ..+||+||.-++...--|.++
T Consensus        47 ~~~pDlvllDi~MP~~dG~e~   67 (140)
T d1a2oa1          47 KFNPDVLTLDVEMPRMDGLDF   67 (140)
T ss_dssp             HHCCSEEEEECCCSSSCHHHH
T ss_pred             HCCCCEEEECCCCCCCCHHHH
T ss_conf             459899997588899988999


No 27 
>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}
Probab=47.39  E-value=8.3  Score=16.63  Aligned_cols=39  Identities=10%  Similarity=0.092  Sum_probs=29.9

Q ss_pred             EEEECCC--------CCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             6882689--------86885699999999854891999817998565
Q gi|255764489|r    3 ILLTNDD--------GIKSKGLITLENIARSISDDIWICAPEMDQSC   41 (250)
Q Consensus         3 ILitNDD--------G~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~   41 (250)
                      |++||-+        |+...-+..-++.|++.|++|.++.|...+--
T Consensus         7 iv~s~~~~~~~~~~tG~~~~E~~~P~~~l~~aG~~V~~aS~~gg~~~   53 (221)
T d1u9ca_           7 MVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVP   53 (221)
T ss_dssp             EEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCC
T ss_pred             EEECCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCE
T ss_conf             99668012168875530399999999999988997999964898520


No 28 
>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}
Probab=47.04  E-value=8.4  Score=16.60  Aligned_cols=38  Identities=11%  Similarity=0.175  Sum_probs=32.1

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             26882689868856999999998548919998179985
Q gi|255764489|r    2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQ   39 (250)
Q Consensus         2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~   39 (250)
                      ||.|-=-||++..-+..++++|++.|.+|.+++|....
T Consensus         5 kVaiLv~dg~~~~e~~~~~~~l~~ag~~v~~v~~~~~~   42 (156)
T d1p80a1           5 VVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGE   42 (156)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSE
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             89999679988899999999999789989997524454


No 29 
>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}
Probab=45.22  E-value=8.9  Score=16.43  Aligned_cols=30  Identities=23%  Similarity=0.335  Sum_probs=26.3

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             926882689868856999999998548919998
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC   33 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv   33 (250)
                      |||-+.   ||---|+.+|++.|.+.|+.|.-.
T Consensus         2 ~~ihfi---GIgG~GMs~LA~~L~~~G~~VsGS   31 (89)
T d1j6ua1           2 MKIHFV---GIGGIGMSAVALHEFSNGNDVYGS   31 (89)
T ss_dssp             CEEEEE---TTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEE---EECHHHHHHHHHHHHHCCCEEEEE
T ss_conf             689999---577899999999999689969987


No 30 
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}
Probab=45.03  E-value=7.6  Score=16.84  Aligned_cols=30  Identities=20%  Similarity=0.273  Sum_probs=22.2

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             926882689868856999999998548919998
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC   33 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv   33 (250)
                      ||||||=--|+-..   .|.+.|.+.|++|+++
T Consensus         1 MkILItG~tGfIGs---~l~~~L~~~g~~vv~~   30 (361)
T d1kewa_           1 MKILITGGAGFIGS---AVVRHIIKNTQDTVVN   30 (361)
T ss_dssp             CEEEEESTTSHHHH---HHHHHHHHHCSCEEEE
T ss_pred             CEEEEECCCCHHHH---HHHHHHHHCCCCEEEE
T ss_conf             97999888767999---9999999779978999


No 31 
>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}
Probab=44.09  E-value=8.9  Score=16.42  Aligned_cols=30  Identities=20%  Similarity=0.304  Sum_probs=21.1

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCC-CEEEE
Q ss_conf             9268826898688569999999985489-19998
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISD-DIWIC   33 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~-~v~vv   33 (250)
                      ||||||--.|+=  | +.|++.|.+.|| +|+++
T Consensus         1 MKILITG~tGfi--G-~~l~~~Ll~~g~~~V~~l   31 (342)
T d2blla1           1 MRVLILGVNGFI--G-NHLTERLLREDHYEVYGL   31 (342)
T ss_dssp             CEEEEETCSSHH--H-HHHHHHHHHSTTCEEEEE
T ss_pred             CEEEEECCCCHH--H-HHHHHHHHHCCCCEEEEE
T ss_conf             979998987589--9-999999997799889999


No 32 
>d1wd5a_ c.61.1.1 (A:) Putative phosphoribosyltransferase TT1426 (TTHA1462) {Thermus thermophilus [TaxId: 274]}
Probab=43.89  E-value=9.4  Score=16.30  Aligned_cols=24  Identities=17%  Similarity=0.220  Sum_probs=13.4

Q ss_pred             CCCCCC--HHHHH-HHHHHHHHHHHHH
Q ss_conf             885310--23334-5777899889871
Q gi|255764489|r   93 VGTNTS--NHVAY-SGTLAAAFEGSLQ  116 (250)
Q Consensus        93 ~G~N~g--~~v~y-SGTvgAA~ea~~~  116 (250)
                      .|.++=  +|++. -+|+-||.+....
T Consensus       119 ~gk~ViLVDD~I~TG~T~~aa~~~L~~  145 (208)
T d1wd5a_         119 KGRDVVLVDDGVATGASMEAALSVVFQ  145 (208)
T ss_dssp             TTSEEEEECSCBSSCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             898899970400135789999999995


No 33 
>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.81  E-value=9.4  Score=16.29  Aligned_cols=33  Identities=3%  Similarity=-0.036  Sum_probs=16.6

Q ss_pred             CEEEEECCC----CCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             926882689----868856999999998548919998
Q gi|255764489|r    1 MRILLTNDD----GIKSKGLITLENIARSISDDIWIC   33 (250)
Q Consensus         1 m~ILitNDD----G~~a~gl~~l~~~l~~~~~~v~vv   33 (250)
                      ||||+-|..    ++..-=.++..+.+++.||+|.+.
T Consensus         3 mKiLiI~ghp~~~S~t~~l~~~~~~~~~~~g~ev~~~   39 (230)
T d2qwxa1           3 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVS   39 (230)
T ss_dssp             CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             8799998279985689999999999999679979999


No 34 
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=43.49  E-value=9.2  Score=16.34  Aligned_cols=94  Identities=17%  Similarity=0.234  Sum_probs=49.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf             92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS   80 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~   80 (250)
                      |||+|.   |+..-|. .|++.|.+.|++|.|+-.+.++=-  +. .  .     +.  ....+.|-+.|=-.+---++ 
T Consensus         1 M~IvI~---G~G~~G~-~la~~L~~~g~~v~vid~d~~~~~--~~-~--~-----~~--~~~vi~Gd~~~~~~l~~~~i-   63 (132)
T d1lssa_           1 MYIIIA---GIGRVGY-TLAKSLSEKGHDIVLIDIDKDICK--KA-S--A-----EI--DALVINGDCTKIKTLEDAGI-   63 (132)
T ss_dssp             CEEEEE---CCSHHHH-HHHHHHHHTTCEEEEEESCHHHHH--HH-H--H-----HC--SSEEEESCTTSHHHHHHTTT-
T ss_pred             CEEEEE---CCCHHHH-HHHHHHHHCCCCCCEECCCHHHHH--HH-H--H-----HH--HHHHCCCCCCCHHHHHHCCH-
T ss_conf             989998---9889999-999999977997200217846502--10-1--1-----10--03431474431165665072-


Q ss_pred             CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             64541999714888531023334577789988987189853
Q gi|255764489|r   81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSF  121 (250)
Q Consensus        81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsI  121 (250)
                       ++.|.+++-.+.-         .-.+-+++-+..+|.+-+
T Consensus        64 -~~a~~vv~~t~~d---------~~N~~~~~~~k~~~~~~i   94 (132)
T d1lssa_          64 -EDADMYIAVTGKE---------EVNLMSSLLAKSYGINKT   94 (132)
T ss_dssp             -TTCSEEEECCSCH---------HHHHHHHHHHHHTTCCCE
T ss_pred             -HHHHHHCCCCCCH---------HHHHHHHHHHHHCCCCEE
T ss_conf             -4543222467758---------888898889987599669


No 35 
>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=43.05  E-value=9.6  Score=16.22  Aligned_cols=30  Identities=17%  Similarity=0.236  Sum_probs=23.6

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             926882689868856999999998548919998
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC   33 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv   33 (250)
                      ||||||=--|+-  | ..|++.|.+.||+|+++
T Consensus         2 ~kILVTGatGfi--G-~~lv~~Ll~~g~~V~~i   31 (393)
T d1i24a_           2 SRVMVIGGDGYC--G-WATALHLSKKNYEVCIV   31 (393)
T ss_dssp             CEEEEETTTSHH--H-HHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCHH--H-HHHHHHHHHCCCEEEEE
T ss_conf             989998998489--9-99999999785989999


No 36 
>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}
Probab=42.31  E-value=9.9  Score=16.15  Aligned_cols=30  Identities=17%  Similarity=0.184  Sum_probs=25.2

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             926882689868856999999998548919998
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC   33 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv   33 (250)
                      |||||-+   +.+-.++.++++++.+|.++.|+
T Consensus         1 Mki~IiD---~G~gN~~si~~~l~~lg~~~~i~   30 (195)
T d1ka9h_           1 MKALLID---YGSGNLRSAAKALEAAGFSVAVA   30 (195)
T ss_dssp             CEEEEEC---SSCSCHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEEE---CCCCHHHHHHHHHHHCCCEEEEE
T ss_conf             9899990---79749999999999879819998


No 37 
>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]}
Probab=41.93  E-value=10  Score=16.11  Aligned_cols=116  Identities=16%  Similarity=0.168  Sum_probs=59.4

Q ss_pred             CEEEEECCC-CCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHC
Q ss_conf             926882689-8688569999999985489199981799856503202248970588971104763272799999998750
Q gi|255764489|r    1 MRILLTNDD-GIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKM   79 (250)
Q Consensus         1 m~ILitNDD-G~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l   79 (250)
                      |||-|..|. |++-.  ..|++.|++.|++|.-+-|..+.|                       +| .|-=+..++.. +
T Consensus         3 mkI~igsDh~G~~lK--~~l~~~L~~~g~~v~D~G~~~~~~-----------------------~d-Ypd~a~~va~~-v   55 (145)
T d1o1xa_           3 VKIAIASDHAAFELK--EKVKNYLLGKGIEVEDHGTYSEES-----------------------VD-YPDYAKKVVQS-I   55 (145)
T ss_dssp             CEEEEEECSTTHHHH--HHHHHHHHHTTCEEEECCCCSSSC-----------------------CC-HHHHHHHHHHH-H
T ss_pred             CEEEEEECCHHHHHH--HHHHHHHHHCCCEEEECCCCCCCC-----------------------CC-CCHHHHHHHHH-H
T ss_conf             589997287079999--999999997799999779997777-----------------------78-34899999999-7


Q ss_pred             CCCCCCE--EEECCCCCCCCCHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCC-----CCCC------CHHHHHHHHHHH
Q ss_conf             4645419--9971488853102333457778998898-718985322200135-----6766------147888884999
Q gi|255764489|r   80 SDKKPDL--ILSGVNVGTNTSNHVAYSGTLAAAFEGS-LQGIRSFALSQAYTY-----ENMI------PWEVSETHAPRV  145 (250)
Q Consensus        80 ~~~~pDl--ViSGiN~G~N~g~~v~ySGTvgAA~ea~-~~GipsIAiS~~~~~-----~~~~------~~~~a~~~~~~i  145 (250)
                      ...+.|+  ++.|=-              +|.+|-|. +.||.+-.++-.+..     .+..      ..-.....+.++
T Consensus        56 ~~~~~~~GIliCGtG--------------~G~siaANK~~GIRAa~~~d~~~A~~ar~hNnaNvL~lGa~~~~~~~a~~i  121 (145)
T d1o1xa_          56 LSNEADFGILLCGTG--------------LGMSIAANRYRGIRAALCLFPDMARLARSHNNANILVLPGRLIGAELAFWI  121 (145)
T ss_dssp             HTTSCSEEEEEESSS--------------HHHHHHHTTSTTCCEEECSSHHHHHHHHHTTCCSEEEEETTTSCHHHHHHH
T ss_pred             HCCCCCEEEEECCCC--------------HHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCEEEEECCEECCHHHHHHH
T ss_conf             348656799805875--------------899999871799755421278999999985696189775575188999999


Q ss_pred             HHHHHHCCCCCC
Q ss_conf             999986778667
Q gi|255764489|r  146 LRQLLKTQIPNT  157 (250)
Q Consensus       146 i~~l~~~~~p~~  157 (250)
                      ++.+++..+..+
T Consensus       122 v~~~l~t~F~gg  133 (145)
T d1o1xa_         122 VDTFLSTPFDGG  133 (145)
T ss_dssp             HHHHHHCCCCCT
T ss_pred             HHHHHCCCCCCC
T ss_conf             999977998987


No 38 
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}
Probab=41.41  E-value=5.7  Score=17.64  Aligned_cols=30  Identities=17%  Similarity=0.338  Sum_probs=22.7

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             926882689868856999999998548919998
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC   33 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv   33 (250)
                      ||||||=--|+=..   .|++.|.+.||+|+.+
T Consensus         2 MKIlItGasGfiG~---~l~~~L~~~g~~Vi~~   31 (281)
T d1vl0a_           2 MKILITGANGQLGR---EIQKQLKGKNVEVIPT   31 (281)
T ss_dssp             EEEEEESTTSHHHH---HHHHHHTTSSEEEEEE
T ss_pred             CEEEEECCCCHHHH---HHHHHHHHCCCEEEEE
T ss_conf             87999799988999---9999998688989992


No 39 
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=40.18  E-value=11  Score=15.95  Aligned_cols=79  Identities=13%  Similarity=0.146  Sum_probs=44.4

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf             92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS   80 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~   80 (250)
                      |||||.-||-..   ...|.+.|+..|++|..+. +                               +.++    +..+.
T Consensus         2 ~rILiVDDd~~~---~~~l~~~L~~~g~~v~~a~-~-------------------------------~~~a----~~~~~   42 (120)
T d1zgza1           2 HHIVIVEDEPVT---QARLQSYFTQEGYTVSVTA-S-------------------------------GAGL----REIMQ   42 (120)
T ss_dssp             CEEEEECSSHHH---HHHHHHHHHHTTCEEEEES-S-------------------------------HHHH----HHHHH
T ss_pred             CEEEEEECCHHH---HHHHHHHHHHCCCEEEEEC-C-------------------------------HHHH----HHHHH
T ss_conf             989999099999---9999999998799999989-9-------------------------------9999----99998


Q ss_pred             CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             645419997148885310233345777899889871898532220
Q gi|255764489|r   81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ  125 (250)
Q Consensus        81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~  125 (250)
                      ..+||+|+.-++...--|..++       -..-....+|-|.+|-
T Consensus        43 ~~~~dliilD~~mp~~~g~~~~-------~~~~~~~~~piI~lt~   80 (120)
T d1zgza1          43 NQSVDLILLDINLPDENGLMLT-------RALRERSTVGIILVTG   80 (120)
T ss_dssp             HSCCSEEEEESCCSSSCHHHHH-------HHHHTTCCCEEEEEES
T ss_pred             HCCCCEEEEEHHHCCCHHHHHH-------HHHHCCCCCEEEEEEC
T ss_conf             5499888620232362368999-------9976047984999981


No 40 
>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.99  E-value=9.1  Score=16.36  Aligned_cols=64  Identities=16%  Similarity=0.171  Sum_probs=35.4

Q ss_pred             HHHHHHHHHCCCCEEEEC--CCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHH----HHHHHHHHHCCCCCCCEEEE
Q ss_conf             999999985489199981--79985650320224897058897110476327279----99999987504645419997
Q gi|255764489|r   17 ITLENIARSISDDIWICA--PEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPV----DCVVIALQKMSDKKPDLILS   89 (250)
Q Consensus        17 ~~l~~~l~~~~~~v~vvA--P~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPa----Dcv~~~l~~l~~~~pDlViS   89 (250)
                      ..|.+.|++.|.+|.+++  |.+-|--.-.++.        +.+..+|+..|---    +|+.-+|. ..+.+|||++-
T Consensus        59 A~L~~tL~~~GA~V~~~~~Np~STQDdvaAaL~--------~~Gi~VfA~~g~~~eey~~~~~~~L~-~~~~~P~liiD  128 (267)
T d1li4a2          59 AVLIETLVTLGAEVQWSSCNIFSTQDHAAAAIA--------KAGIPVYAWKGETDEEYLWCIEQTLY-FKDGPLNMILD  128 (267)
T ss_dssp             HHHHHHHHHTTCEEEEECSSTTCCCHHHHHHHH--------HTTCCEEECTTCCHHHHHHHHHTTTE-ETTEECSEEEE
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEC--------CCCCEEEEECCCCHHHHHHHHHHHHH-CCCCCCCEEEE
T ss_conf             999999997468689841675523553101212--------68826787569998899999999985-33799768871


No 41 
>d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]}
Probab=39.29  E-value=9.2  Score=16.35  Aligned_cols=43  Identities=19%  Similarity=0.275  Sum_probs=30.7

Q ss_pred             EEEEECC---CCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEE
Q ss_conf             2688268---98688569999999985489199981799856503202
Q gi|255764489|r    2 RILLTND---DGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSL   46 (250)
Q Consensus         2 ~ILitND---DG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ai   46 (250)
                      +|+|-=|   ||+.|..|  |+++|+.+|.+|...-|++..-|.|-+.
T Consensus        26 ~I~I~gDyD~DGitS~aI--l~~~L~~~g~~~~~~Ip~R~~eGyGl~~   71 (385)
T d1ir6a_          26 RIRVHGDYDADGLTGTAI--LVRGLAALGADVHPFIPHRLEEGYGVLM   71 (385)
T ss_dssp             EEEEECCSSHHHHHHHHH--HHHHHHHTTCEEEEECCCTTTSCSSCCG
T ss_pred             EEEEEECCCCCHHHHHHH--HHHHHHHCCCCEEEECCCCCCCCCCCCH
T ss_conf             799992778606799999--9999998899759987786656998689


No 42 
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=38.13  E-value=12  Score=15.75  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=26.7

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             92688268986885699999999854891999817998
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMD   38 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~   38 (250)
                      |||-|+.--|  +-| ++|++.|.+.||+|.+..-+.+
T Consensus         1 Mki~vigGaG--~iG-~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTG--NLG-KGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTS--HHH-HHHHHHHHTTTCEEEEEESSHH
T ss_pred             CEEEEEECCC--HHH-HHHHHHHHHCCCEEEEEECCHH
T ss_conf             9799994883--999-9999999987998999979999


No 43 
>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.98  E-value=12  Score=15.73  Aligned_cols=29  Identities=10%  Similarity=-0.043  Sum_probs=23.2

Q ss_pred             CCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             86885699999999854891999817998
Q gi|255764489|r   10 GIKSKGLITLENIARSISDDIWICAPEMD   38 (250)
Q Consensus        10 G~~a~gl~~l~~~l~~~~~~v~vvAP~~~   38 (250)
                      |+...-+..=++++++.|++|.++.|...
T Consensus        24 G~~~~E~~~P~~~l~~aG~~V~iASp~G~   52 (236)
T d1qvwa_          24 GVFVVEALHPFNTFRKEGFEVDFVSETGK   52 (236)
T ss_dssp             CBCHHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             33699999999999977985999889998


No 44 
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=36.33  E-value=12  Score=15.66  Aligned_cols=80  Identities=21%  Similarity=0.229  Sum_probs=47.7

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf             92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS   80 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~   80 (250)
                      |+|||.-||-..   .+.|.+.|+..|++|. +|...                               .+|    +..+.
T Consensus         9 ~~ILiVDD~~~~---~~~l~~~L~~~g~~v~-~a~~g-------------------------------~ea----~~~~~   49 (133)
T d2ayxa1           9 MMILVVDDHPIN---RRLLADQLGSLGYQCK-TANDG-------------------------------VDA----LNVLS   49 (133)
T ss_dssp             CEEEEEESSHHH---HHHHHHHHHHHTSEEE-EECCS-------------------------------HHH----HHHHH
T ss_pred             CEEEEEECCHHH---HHHHHHHHHHCCCEEE-EECCH-------------------------------HHH----HHHHH
T ss_conf             889999899999---9999999997598899-97748-------------------------------778----99873


Q ss_pred             CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             645419997148885310233345777899889871898532220
Q gi|255764489|r   81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ  125 (250)
Q Consensus        81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~  125 (250)
                      ..+|||||..++...=-|.+++      ..+-.....+|-|.+|.
T Consensus        50 ~~~~dlillD~~mP~~dG~el~------~~ir~~~~~~pii~lt~   88 (133)
T d2ayxa1          50 KNHIDIVLSDVNMPNMDGYRLT------QRIRQLGLTLPVIGVTA   88 (133)
T ss_dssp             HSCCSEEEEEESSCSSCCHHHH------HHHHHHHCCSCEEEEES
T ss_pred             CCCCEEEEEECCCCCCCHHHHH------HHHHHHCCCCCEEEEEC
T ss_conf             4574599995368999889999------99997688988899966


No 45 
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}
Probab=35.34  E-value=10  Score=16.09  Aligned_cols=32  Identities=13%  Similarity=0.212  Sum_probs=23.3

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             92688268986885699999999854891999817
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAP   35 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP   35 (250)
                      ||||||=--|+=..   .|.+.|.+.|++|.|++-
T Consensus         3 mkILVTGgtGfIGs---~lv~~L~~~g~~v~v~~~   34 (346)
T d1oc2a_           3 KNIIVTGGAGFIGS---NFVHYVYNNHPDVHVTVL   34 (346)
T ss_dssp             SEEEEETTTSHHHH---HHHHHHHHHCTTCEEEEE
T ss_pred             CEEEEECCCCHHHH---HHHHHHHHCCCCEEEEEE
T ss_conf             99999188868999---999999977997499998


No 46 
>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}
Probab=34.16  E-value=13  Score=15.36  Aligned_cols=34  Identities=21%  Similarity=0.235  Sum_probs=27.6

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             926882689868856999999998548919998179
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPE   36 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~   36 (250)
                      ||||+-.-.-++-||.  +.+.|++.|.++.++=+.
T Consensus         4 mrvli~qh~~~e~~G~--~~~~l~~~g~~~~~~~~~   37 (230)
T d1o1ya_           4 VRVLAIRHVEIEDLGM--MEDIFREKNWSFDYLDTP   37 (230)
T ss_dssp             CEEEEECSSTTSSCTH--HHHHHHHTTCEEEEECGG
T ss_pred             EEEEEEECCCCCCCHH--HHHHHHHCCCEEEEEECC
T ss_conf             0899997999989379--999999789979999789


No 47 
>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}
Probab=34.09  E-value=13  Score=15.35  Aligned_cols=42  Identities=7%  Similarity=0.128  Sum_probs=34.3

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEE
Q ss_conf             268826898688569999999985489199981799856503
Q gi|255764489|r    2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLA   43 (250)
Q Consensus         2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~   43 (250)
                      ||++-=-||++---+....+.+++.|++|.++.|...++-.+
T Consensus         3 kIail~~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~   44 (170)
T d1oi4a1           3 KIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKG   44 (170)
T ss_dssp             EEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEEC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEE
T ss_conf             899994798379999999999997899899624789944665


No 48 
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=33.50  E-value=14  Score=15.29  Aligned_cols=29  Identities=21%  Similarity=0.223  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             26882689868856999999998548919998
Q gi|255764489|r    2 RILLTNDDGIKSKGLITLENIARSISDDIWIC   33 (250)
Q Consensus         2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv   33 (250)
                      ||||.-||-...   +.|.+.|+..|++|..+
T Consensus         4 ~ILiVDDd~~~~---~~l~~~L~~~g~~v~~a   32 (128)
T d1yioa2           4 TVFVVDDDMSVR---EGLRNLLRSAGFEVETF   32 (128)
T ss_dssp             EEEEECSCHHHH---HHHHHHHHTTTCEEEEE
T ss_pred             EEEEEECCHHHH---HHHHHHHHHCCCCCCCC
T ss_conf             799998999999---99999999869971111


No 49 
>d2hpra_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Bacillus subtilis [TaxId: 1423]}
Probab=33.34  E-value=11  Score=15.97  Aligned_cols=76  Identities=14%  Similarity=0.144  Sum_probs=47.0

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf             688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r    3 ILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS   80 (250)
Q Consensus         3 ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~   80 (250)
                      +-|+|..|++|---..|++.++.+..+|++..-  ++..-..|+-----|.+++-+.=...++|.=++-+.-+|..++
T Consensus         5 ~~I~n~~GLHARPAa~lv~~a~~f~~~I~i~~~--~~~~dakSi~~lm~L~~~~G~~v~i~~~G~De~~A~~~l~~~l   80 (87)
T d2hpra_           5 FKVTADSGIHARPATVLVQTASKYDADVNLEYN--GKTVNLKSIMGVVSLGIAKGAEITISASGADENDALNALEETM   80 (87)
T ss_dssp             EEBCCTTCSCHHHHHHHHHHHTTCSSEEEEEET--TEEEETTCHHHHHTTCCCTTCEEEEEEESTTHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEC--CEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf             999379977461899999999758998999989--9998238199998559999999999997868999999999999


No 50 
>d1pcha_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Mycoplasma capricolum [TaxId: 2095]}
Probab=32.84  E-value=8.1  Score=16.70  Aligned_cols=77  Identities=18%  Similarity=0.221  Sum_probs=47.8

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf             2688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r    2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS   80 (250)
Q Consensus         2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~   80 (250)
                      .+.|+|..|+++---..|++.++.+..+|++..  .++.+-+.|+-----|.+.+-+.=...++|.=++-+.-+|..++
T Consensus         4 ~~~I~n~~GLHARPAa~lv~~a~~f~~~I~i~~--~~~~~~akSi~~lm~L~~~~G~~v~i~~~G~De~~A~~~l~~~l   80 (88)
T d1pcha_           4 SAIITDKVGLHARPASVLAKEASKFSSNITIIA--NEKQGNLKSIMNVMAMAIKTGTEITIQADGNDADQAIQAIKQTM   80 (88)
T ss_dssp             EEECCCTTCSCHHHHHHHHHHHTTCSSEEEEEE--TTEEEETTCHHHHHHHCCCTTCEEEEEEESTTHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEE--CCEEECHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf             999958998646189999999976899899998--99898318299998559999999999997889999999999999


No 51 
>d1ptfa_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Enterococcus faecalis [TaxId: 1351]}
Probab=29.98  E-value=9.5  Score=16.25  Aligned_cols=76  Identities=16%  Similarity=0.125  Sum_probs=44.6

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf             688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r    3 ILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS   80 (250)
Q Consensus         3 ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~   80 (250)
                      +-|+|..|+++---..|++.++++..+|++..-  ++..-+.|+-----|.+++-+.=...++|.=++-+.-.|..++
T Consensus         6 ~~I~~~~GlHaRpAa~lv~~a~~~~s~i~i~~~--~~~v~akSi~~lm~L~~~~G~~i~i~~~G~de~~Al~~l~~~l   81 (87)
T d1ptfa_           6 FHIVAETGIHARPATLLVQTASKFNSDINLEYK--GKSVNLKSIMGVMSLGVGQGSDVTITVDGADEAEGMAAIVETL   81 (87)
T ss_dssp             EECCCTTCSCHHHHHHHHHHHTTCSSEEEEEET--TEEEETTCHHHHHHHCCCTTCEEEEEEESTTHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEC--CEEEECCCHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf             999389976463999999999868997999989--9998274899998418789999999997878999999999999


No 52 
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=28.69  E-value=16  Score=14.80  Aligned_cols=27  Identities=22%  Similarity=0.337  Sum_probs=17.4

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             926882689868856999999998548919998
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC   33 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv   33 (250)
                      ||||+|  |+++..++..    |++.|+.++..
T Consensus         5 mKILv~--d~i~~~a~~~----L~~~g~~~v~~   31 (132)
T d1sc6a2           5 IKFLLV--EGVHQKALES----LRAAGYTNIEF   31 (132)
T ss_dssp             CCEEEC--SCCCHHHHHH----HHHTTCCCEEE
T ss_pred             CEEEEE--CCCCHHHHHH----HHHCCCEEEEE
T ss_conf             889997--8989999999----98489999995


No 53 
>d1mo1a_ d.94.1.1 (A:) Crh, catabolite repression HPr-like protein {Bacillus subtilis [TaxId: 1423]}
Probab=27.88  E-value=8.3  Score=16.61  Aligned_cols=79  Identities=11%  Similarity=0.147  Sum_probs=48.6

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf             26882689868856999999998548919998179985650320224897058897110476327279999999875046
Q gi|255764489|r    2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD   81 (250)
Q Consensus         2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~   81 (250)
                      ++-|+|.-|+++-=-..|++.++.+..+|++..  .++..-+.|+----.|.+.+-+.=...++|.=+.-+.-.|..++.
T Consensus         5 ~v~I~~~~GLHARpAa~lv~~a~~f~s~i~i~~--~~~~~dakSi~~lm~L~~~~G~~i~i~~~G~de~~A~~~l~~~~~   82 (87)
T d1mo1a_           5 KVEVRLKTGLQARPAALFVQEANRFTSDVFLEK--DGKKVNAKSIMGLMSLAVSTGTEVTLIAQGEDEQEALEKLAAYVQ   82 (87)
T ss_dssp             EEECCSCEEECHHHHHHHHHHHTTSSSEEEEEE--TTEEEETTCHHHHHHSCCCTTCEEEEEEESTTHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEE--CCEEECCCCHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf             999889995657799999999964899899998--999983667999972478899999999978889999999999998


Q ss_pred             C
Q ss_conf             4
Q gi|255764489|r   82 K   82 (250)
Q Consensus        82 ~   82 (250)
                      +
T Consensus        83 ~   83 (87)
T d1mo1a_          83 E   83 (87)
T ss_dssp             T
T ss_pred             H
T ss_conf             5


No 54 
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}
Probab=27.83  E-value=9.1  Score=16.37  Aligned_cols=82  Identities=12%  Similarity=0.131  Sum_probs=43.9

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf             92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS   80 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~   80 (250)
                      |||||.-||-..   .+.+.+.|+..|+.++.+|.                               ++.    -|+..+.
T Consensus         7 ~kILiVDD~~~~---~~~l~~~L~~~g~~~v~~a~-------------------------------~~~----~al~~l~   48 (129)
T d1p6qa_           7 IKVLIVDDQVTS---RLLLGDALQQLGFKQITAAG-------------------------------DGE----QGMKIMA   48 (129)
T ss_dssp             CCEEEECSSHHH---HHHHHHHHHTTTCSCEECCS-------------------------------SHH----HHHHHHH
T ss_pred             CEEEEEECCHHH---HHHHHHHHHHCCCEEEEEEC-------------------------------CHH----HHHHHHH
T ss_conf             789999798999---99999999987994999977-------------------------------989----9999998


Q ss_pred             CCCCCEEEECCCCCCCCCHHHHHHHHHHHHH-HHHHHCCCCCCCCC
Q ss_conf             6454199971488853102333457778998-89871898532220
Q gi|255764489|r   81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAF-EGSLQGIRSFALSQ  125 (250)
Q Consensus        81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~-ea~~~GipsIAiS~  125 (250)
                      ..+||+||.-+|.-.=-|.+++-     .-+ ......+|-|.+|-
T Consensus        49 ~~~~dlii~D~~mP~~~G~el~~-----~lr~~~~~~~~pii~lt~   89 (129)
T d1p6qa_          49 QNPHHLVISDFNMPKMDGLGLLQ-----AVRANPATKKAAFIILTA   89 (129)
T ss_dssp             TSCCSEEEECSSSCSSCHHHHHH-----HHTTCTTSTTCEEEECCS
T ss_pred             HCCCCEEEEEEECCCCCHHHHHH-----HHHHCCCCCCCEEEEEEE
T ss_conf             18987587655047997599999-----998385567982999980


No 55 
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]}
Probab=27.50  E-value=17  Score=14.67  Aligned_cols=22  Identities=18%  Similarity=0.132  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHCCCCEEEECCCC
Q ss_conf             9999999985489199981799
Q gi|255764489|r   16 LITLENIARSISDDIWICAPEM   37 (250)
Q Consensus        16 l~~l~~~l~~~~~~v~vvAP~~   37 (250)
                      +..|+++|.+.||+|+++.+..
T Consensus        18 ~~~lA~~L~~rGH~Vt~~~~~~   39 (473)
T d2pq6a1          18 LFKLAKLLHLRGFHITFVNTEY   39 (473)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEHH
T ss_pred             HHHHHHHHHHCCCEEEEEECCC
T ss_conf             9999999997899699992764


No 56 
>d2c4ka2 c.61.1.2 (A:167-350) PRPP synthetase-associated protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.49  E-value=16  Score=14.80  Aligned_cols=18  Identities=17%  Similarity=0.058  Sum_probs=10.9

Q ss_pred             HHHH-HHHHHHHHHHHHHH
Q ss_conf             2333-45777899889871
Q gi|255764489|r   99 NHVA-YSGTLAAAFEGSLQ  116 (250)
Q Consensus        99 ~~v~-ySGTvgAA~ea~~~  116 (250)
                      +|++ ..||+..|.+....
T Consensus        90 DD~I~TG~T~~~a~~~Lk~  108 (184)
T d2c4ka2          90 DDIIDDVESFVAAAEILKE  108 (184)
T ss_dssp             CSEESSTHHHHHHHHHHHT
T ss_pred             CCHHCCHHHHHHHHHHHHH
T ss_conf             2133145779999999974


No 57 
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=26.24  E-value=18  Score=14.53  Aligned_cols=80  Identities=20%  Similarity=0.226  Sum_probs=48.0

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf             26882689868856999999998548919998179985650320224897058897110476327279999999875046
Q gi|255764489|r    2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD   81 (250)
Q Consensus         2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~   81 (250)
                      ||||.-||-..   ...|.+.|+..|++|..+ .+                               +.+    |+..+..
T Consensus         4 rILiVDDd~~~---~~~l~~~L~~~g~~v~~a-~~-------------------------------~~~----al~~l~~   44 (121)
T d1mvoa_           4 KILVVDDEESI---VTLLQYNLERSGYDVITA-SD-------------------------------GEE----ALKKAET   44 (121)
T ss_dssp             EEEEECSCHHH---HHHHHHHHHHTTCEEEEE-SS-------------------------------HHH----HHHHHHH
T ss_pred             CEEEEECCHHH---HHHHHHHHHHCCCEEEEE-CC-------------------------------HHH----HHHHHHC
T ss_conf             79999899999---999999999889999998-78-------------------------------899----9998743


Q ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             454199971488853102333457778998898718985322200
Q gi|255764489|r   82 KKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA  126 (250)
Q Consensus        82 ~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~  126 (250)
                      .+|||||.-++...--|.+++.      .+-.....+|-|.+|..
T Consensus        45 ~~~dlillD~~mp~~~G~~~~~------~~r~~~~~~~ii~lt~~   83 (121)
T d1mvoa_          45 EKPDLIVLDVMLPKLDGIEVCK------QLRQQKLMFPILMLTAK   83 (121)
T ss_dssp             HCCSEEEEESSCSSSCHHHHHH------HHHHTTCCCCEEEEECT
T ss_pred             CCCCEEEECCCCCCCCCCHHHH------HHHCCCCCCEEEEEEEE
T ss_conf             5665897314546999823665------53105899889999813


No 58 
>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}
Probab=26.17  E-value=13  Score=15.47  Aligned_cols=29  Identities=21%  Similarity=0.278  Sum_probs=21.4

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             926882689868856999999998548919998
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC   33 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv   33 (250)
                      ||||||=--|+=.   ..|.+.|.+.|+ ++++
T Consensus         1 MKILItG~tGfiG---~~l~~~L~~~g~-~v~~   29 (298)
T d1n2sa_           1 MNILLFGKTGQVG---WELQRSLAPVGN-LIAL   29 (298)
T ss_dssp             CEEEEECTTSHHH---HHHHHHTTTTSE-EEEE
T ss_pred             CEEEEECCCCHHH---HHHHHHHHHCCC-EEEE
T ss_conf             9799989998899---999999986899-9999


No 59 
>d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]}
Probab=25.50  E-value=13  Score=15.47  Aligned_cols=36  Identities=22%  Similarity=0.135  Sum_probs=22.5

Q ss_pred             CEEEEECCCCC-----CCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             92688268986-----885699999999854891999817998
Q gi|255764489|r    1 MRILLTNDDGI-----KSKGLITLENIARSISDDIWICAPEMD   38 (250)
Q Consensus         1 m~ILitNDDG~-----~a~gl~~l~~~l~~~~~~v~vvAP~~~   38 (250)
                      |||||-.-|++     ..|-|++|++..-  +.+|+++.....
T Consensus         1 MkILii~~~~iGD~il~~p~i~~Lk~~~P--~~~I~~l~~~~~   41 (348)
T d1pswa_           1 MKILVIGPSWVGDMMMSQSLYRTLQARYP--QAIIDVMAPAWC   41 (348)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHHHST--TCEEEEEECGGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHHCC--CCEEEEEECHHH
T ss_conf             96999858983799999999999998788--998999989508


No 60 
>d1ka5a_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Staphylococcus aureus [TaxId: 1280]}
Probab=24.57  E-value=20  Score=14.34  Aligned_cols=76  Identities=12%  Similarity=0.148  Sum_probs=46.2

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf             688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r    3 ILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS   80 (250)
Q Consensus         3 ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~   80 (250)
                      +-|+|..|++|---..|++.++.+..+|++..-  .+..-+.|+-----|.+.+-+.=...++|.=++-+.-+|..++
T Consensus         6 ~tI~n~~GLHARPAa~lv~~a~~f~s~I~i~~~--~~~~~akSi~~ll~L~~~~G~~v~i~~~G~de~~Al~~l~~~l   81 (88)
T d1ka5a_           6 YVIIDETGIHARPATMLVQTASKFDSDIQLEYN--GKKVNLKSIMGVMSLGVGKDAEITIYADGSDESDAIQAISDVL   81 (88)
T ss_dssp             EEBCCTTCSCHHHHHHHHHHHHHHSSEEEEEET--TEEEETTCHHHHHTTTCCTTCEEEEEEESSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEC--CEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf             999089987462999999999648998999989--9998528099998559999999999997889999999999999


No 61 
>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Probab=23.88  E-value=20  Score=14.26  Aligned_cols=30  Identities=17%  Similarity=0.335  Sum_probs=23.9

Q ss_pred             CE-EEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             92-6882689868856999999998548919998
Q gi|255764489|r    1 MR-ILLTNDDGIKSKGLITLENIARSISDDIWIC   33 (250)
Q Consensus         1 m~-ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv   33 (250)
                      |+ |+|-+   |.+-.|..++++++.+|.++.++
T Consensus         4 m~~I~IiD---yg~gN~~Sv~~al~~lG~~~~ii   34 (232)
T d1jvna2           4 MPVVHVID---VESGNLQSLTNAIEHLGYEVQLV   34 (232)
T ss_dssp             SCEEEEEC---CSCSCCHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEEE---CCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             99999997---89868999999999869976999


No 62 
>d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]}
Probab=23.11  E-value=21  Score=14.16  Aligned_cols=149  Identities=14%  Similarity=0.202  Sum_probs=72.8

Q ss_pred             CEEEEECCCCCCCHHHHH--HHHHHHHC-CCCEEEECCCCCCCCEEEEECCCCCEEE---EEEEEEEEEECC-CHHHHHH
Q ss_conf             926882689868856999--99999854-8919998179985650320224897058---897110476327-2799999
Q gi|255764489|r    1 MRILLTNDDGIKSKGLIT--LENIARSI-SDDIWICAPEMDQSCLANSLTMSRNIAC---RTISKKRFAVHG-TPVDCVV   73 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~--l~~~l~~~-~~~v~vvAP~~~~S~~~~ait~~~~~~~---~~~~~~~~~v~G-tPaDcv~   73 (250)
                      ||||+.=  |-.+.-++.  |.+++++. +.++.+++--.-.+ ++..+  .+.+..   ..+.   ...+| +.+..+.
T Consensus         1 MKi~~v~--GtR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~-~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~   72 (376)
T d1f6da_           1 MKVLTVF--GTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHRE-MLDQV--LKLFSIVPDYDLN---IMQPGQGLTEITC   72 (376)
T ss_dssp             CEEEEEE--CSHHHHHHHHHHHHHHHHCTTCEEEEEECCTTGG-GGHHH--HHHTTCCCSEECC---CCSSSSCHHHHHH
T ss_pred             CEEEEEE--EHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHH-HHHHH--HHHCCCCCCCCCC---CCCCCCCHHHHHH
T ss_conf             9699999--8267399999999999738998779999088989-99999--9862878774400---4889998999999


Q ss_pred             ---HHHHH-CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCHHHHHHHH----
Q ss_conf             ---99875-04645419997148885310233345777899889871898532220013567---66147888884----
Q gi|255764489|r   74 ---IALQK-MSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYTYEN---MIPWEVSETHA----  142 (250)
Q Consensus        74 ---~~l~~-l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~~~~---~~~~~~a~~~~----  142 (250)
                         .++.. +...+||+|+-       .|+.   -=|+++|+-|..++||-+=+--..-..+   ..+-|.....+    
T Consensus        73 ~~i~~~~~~~~~~kPD~v~v-------~GDr---~e~la~a~aa~~~~ipi~HiegG~~s~~~~~~~pde~~R~~iskls  142 (376)
T d1f6da_          73 RILEGLKPILAEFKPDVVLV-------HGDT---TTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLA  142 (376)
T ss_dssp             HHHHHHHHHHHHHCCSEEEE-------ETTC---HHHHHHHHHHHTTTCCEEEESCCCCCSCTTSSTTHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHCCCCCEEE-------ECCC---CCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCE
T ss_conf             99986478897456762243-------1034---4313689998740753899852446542000474066554203200


Q ss_pred             -------HHHHHHHHHCCCCCCCEEECCCCCC
Q ss_conf             -------9999999867786673543145678
Q gi|255764489|r  143 -------PRVLRQLLKTQIPNTTLCNINFPRC  167 (250)
Q Consensus       143 -------~~ii~~l~~~~~p~~~vlNINiP~~  167 (250)
                             ..-.++|++.+.++..+++|--|..
T Consensus       143 ~~hf~~~~~~~~~L~~~G~~~~~I~~vG~~~~  174 (376)
T d1f6da_         143 MYHFSPTETSRQNLLRENVADSRIFITGNTVI  174 (376)
T ss_dssp             SEEEESSHHHHHHHHHTTCCGGGEEECCCHHH
T ss_pred             EEEEECCHHHHHHHHHCCCCCCCCCEECCCHH
T ss_conf             48874347888687751898653412167248


No 63 
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=22.18  E-value=18  Score=14.55  Aligned_cols=64  Identities=22%  Similarity=0.404  Sum_probs=36.3

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf             92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r    1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS   80 (250)
Q Consensus         1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~   80 (250)
                      |||||.-||-..   ...|.+.|+..+ ...+|.                           -+-+|  .++.    ..+.
T Consensus         2 irILivDD~~~~---~~~l~~~L~~~~-~~~~v~---------------------------~a~~g--~~al----~~~~   44 (123)
T d1dz3a_           2 IKVCIADDNREL---VSLLDEYISSQP-DMEVIG---------------------------TAYNG--QDCL----QMLE   44 (123)
T ss_dssp             EEEEEECSCHHH---HHHHHHHHHTST-TEEEEE---------------------------EESSH--HHHH----HHHH
T ss_pred             CEEEEEECCHHH---HHHHHHHHHHCC-CCEEEE---------------------------EECCH--HHHH----HHHH
T ss_conf             599999689999---999999998589-937999---------------------------98999--9999----9998


Q ss_pred             CCCCCEEEECCCCCCCCCHHH
Q ss_conf             645419997148885310233
Q gi|255764489|r   81 DKKPDLILSGVNVGTNTSNHV  101 (250)
Q Consensus        81 ~~~pDlViSGiN~G~N~g~~v  101 (250)
                      ..+||+|+.-++.-.=-|.++
T Consensus        45 ~~~~dlillD~~mP~~dG~e~   65 (123)
T d1dz3a_          45 EKRPDILLLDIIMPHLDGLAV   65 (123)
T ss_dssp             HHCCSEEEEESCCSSSCHHHH
T ss_pred             HCCCCEEEECCCCCCCCHHHH
T ss_conf             569999998389999979999


No 64 
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=21.35  E-value=23  Score=13.94  Aligned_cols=30  Identities=17%  Similarity=0.173  Sum_probs=20.5

Q ss_pred             CEEEE-ECCCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             92688-26898688569999999985489199981
Q gi|255764489|r    1 MRILL-TNDDGIKSKGLITLENIARSISDDIWICA   34 (250)
Q Consensus         1 m~ILi-tNDDG~~a~gl~~l~~~l~~~~~~v~vvA   34 (250)
                      ||||+ =|.|++.    +.++++|+++|.++.|+-
T Consensus         2 ~ki~iiD~g~~~~----~~i~r~l~~lg~~~~i~~   32 (196)
T d2a9va1           2 LKIYVVDNGGQWT----HREWRVLRELGVDTKIVP   32 (196)
T ss_dssp             CBEEEEEESCCTT----CHHHHHHHHTTCBCCEEE
T ss_pred             CEEEEEECCCCHH----HHHHHHHHHCCCEEEEEE
T ss_conf             8899998987299----999999997898699993


No 65 
>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]}
Probab=20.48  E-value=24  Score=13.83  Aligned_cols=37  Identities=5%  Similarity=0.051  Sum_probs=22.5

Q ss_pred             CEEEEECCC--CCCCHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             926882689--8688569999999985489199981799
Q gi|255764489|r    1 MRILLTNDD--GIKSKGLITLENIARSISDDIWICAPEM   37 (250)
Q Consensus         1 m~ILitNDD--G~~a~gl~~l~~~l~~~~~~v~vvAP~~   37 (250)
                      |||||.+.=  |-...=.+++++.+++.|+||.++-...
T Consensus         3 mkilivy~S~~GnT~~la~~ia~g~~~~G~ev~~~~~~~   41 (201)
T d1ydga_           3 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRE   41 (201)
T ss_dssp             CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             579999968983899999999999986597799998556


No 66 
>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.25  E-value=24  Score=13.80  Aligned_cols=39  Identities=10%  Similarity=0.117  Sum_probs=30.9

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf             268826898688569999999985489199981799856
Q gi|255764489|r    2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQS   40 (250)
Q Consensus         2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S   40 (250)
                      ||||-=-||++.--+..-.+.|+..|.+|.++.|+..+.
T Consensus         3 kvlvll~~Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~~   41 (186)
T d1p5fa_           3 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDP   41 (186)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf             899992899789999999999997889899998269953


Done!