Query gi|255764489|ref|YP_003065094.2| stationary phase survival protein SurE [Candidatus Liberibacter asiaticus str. psy62] Match_columns 250 No_of_seqs 158 out of 1614 Neff 7.7 Searched_HMMs 13730 Date Wed Jun 1 08:14:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764489.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1j9ja_ c.106.1.1 (A:) SurE ho 100.0 0 0 577.1 22.2 243 1-249 1-247 (247) 2 d1l5xa_ c.106.1.1 (A:) SurE ho 100.0 0 0 541.8 24.4 235 1-240 1-246 (276) 3 d1pn3a_ c.87.1.5 (A:) TDP-epi- 95.3 0.065 4.8E-06 29.5 8.5 110 1-125 1-124 (391) 4 d1qo0d_ c.23.1.3 (D:) Positive 93.6 0.15 1.1E-05 27.3 7.2 35 1-38 12-46 (189) 5 d2bisa1 c.87.1.8 (A:1-437) Gly 91.9 0.13 9.6E-06 27.6 5.0 39 1-39 1-45 (437) 6 d1rzua_ c.87.1.8 (A:) Glycogen 90.0 0.23 1.7E-05 26.2 4.8 37 1-37 1-44 (477) 7 d1rrva_ c.87.1.5 (A:) TDP-vanc 85.9 0.52 3.8E-05 24.0 4.5 37 1-40 1-41 (401) 8 d1iira_ c.87.1.5 (A:) UDP-gluc 83.7 0.92 6.7E-05 22.5 4.9 112 1-126 1-126 (401) 9 d1vhqa_ c.23.16.2 (A:) Putativ 83.0 0.73 5.3E-05 23.1 4.2 40 1-40 1-46 (217) 10 d1g2ia_ c.23.16.2 (A:) Intrace 82.2 0.26 1.9E-05 25.8 1.7 38 1-38 1-38 (166) 11 d3clsc1 c.26.2.3 (C:1-262) Sma 78.0 1.2 8.7E-05 21.8 3.9 100 16-125 40-147 (262) 12 d2c1xa1 c.87.1.10 (A:7-456) UD 70.5 2.9 0.00021 19.4 4.3 22 16-37 18-39 (450) 13 d2iw1a1 c.87.1.8 (A:2-371) Lip 67.2 3.8 0.00028 18.7 5.0 67 16-89 19-85 (370) 14 d1udca_ c.2.1.2 (A:) Uridine d 66.5 2.3 0.00017 20.0 3.1 31 1-34 1-31 (338) 15 d2b4aa1 c.23.1.1 (A:2-119) Hyp 62.7 2.4 0.00017 20.0 2.6 31 1-34 3-33 (118) 16 d2pl1a1 c.23.1.1 (A:1-119) Pho 62.4 3.3 0.00024 19.0 3.3 80 1-125 1-80 (119) 17 d1kgsa2 c.23.1.1 (A:2-123) Pho 61.8 3.4 0.00025 19.0 3.3 81 1-126 2-82 (122) 18 d1ny5a1 c.23.1.1 (A:1-137) Tra 59.8 5.2 0.00038 17.9 4.0 80 1-125 1-80 (137) 19 d1efvb_ c.26.2.3 (B:) Small, b 56.5 5 0.00036 18.0 3.4 104 16-127 40-150 (252) 20 d1sy7a1 c.23.16.3 (A:553-736) 55.8 4.1 0.0003 18.5 2.8 42 2-43 5-46 (184) 21 d1jbea_ c.23.1.1 (A:) CheY pro 53.8 6.6 0.00048 17.2 3.8 82 1-125 5-87 (128) 22 d2c5aa1 c.2.1.2 (A:13-375) GDP 51.7 5.9 0.00043 17.5 3.1 31 1-34 16-46 (363) 23 d1cm3a_ d.94.1.1 (A:) Histidin 50.6 7 0.00051 17.1 3.4 77 2-80 5-81 (85) 24 d1dcfa_ c.23.1.2 (A:) Receiver 50.3 7 0.00051 17.1 3.3 30 1-33 8-37 (134) 25 d1w25a1 c.23.1.1 (A:2-140) Res 49.8 7.6 0.00055 16.9 5.9 80 2-125 3-83 (139) 26 d1a2oa1 c.23.1.1 (A:1-140) Met 48.4 6.5 0.00047 17.3 2.9 64 1-101 4-67 (140) 27 d1u9ca_ c.23.16.2 (A:) GK2698 47.4 8.3 0.0006 16.6 4.6 39 3-41 7-53 (221) 28 d1p80a1 c.23.16.3 (A:598-753) 47.0 8.4 0.00061 16.6 4.5 38 2-39 5-42 (156) 29 d1j6ua1 c.5.1.1 (A:0-88) UDP-N 45.2 8.9 0.00065 16.4 4.8 30 1-33 2-31 (89) 30 d1kewa_ c.2.1.2 (A:) dTDP-gluc 45.0 7.6 0.00056 16.8 2.8 30 1-33 1-30 (361) 31 d2blla1 c.2.1.2 (A:316-657) Po 44.1 8.9 0.00065 16.4 3.1 30 1-33 1-31 (342) 32 d1wd5a_ c.61.1.1 (A:) Putative 43.9 9.4 0.00068 16.3 4.0 24 93-116 119-145 (208) 33 d2qwxa1 c.23.5.3 (A:1-230) Qui 43.8 9.4 0.00068 16.3 3.4 33 1-33 3-39 (230) 34 d1lssa_ c.2.1.9 (A:) Ktn Mja21 43.5 9.2 0.00067 16.3 3.1 94 1-121 1-94 (132) 35 d1i24a_ c.2.1.2 (A:) Sulfolipi 43.0 9.6 0.0007 16.2 3.1 30 1-33 2-31 (393) 36 d1ka9h_ c.23.16.1 (H:) GAT sub 42.3 9.9 0.00072 16.1 5.5 30 1-33 1-30 (195) 37 d1o1xa_ c.121.1.1 (A:) Putativ 41.9 10 0.00073 16.1 3.3 116 1-157 3-133 (145) 38 d1vl0a_ c.2.1.2 (A:) DTDP-4-de 41.4 5.7 0.00041 17.6 1.7 30 1-33 2-31 (281) 39 d1zgza1 c.23.1.1 (A:2-121) Tor 40.2 11 0.00078 15.9 3.3 79 1-125 2-80 (120) 40 d1li4a2 c.23.12.3 (A:3-189,A:3 40.0 9.1 0.00066 16.4 2.6 64 17-89 59-128 (267) 41 d1ir6a_ c.107.1.2 (A:) Exonucl 39.3 9.2 0.00067 16.4 2.5 43 2-46 26-71 (385) 42 d1jaya_ c.2.1.6 (A:) Coenzyme 38.1 12 0.00084 15.7 3.0 35 1-38 1-35 (212) 43 d1qvwa_ c.23.16.2 (A:) Hypothe 38.0 12 0.00084 15.7 4.2 29 10-38 24-52 (236) 44 d2ayxa1 c.23.1.1 (A:817-949) S 36.3 12 0.00087 15.7 2.7 80 1-125 9-88 (133) 45 d1oc2a_ c.2.1.2 (A:) dTDP-gluc 35.3 10 0.00074 16.1 2.2 32 1-35 3-34 (346) 46 d1o1ya_ c.23.16.1 (A:) Hypothe 34.2 13 0.00097 15.4 4.4 34 1-36 4-37 (230) 47 d1oi4a1 c.23.16.2 (A:23-192) H 34.1 13 0.00097 15.4 5.5 42 2-43 3-44 (170) 48 d1yioa2 c.23.1.1 (A:3-130) Res 33.5 14 0.00099 15.3 5.8 29 2-33 4-32 (128) 49 d2hpra_ d.94.1.1 (A:) Histidin 33.3 11 0.00077 16.0 2.1 76 3-80 5-80 (87) 50 d1pcha_ d.94.1.1 (A:) Histidin 32.8 8.1 0.00059 16.7 1.4 77 2-80 4-80 (88) 51 d1ptfa_ d.94.1.1 (A:) Histidin 30.0 9.5 0.0007 16.2 1.4 76 3-80 6-81 (87) 52 d1sc6a2 c.23.12.1 (A:7-107,A:2 28.7 16 0.0012 14.8 2.8 27 1-33 5-31 (132) 53 d1mo1a_ d.94.1.1 (A:) Crh, cat 27.9 8.3 0.00061 16.6 0.8 79 2-82 5-83 (87) 54 d1p6qa_ c.23.1.1 (A:) CheY pro 27.8 9.1 0.00066 16.4 1.0 82 1-125 7-89 (129) 55 d2pq6a1 c.87.1.10 (A:8-480) (I 27.5 17 0.0013 14.7 2.8 22 16-37 18-39 (473) 56 d2c4ka2 c.61.1.2 (A:167-350) P 26.5 16 0.0012 14.8 2.1 18 99-116 90-108 (184) 57 d1mvoa_ c.23.1.1 (A:) PhoP rec 26.2 18 0.0013 14.5 3.2 80 2-126 4-83 (121) 58 d1n2sa_ c.2.1.2 (A:) dTDP-6-de 26.2 13 0.00093 15.5 1.5 29 1-33 1-29 (298) 59 d1pswa_ c.87.1.7 (A:) ADP-hept 25.5 13 0.00093 15.5 1.4 36 1-38 1-41 (348) 60 d1ka5a_ d.94.1.1 (A:) Histidin 24.6 20 0.0014 14.3 3.0 76 3-80 6-81 (88) 61 d1jvna2 c.23.16.1 (A:-3-229) G 23.9 20 0.0015 14.3 3.2 30 1-33 4-34 (232) 62 d1f6da_ c.87.1.3 (A:) UDP-N-ac 23.1 21 0.0015 14.2 4.9 149 1-167 1-174 (376) 63 d1dz3a_ c.23.1.1 (A:) Sporulat 22.2 18 0.0013 14.6 1.6 64 1-101 2-65 (123) 64 d2a9va1 c.23.16.1 (A:1-196) GM 21.3 23 0.0017 13.9 2.0 30 1-34 2-32 (196) 65 d1ydga_ c.23.5.8 (A:) Trp repr 20.5 24 0.0017 13.8 3.3 37 1-37 3-41 (201) 66 d1p5fa_ c.23.16.2 (A:) DJ-1 {H 20.3 24 0.0017 13.8 4.7 39 2-40 3-41 (186) No 1 >d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima [TaxId: 2336]} Probab=100.00 E-value=0 Score=577.13 Aligned_cols=243 Identities=28% Similarity=0.388 Sum_probs=227.9 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEE----EEEEECCCHHHHHHHHH Q ss_conf 92688268986885699999999854891999817998565032022489705889711----04763272799999998 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK----KRFAVHGTPVDCVVIAL 76 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~----~~~~v~GtPaDcv~~~l 76 (250) |||||||||||+||||++|+++|++ +|+|+||||++||||+|||||+++|++++++.. ..|+|+|||||||++|| T Consensus 1 M~ILltNDDGi~s~gl~~L~~~l~~-~~~V~vvAP~~~~S~~g~ait~~~~l~~~~~~~~~~~~~~~v~GTPaDcv~~al 79 (247) T d1j9ja_ 1 MRILVTNDDGIQSKGIIVLAELLSE-EHEVFVVAPDKERSATGHSITIHVPLWMKKVFISERVVAYSTTGTPADCVKLAY 79 (247) T ss_dssp CEEEEECSSCTTCHHHHHHHHHHTT-TSEEEEEEESSCCTTCTTCCCCSSCCCEEECCCSSSEEEEEESSCHHHHHHHHH T ss_pred CEEEEECCCCCCCHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCHHHHHHHHH T ss_conf 9599973799897679999999865-991999946998747712566799961388404888228986796289999865 Q ss_pred HHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 75046454199971488853102333457778998898718985322200135676614788888499999998677866 Q gi|255764489|r 77 QKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPN 156 (250) Q Consensus 77 ~~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~~~~~~~~~~a~~~~~~ii~~l~~~~~p~ 156 (250) +++++++|||||||||+|.|+|.|++|||||||||||+++||||||+||+.. +..+|+.+++++.++++++++.++|. T Consensus 80 ~~l~~~~pDlVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~gipsiA~S~~~~--~~~~~~~a~~~~~~li~~l~~~~~p~ 157 (247) T d1j9ja_ 80 NVVMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANY--ESPDFEGAARFLIDFLKEFDFSLLDP 157 (247) T ss_dssp HTTSTTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEESCS--SSCCHHHHHHHHHHHHHHCCGGGSCT T ss_pred HHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHH--CCCCHHHHHHHHHHHHHHHHHCCCCC T ss_conf 0002576557996554787544155667777799999853778412012220--16431677889999999997457764 Q ss_pred CCEEECCCCCCCCHHCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCEEEECCCCCCC Q ss_conf 73543145678810158838913766543554278406886516997236777789885507899689889902153564 Q gi|255764489|r 157 TTLCNINFPRCSPEEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLT 236 (250) Q Consensus 157 ~~vlNINiP~~~~~~ikg~k~t~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~TD~~Al~~GyISVTPL~~DlT 236 (250) +.+||||||. .++||+++|+||++.+...+.+..+++++.+||+.......+..++||.+|+++||||||||++||| T Consensus 158 ~~~lNVN~P~---~~~kG~k~t~~g~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~tD~~al~~GyISVTPL~~dlT 234 (247) T d1j9ja_ 158 FTMLNINVPA---GEIKGWRFTRQSRRRWNDYFEERVSPFGEKYYWMMGEVIEDDDRDDVDYKAVREGYVSITPIHPFLT 234 (247) T ss_dssp TCEEEEEECS---SCCCEEEECBCCCCEEEEEEEEEECTTSCEEEEEEEEEECCCCCSSBHHHHHHTTEEEEEEECSCCC T ss_pred CCCCCCCCCH---HHCCCCEEEEECCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHCCEEEEEECCCCCC T ss_conf 4201578980---4306843666213234553213007999706996367667889997299999799289803175876 Q ss_pred CHHHHHHHHHHHC Q ss_conf 8899999998745 Q gi|255764489|r 237 DYNSQQYISLSLE 249 (250) Q Consensus 237 ~~~~l~~L~~~l~ 249 (250) +++.|++|+++|| T Consensus 235 ~~~~l~~L~~~fd 247 (247) T d1j9ja_ 235 NEQCLKKLREVYD 247 (247) T ss_dssp CHHHHHHHHHHCC T ss_pred CHHHHHHHHHHHC T ss_conf 9899999998549 No 2 >d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Probab=100.00 E-value=0 Score=541.75 Aligned_cols=235 Identities=29% Similarity=0.418 Sum_probs=208.2 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEE---EEEEECCCHHHHHHHHHH Q ss_conf 92688268986885699999999854891999817998565032022489705889711---047632727999999987 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK---KRFAVHGTPVDCVVIALQ 77 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~---~~~~v~GtPaDcv~~~l~ 77 (250) |||||||||||+||||++|+++|+++| +|+||||++||||+|||||+++|+++++++. +.|+|+|||||||++||+ T Consensus 1 M~ILlTNDDGi~a~Gl~~L~~~l~~~g-~V~vvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~~v~GTPaDCV~lgl~ 79 (276) T d1l5xa_ 1 MKILVTNDDGVHSPGLRLLYQFALSLG-DVDVVAPESPKSATGLGITLHKPLRMYEVDLCGFRAIATSGTPSDTVYLATF 79 (276) T ss_dssp CEEEEECSSCTTCHHHHHHHHHHGGGS-EEEEEEESSCTTTSCSSCCCSSCBCEEEEECSSSEEEEESSCHHHHHHHHHH T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCC-CEEEEECCCCCCCCCCCEECCCCCEEEEEECCCCEEEEECCCCHHHHHHHHC T ss_conf 959997279989888999999998569-9899930998767625530799857999624884379973752645431021 Q ss_pred HCCCCCCCEEEECCCCCCCCCHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCC-----CCCCHHHHHHHHHHHHHHHHH Q ss_conf 50464541999714888531023334-577789988987189853222001356-----766147888884999999986 Q gi|255764489|r 78 KMSDKKPDLILSGVNVGTNTSNHVAY-SGTLAAAFEGSLQGIRSFALSQAYTYE-----NMIPWEVSETHAPRVLRQLLK 151 (250) Q Consensus 78 ~l~~~~pDlViSGiN~G~N~g~~v~y-SGTvgAA~ea~~~GipsIAiS~~~~~~-----~~~~~~~a~~~~~~ii~~l~~ 151 (250) ++ ++||||||||||+|.|+|.+++| ||||||||||+++|||||||||++... ....|+.+.+++.++++++++ T Consensus 80 ~~-~~~pDlVvSGIN~G~N~G~dv~~~SGTVgAA~Ea~~~GipsIA~S~~~~~~~~~~~~~~~~e~~~~~i~~l~~~~l~ 158 (276) T d1l5xa_ 80 GL-GRKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPALAYSAYLENWNELLNNKEAVEIMGAVVSSTASYVLK 158 (276) T ss_dssp HH-TSCCSEEEEEEEEBCCCSHHHHTTCHHHHHHHHHHHTTCCEEEEEECCSCHHHHHTCHHHHHHHHHHHHHHHHHHHH T ss_pred CC-CCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 57-99977899787677667840687116777899898618883156502257651224304567777777999999986 Q ss_pred CCCCCCC-EEECCCCCCCCHHCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCHHH-HHCCCEEEE Q ss_conf 7786673-54314567881015883891376654355427840688651699723677778988550789-968988990 Q gi|255764489|r 152 TQIPNTT-LCNINFPRCSPEEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFA-IQHNMISVT 229 (250) Q Consensus 152 ~~~p~~~-vlNINiP~~~~~~ikg~k~t~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~TD~~A-l~~GyISVT 229 (250) +++|.+. +||||||.++..++|+ ++|+++++.|...+.+..++++..|||+.. +. .+.+++||.++ +++|||||| T Consensus 159 ~~~p~~~~vlNVN~P~~~~~~ik~-~~t~~g~~~~~~~~~~~~dp~g~~yywl~g-~~-~~~~~~tD~~a~l~~GyISVT 235 (276) T d1l5xa_ 159 NGMPQGVDVISVNFPRRLGRGVRA-KLVKAAKLRYAQQVVERVDPRGVRYYWLYG-RD-LAPEPETDVYVVLKEGGIAIT 235 (276) T ss_dssp HCSCTTCSEEEEEECSCCCTTCCE-EECBCCSCSBCSCCEEEECTTSCEEEECSC-SB-CCCCTTBHHHHHHTSCCEEEE T ss_pred CCCCCCCEECCCCCHHCCCCCCCC-CEEEECCCCCCCCEEEEECCCCCEEEEECC-CC-CCCCCCCCHHHHHHCCEEEEE T ss_conf 565558501257810104546764-268725635543047865799976886157-75-788999889999979989994 Q ss_pred CCCCCCCCHHH Q ss_conf 21535648899 Q gi|255764489|r 230 PITTDLTDYNS 240 (250) Q Consensus 230 PL~~DlT~~~~ 240 (250) ||++|||+|+. T Consensus 236 PL~~DlT~~d~ 246 (276) T d1l5xa_ 236 PLTLNLNAVDA 246 (276) T ss_dssp EECCCCBSSCC T ss_pred EEEECCCCHHH T ss_conf 61105867577 No 3 >d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} Probab=95.27 E-value=0.065 Score=29.49 Aligned_cols=110 Identities=18% Similarity=0.212 Sum_probs=55.3 Q ss_pred CEEEEECCCCCCCHH----HHHHHHHHHHCCCCEEEECCCCCCC-----CEEEEECCCCCEEEEEEEEEEEEECCCH--- Q ss_conf 926882689868856----9999999985489199981799856-----5032022489705889711047632727--- Q gi|255764489|r 1 MRILLTNDDGIKSKG----LITLENIARSISDDIWICAPEMDQS-----CLANSLTMSRNIACRTISKKRFAVHGTP--- 68 (250) Q Consensus 1 m~ILitNDDG~~a~g----l~~l~~~l~~~~~~v~vvAP~~~~S-----~~~~ait~~~~~~~~~~~~~~~~v~GtP--- 68 (250) ||||++. +-+.| +.+|++.|.+.||+|++++|..-.. |... +.+...... ..........+.. T Consensus 1 mril~~~---~gt~Ghi~P~laLA~~L~~rGh~V~~~~~~~~~~~v~~~g~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~ 75 (391) T d1pn3a_ 1 MRVLITG---CGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPM-VPVGRAVRA-GAREPGELPPGAAEVV 75 (391) T ss_dssp CEEEEEE---ESSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCE-EECSSCSSG-GGSCTTCCCTTCGGGH T ss_pred CEEEEEC---CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCEE-EECCCCHHH-HHHCHHHHHHHHHHHH T ss_conf 9799985---8873689999999999998899899997803676898779848-987836877-7348566669999999 Q ss_pred HHHHHHHHHHCC--CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 999999987504--645419997148885310233345777899889871898532220 Q gi|255764489|r 69 VDCVVIALQKMS--DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250) Q Consensus 69 aDcv~~~l~~l~--~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250) ...+.--+..+. -+.||+||+.. .+.....++.-+...++|.+.+.. T Consensus 76 ~~~~~~~~~~l~~~~~~~D~vi~~~----------~~~~~~~~~~~a~~~~i~~~~~~~ 124 (391) T d1pn3a_ 76 TEVVAEWFDKVPAAIEGCDAVVTTG----------LLPAAVAVRSMAEKLGIPYRYTVL 124 (391) T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEE----------CHHHHHHHHHHHHHHTCCEEEEES T ss_pred HHHHHHHHHHHHHHHCCCCEEEECC----------CCCHHHHHHHHHHHCCCCEEEEEC T ss_conf 9999999999999730798478734----------471378999999980876488531 No 4 >d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]} Probab=93.62 E-value=0.15 Score=27.31 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=27.8 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCC Q ss_conf 92688268986885699999999854891999817998 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMD 38 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~ 38 (250) |||||..||-.. -+.|...|+..|++|..+++..+ T Consensus 12 ~~iLvvdd~~~~---~~~l~~~L~~~G~~v~~~~~~~~ 46 (189) T d1qo0d_ 12 LQVLVLNPPGEV---SDALVLQLIRIGCSVRQCWPPPE 46 (189) T ss_dssp CEEEEESCTTHH---HHHHHHHHHHHTCEEEEECSCCS T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCCCEECCCHHH T ss_conf 979999689999---99999999986996230479889 No 5 >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Probab=91.88 E-value=0.13 Score=27.64 Aligned_cols=39 Identities=18% Similarity=0.378 Sum_probs=28.1 Q ss_pred CEEEEECCCCCC--CHHH----HHHHHHHHHCCCCEEEECCCCCC Q ss_conf 926882689868--8569----99999998548919998179985 Q gi|255764489|r 1 MRILLTNDDGIK--SKGL----ITLENIARSISDDIWICAPEMDQ 39 (250) Q Consensus 1 m~ILitNDDG~~--a~gl----~~l~~~l~~~~~~v~vvAP~~~~ 39 (250) ||||+.=....= .-|+ ..|+++|++.||+|+|++|..++ T Consensus 1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp~~~~ 45 (437) T d2bisa1 1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGR 45 (437) T ss_dssp CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTS T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 987998774588455879999999999999769989999058986 No 6 >d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Probab=90.05 E-value=0.23 Score=26.18 Aligned_cols=37 Identities=19% Similarity=0.142 Sum_probs=27.6 Q ss_pred CEEEEECCCCC---CCHHH----HHHHHHHHHCCCCEEEECCCC Q ss_conf 92688268986---88569----999999985489199981799 Q gi|255764489|r 1 MRILLTNDDGI---KSKGL----ITLENIARSISDDIWICAPEM 37 (250) Q Consensus 1 m~ILitNDDG~---~a~gl----~~l~~~l~~~~~~v~vvAP~~ 37 (250) ||||..+---+ ..-|| ..|.++|.+.||+|+|++|.- T Consensus 1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi~P~y 44 (477) T d1rzua_ 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGY 44 (477) T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECC T ss_pred CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 98999977220633267689999999999997699699996698 No 7 >d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} Probab=85.90 E-value=0.52 Score=23.98 Aligned_cols=37 Identities=24% Similarity=0.515 Sum_probs=27.5 Q ss_pred CEEEEECCCCCCCHH----HHHHHHHHHHCCCCEEEECCCCCCC Q ss_conf 926882689868856----9999999985489199981799856 Q gi|255764489|r 1 MRILLTNDDGIKSKG----LITLENIARSISDDIWICAPEMDQS 40 (250) Q Consensus 1 m~ILitNDDG~~a~g----l~~l~~~l~~~~~~v~vvAP~~~~S 40 (250) ||||++= +-+.| +.+|+++|.+.||+|+++++...++ T Consensus 1 mrIl~~~---~gt~Ghv~P~l~lA~~L~~rGh~V~~~t~~~~~~ 41 (401) T d1rrva_ 1 MRVLLSV---CGTRGDVEIGVALADRLKALGVQTRMCAPPAAEE 41 (401) T ss_dssp CEEEEEE---ESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHH T ss_pred CEEEEEC---CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHH T ss_conf 9499988---9875689999999999998799899997834677 No 8 >d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} Probab=83.70 E-value=0.92 Score=22.46 Aligned_cols=112 Identities=16% Similarity=0.222 Sum_probs=53.4 Q ss_pred CEEEEECCCCCCC-----HHHHHHHHHHHHCCCCEEEECCCCCCCCEEEE-EC---CCCCEEEEEEE---EEEEEECCCH Q ss_conf 9268826898688-----56999999998548919998179985650320-22---48970588971---1047632727 Q gi|255764489|r 1 MRILLTNDDGIKS-----KGLITLENIARSISDDIWICAPEMDQSCLANS-LT---MSRNIACRTIS---KKRFAVHGTP 68 (250) Q Consensus 1 m~ILitNDDG~~a-----~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~a-it---~~~~~~~~~~~---~~~~~v~GtP 68 (250) ||||++= +-+ | +.+|+++|.+.||+|+++++...++-.-.+ +. +..+....... .....+...- T Consensus 1 mkil~~~---~gt~Gh~~P-~lala~~L~~~Gh~V~~~~~~~~~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 76 (401) T d1iira_ 1 MRVLLAT---CGSRGDTEP-LVALAVRVRDLGADVRMCAPPDCAERLAEVGVPHVPVGPSARAPIQRAKPLTAEDVRRFT 76 (401) T ss_dssp CEEEEEC---CSCHHHHHH-HHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEECCC-------CCSCCCHHHHHHHH T ss_pred CEEEEEC---CCCHHHHHH-HHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEECCCCHHHHHHCCCCCHHHHHHHHH T ss_conf 9799988---987268999-999999999879989999683067789876974897785065454103520079999999 Q ss_pred HHHHHHHHHHC--CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 99999998750--46454199971488853102333457778998898718985322200 Q gi|255764489|r 69 VDCVVIALQKM--SDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250) Q Consensus 69 aDcv~~~l~~l--~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250) ...+.--+..+ ..+.+|.++.- ..++-.+++...+...++|...++.. T Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~a~~~~~~~~~~~~~ 126 (401) T d1iira_ 77 TEAIATQFDEIPAAAEGCAAVVTT----------GLLAAAIGVRSVAEKLGIPYFYAFHC 126 (401) T ss_dssp HHHHHHHHHHHHHHTTTCSEEEEE----------SCHHHHHHHHHHHHHHTCCEEEEESS T ss_pred HHHHHHHHHHHHHHHHCCCCEEEE----------ECCHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 999999999999976147642774----------12425788898888753542234456 No 9 >d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Probab=83.03 E-value=0.73 Score=23.08 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=32.5 Q ss_pred CE---EEEEC---CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC Q ss_conf 92---68826---898688569999999985489199981799856 Q gi|255764489|r 1 MR---ILLTN---DDGIKSKGLITLENIARSISDDIWICAPEMDQS 40 (250) Q Consensus 1 m~---ILitN---DDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S 40 (250) |+ |+|++ =||.+-.-+...+..|+..|++|.+++|+..|- T Consensus 1 MkKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~~sp~~~~~ 46 (217) T d1vhqa_ 1 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQV 46 (217) T ss_dssp CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCS T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC T ss_conf 9879999558888774209899999999998899899994699845 No 10 >d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=82.20 E-value=0.26 Score=25.78 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=34.3 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCC Q ss_conf 92688268986885699999999854891999817998 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMD 38 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~ 38 (250) |||++-=-||++.--+...++.|++.|++|.+++|+.+ T Consensus 1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~ 38 (166) T d1g2ia_ 1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERG 38 (166) T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 98999938986899999999999988998999968882 No 11 >d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Probab=77.97 E-value=1.2 Score=21.76 Aligned_cols=100 Identities=15% Similarity=0.202 Sum_probs=60.2 Q ss_pred HHHHHHHHH---HCCC--CEEE--ECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHH-CCCCCCCEE Q ss_conf 999999998---5489--1999--8179985650320224897058897110476327279999999875-046454199 Q gi|255764489|r 16 LITLENIAR---SISD--DIWI--CAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQK-MSDKKPDLI 87 (250) Q Consensus 16 l~~l~~~l~---~~~~--~v~v--vAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~-l~~~~pDlV 87 (250) ..+|..+|+ +.|. +|++ +.|...+...-.++..+-. +...+.++.++-.-+-+ +-..|.. +....|||| T Consensus 40 ~~AlE~Al~lke~~gg~~~Vtvvt~Gp~~a~~~Lr~alAmGaD-~avli~d~~~~~~d~~~--tA~~lA~~i~~~~~DLI 116 (262) T d3clsc1 40 DFSLEEAMKIKESSDTDVEVVVVSVGPDRVDESLRKCLAKGAD-RAVRVWDDAAEGSDAIV--VGRILTEVIKKEAPDMV 116 (262) T ss_dssp HHHHHHHHHHHHHCSSCCEEEEEEESCTTHHHHHHHHHHTTCS-EEEEECCGGGTTCCHHH--HHHHHHHHHHHHCCSEE T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCHHHH--HHHHHHHHHHCCCCCEE T ss_conf 9999999999854798359999961663678999999860797-36999604556612888--99999998623488689 Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 97148885310233345777899889871898532220 Q gi|255764489|r 88 LSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250) Q Consensus 88 iSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250) +.|--... .++|.||+.. |.+.|+|.+..-. T Consensus 117 l~G~~s~D------~~~gqvg~~l-Ae~Lg~P~vt~v~ 147 (262) T d3clsc1 117 FAGVQSSD------QAYASTGISV-ASYLNWPHAAVVA 147 (262) T ss_dssp EEESCCTT------TCCCCHHHHH-HHHHTCCEEEEEE T ss_pred EEEEECCC------CCCCHHHHHH-HHHCCCCEEEEEE T ss_conf 99632147------7756377999-9873886477887 No 12 >d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid 3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId: 29760]} Probab=70.47 E-value=2.9 Score=19.42 Aligned_cols=22 Identities=5% Similarity=-0.062 Sum_probs=17.6 Q ss_pred HHHHHHHHHHCCCCEEEECCCC Q ss_conf 9999999985489199981799 Q gi|255764489|r 16 LITLENIARSISDDIWICAPEM 37 (250) Q Consensus 16 l~~l~~~l~~~~~~v~vvAP~~ 37 (250) +..|+++|.+.||+|+++.+.. T Consensus 18 ~l~la~~L~~rGH~Vt~~~~~~ 39 (450) T d2c1xa1 18 LLAVVRRLAAAAPHAVFSFFST 39 (450) T ss_dssp HHHHHHHHHHHCTTSEEEEEEC T ss_pred HHHHHHHHHHCCCCEEEEECCC T ss_conf 9999999997799689997668 No 13 >d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Probab=67.15 E-value=3.8 Score=18.70 Aligned_cols=67 Identities=6% Similarity=0.195 Sum_probs=35.0 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 99999999854891999817998565032022489705889711047632727999999987504645419997 Q gi|255764489|r 16 LITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSDKKPDLILS 89 (250) Q Consensus 16 l~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~~~pDlViS 89 (250) +..|+++|.+.||+|+|+++..+. .....+++..+....+.-.+........-...+...+||+|++ T Consensus 19 ~~~la~~L~~~G~~V~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~ 85 (370) T d2iw1a1 19 FMRIASTVAARGHHVRVYTQSWEG-------DCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVG 85 (370) T ss_dssp HHHHHHHHHHTTCCEEEEESEECS-------CCCTTCEEEECCCCCSSHHHHHHHHHHHHHHHHHHSCCSEEEE T ss_pred HHHHHHHHHHCCCEEEEEECCCCC-------CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 999999999779979999567877-------8888638998676554430115889999999998616552531 No 14 >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Probab=66.54 E-value=2.3 Score=20.04 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=24.5 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 9268826898688569999999985489199981 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICA 34 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvA 34 (250) ||||||=-.|+=.. .|++.|.+.|++|+++. T Consensus 1 MKiLItG~tGfIG~---~l~~~L~~~g~~V~~~d 31 (338) T d1udca_ 1 MRVLVTGGSGYIGS---HTCVQLLQNGHDVIILD 31 (338) T ss_dssp CEEEEETTTSHHHH---HHHHHHHHTTCEEEEEE T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCEEEEEE T ss_conf 97999898878999---99999997849799997 No 15 >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} Probab=62.72 E-value=2.4 Score=19.95 Aligned_cols=31 Identities=10% Similarity=0.271 Sum_probs=22.5 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 9268826898688569999999985489199981 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICA 34 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvA 34 (250) |||||..||-.... .+.+.|+..|++|.++. T Consensus 3 ~rILvVdDd~~~~~---~l~~~L~~~g~~v~~~~ 33 (118) T d2b4aa1 3 FRVTLVEDEPSHAT---LIQYHLNQLGAEVTVHP 33 (118) T ss_dssp CEEEEECSCHHHHH---HHHHHHHHTTCEEEEES T ss_pred CEEEEEECCHHHHH---HHHHHHHHCCCCEEEEC T ss_conf 87999989899999---99999996299729979 No 16 >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} Probab=62.38 E-value=3.3 Score=19.05 Aligned_cols=80 Identities=13% Similarity=0.179 Sum_probs=48.9 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) |||||.-||-.. ...|.+.|+..|++|.. |.. +. -|+..+. T Consensus 1 mrILvVDDd~~~---~~~l~~~L~~~G~~v~~-a~~-------------------------------g~----eal~~l~ 41 (119) T d2pl1a1 1 MRVLVVEDNALL---RHHLKVQIQDAGHQVDD-AED-------------------------------AK----EADYYLN 41 (119) T ss_dssp CEEEEECSCHHH---HHHHHHHHHHTTCEEEE-ESS-------------------------------HH----HHHHHHH T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEE-ECC-------------------------------HH----HHHHHHH T ss_conf 989999689999---99999999987999999-788-------------------------------79----9999998 Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 645419997148885310233345777899889871898532220 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250) ..+||+||.-++...--|.+++. .+......+|-|.+|- T Consensus 42 ~~~~dliilD~~mP~~~G~e~~~------~i~~~~~~~pvi~lt~ 80 (119) T d2pl1a1 42 EHIPDIAIVDLGLPDEDGLSLIR------RWRSNDVSLPILVLTA 80 (119) T ss_dssp HSCCSEEEECSCCSSSCHHHHHH------HHHHTTCCSCEEEEES T ss_pred HCCCCEEEHHCCCCCCHHHHHHH------HHHHCCCCCCEEEEEC T ss_conf 34645553420399950588999------9986296654576541 No 17 >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} Probab=61.76 E-value=3.4 Score=19.00 Aligned_cols=81 Identities=9% Similarity=0.089 Sum_probs=49.6 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) |||||.-||-.. ...|.+.|+..|++|.++. +..++ +..+. T Consensus 2 irILiVdDd~~~---~~~l~~~L~~~g~~v~~a~--------------------------------~~~~a----l~~l~ 42 (122) T d1kgsa2 2 VRVLVVEDERDL---ADLITEALKKEMFTVDVCY--------------------------------DGEEG----MYMAL 42 (122) T ss_dssp CEEEEECSSHHH---HHHHHHHHHHTTCEEEEES--------------------------------SHHHH----HHHHH T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEEC--------------------------------CHHHH----HHHHH T ss_conf 789999189999---9999999998799999975--------------------------------66999----99998 Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 6454199971488853102333457778998898718985322200 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250) ..+|||||.-++...--|.+++. .+-.....+|-|.+|.. T Consensus 43 ~~~~dlillD~~mp~~~g~~~~~------~lr~~~~~~piI~lt~~ 82 (122) T d1kgsa2 43 NEPFDVVILDIMLPVHDGWEILK------SMRESGVNTPVLMLTAL 82 (122) T ss_dssp HSCCSEEEEESCCSSSCHHHHHH------HHHHTTCCCCEEEEESS T ss_pred HHCCCCCCCCCCCCCCHHHHHHH------HHHHCCCCCCEEEECCC T ss_conf 62765220013556621678999------99853899848997277 No 18 >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Probab=59.79 E-value=5.2 Score=17.86 Aligned_cols=80 Identities=13% Similarity=0.080 Sum_probs=43.4 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) |||||.-||=.. ...|.+.|+..|++|..+. + +. -|+..+. T Consensus 1 mkILiVDDd~~~---~~~l~~~L~~~g~~v~~a~-~-------------------------------~~----eAl~~l~ 41 (137) T d1ny5a1 1 MNVLVIEDDKVF---RGLLEEYLSMKGIKVESAE-R-------------------------------GK----EAYKLLS 41 (137) T ss_dssp CEEEEECCCHHH---HHHHHHHHHHHTCEEEEES-S-------------------------------HH----HHHHHHH T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEEC-C-------------------------------HH----HHHHHHH T ss_conf 979999558999---9999999998799999988-8-------------------------------99----9998730 Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 645419997148885310233345777899889871898532220 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250) ..+||+||.-++...=-|.+++ ..+-.....+|-|.+|- T Consensus 42 ~~~~dlvilD~~mp~~~G~e~~------~~lr~~~~~~piI~lT~ 80 (137) T d1ny5a1 42 EKHFNVVLLDLLLPDVNGLEIL------KWIKERSPETEVIVITG 80 (137) T ss_dssp HSCCSEEEEESBCSSSBHHHHH------HHHHHHCTTSEEEEEEE T ss_pred CCCCCCCHHHHHHHHHHHHHHH------HHHHHHCCCCCEEEEEC T ss_conf 2555530177766544689999------99998488998998989 No 19 >d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]} Probab=56.46 E-value=5 Score=17.97 Aligned_cols=104 Identities=14% Similarity=0.104 Sum_probs=53.4 Q ss_pred HHHHHHHH--HH-CCCC-EEE--ECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHH-CCCCCCCEEE Q ss_conf 99999999--85-4891-999--8179985650320224897058897110476327279999999875-0464541999 Q gi|255764489|r 16 LITLENIA--RS-ISDD-IWI--CAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQK-MSDKKPDLIL 88 (250) Q Consensus 16 l~~l~~~l--~~-~~~~-v~v--vAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~-l~~~~pDlVi 88 (250) ..+|..++ ++ .|.. |++ ..|....+..-.++..+-.- ...+......-.+.-+-++...+-. .....||||+ T Consensus 40 ~~AlE~Al~lke~~gg~~v~v~~~gp~~a~~~lr~ala~Gad~-avli~~~~~~~~~~~~~~~a~~~a~~~~~~~~DLIl 118 (252) T d1efvb_ 40 EIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGADR-GIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVL 118 (252) T ss_dssp HHHHHHHHHHHHTTSCSEEEEEEEESTTHHHHHHHHHHHTCSE-EEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEE T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEE T ss_conf 9999999997650488359999726266799999998547862-499972310243221999999999987542998999 Q ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 714888531023334577789988987189853222001 Q gi|255764489|r 89 SGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAY 127 (250) Q Consensus 89 SGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~ 127 (250) .|-..- | .++|-||+.+ |.++|+|.+..-... T Consensus 119 ~G~~s~-----D-~~tgqVg~~l-Ae~Lg~P~vt~v~~i 150 (252) T d1efvb_ 119 LGKQAI-----D-DDCNQTGQMT-AGFLDWPQGTFASQV 150 (252) T ss_dssp EESCCT-----T-TCCCCHHHHH-HHHHTCCEEEEEEEE T ss_pred EECCCH-----H-CCCCCHHHHH-HHHCCCCCEEEEEEE T ss_conf 944320-----0-3677077787-875597733689999 No 20 >d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} Probab=55.77 E-value=4.1 Score=18.50 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=33.4 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEE Q ss_conf 268826898688569999999985489199981799856503 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLA 43 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~ 43 (250) ||.+-=-||++...+..+.+.++..|.+|.+++|+..+--.+ T Consensus 5 kI~ilv~dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~~v~~~ 46 (184) T d1sy7a1 5 RVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAA 46 (184) T ss_dssp EEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBT T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC T ss_conf 899995599759999999999997899899998117733432 No 21 >d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]} Probab=53.75 E-value=6.6 Score=17.25 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=47.2 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) |||||.-||-.. .+.+.+.|+..|...+..|- +|. -|+..+. T Consensus 5 lriLvVDD~~~~---r~~i~~~L~~~g~~~v~~a~-----------------------------~g~------~a~~~~~ 46 (128) T d1jbea_ 5 LKFLVVDDFSTM---RRIVRNLLKELGFNNVEEAE-----------------------------DGV------DALNKLQ 46 (128) T ss_dssp CCEEEECSCHHH---HHHHHHHHHHTTCCCEEEES-----------------------------SHH------HHHHHHT T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCCEEEEEC-----------------------------CCH------HHHHHHH T ss_conf 989999698999---99999999987994899966-----------------------------856------7999985 Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHH-HHHHHCCCCCCCCC Q ss_conf 6454199971488853102333457778998-89871898532220 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAF-EGSLQGIRSFALSQ 125 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~-ea~~~GipsIAiS~ 125 (250) ..+||+||..+|.-.--|.+++- .-+ ......+|=|.+|- T Consensus 47 ~~~~dlii~D~~mP~~dG~el~~-----~ir~~~~~~~~piI~lt~ 87 (128) T d1jbea_ 47 AGGYGFVISDWNMPNMDGLELLK-----TIRADGAMSALPVLMVTA 87 (128) T ss_dssp TCCCCEEEEESCCSSSCHHHHHH-----HHHC--CCTTCCEEEEES T ss_pred CCCCCEEEEECCCCCCCHHHHHH-----HHHHCCCCCCCCEEEEEC T ss_conf 47998899744644588899999-----998476678996899977 No 22 >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=51.75 E-value=5.9 Score=17.53 Aligned_cols=31 Identities=10% Similarity=0.184 Sum_probs=23.4 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 9268826898688569999999985489199981 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICA 34 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvA 34 (250) ||||||=--|+=.. .|.+.|.+.||+|+++. T Consensus 16 MKILVTGgsGfIGs---~lv~~L~~~g~~V~~~d 46 (363) T d2c5aa1 16 LKISITGAGGFIAS---HIARRLKHEGHYVIASD 46 (363) T ss_dssp CEEEEETTTSHHHH---HHHHHHHHTTCEEEEEE T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCEEEEEE T ss_conf 87999788878999---99999997829899996 No 23 >d1cm3a_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Escherichia coli [TaxId: 562]} Probab=50.60 E-value=7 Score=17.08 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=50.6 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 2688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) .+-|+|-.|++|---..|++.++++..+|++.. ..+..-+.|+.----|.+++-+.=...++|.=+.-+.-+|..++ T Consensus 5 ~v~I~n~~GLHARPAa~lv~~a~~f~s~i~i~~--~~~~~~akSi~~lm~L~~~~G~~i~i~~~G~De~~A~~~l~~~~ 81 (85) T d1cm3a_ 5 EVTITAPNGLDTRPAAQFVKEAKGFTSEITVTS--NGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLM 81 (85) T ss_dssp EEECC-CCCSCHHHHHHHHHHHHTSCSEEEEEE--TTEEEETTCHHHHTTSCCCTTCEEEEEEESTTHHHHHHHHHHHH T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEE--CCEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH T ss_conf 999859996526299999999985899899999--99998438199998559999899999997889999999999999 No 24 >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=50.26 E-value=7 Score=17.07 Aligned_cols=30 Identities=7% Similarity=0.361 Sum_probs=22.1 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 926882689868856999999998548919998 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250) |||||.-||-.. ...+.+.|+..|++|.++ T Consensus 8 ~rILvVDD~~~~---~~~l~~~L~~~G~~v~~a 37 (134) T d1dcfa_ 8 LKVLVMDENGVS---RMVTKGLLVHLGCEVTTV 37 (134) T ss_dssp CEEEEECSCHHH---HHHHHHHHHHTTCEEEEE T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEE T ss_conf 999999599999---999999999879999998 No 25 >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Probab=49.80 E-value=7.6 Score=16.86 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=48.5 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC Q ss_conf 26882689868856999999998548919998179985650320224897058897110476327279999999875046 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD 81 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~ 81 (250) ||||.-||-.. ...|.+.|+..|++|.++. ++.++. ..+.. T Consensus 3 rILiVDD~~~~---~~~l~~~L~~~g~~v~~a~--------------------------------~~~eal----~~~~~ 43 (139) T d1w25a1 3 RILVVDDIEAN---VRLLEAKLTAEYYEVSTAM--------------------------------DGPTAL----AMAAR 43 (139) T ss_dssp EEEEECSSTTH---HHHHHHHHHHTTCEEEEES--------------------------------SHHHHH----HHHHH T ss_pred EEEEEECCHHH---HHHHHHHHHHCCCEEEEEC--------------------------------CCHHHH----HHHHC T ss_conf 89999898999---9999999998799999974--------------------------------632545----54313 Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHH-HHHHCCCCCCCCC Q ss_conf 4541999714888531023334577789988-9871898532220 Q gi|255764489|r 82 KKPDLILSGVNVGTNTSNHVAYSGTLAAAFE-GSLQGIRSFALSQ 125 (250) Q Consensus 82 ~~pDlViSGiN~G~N~g~~v~ySGTvgAA~e-a~~~GipsIAiS~ 125 (250) .+||||+..++.-.--|.++... .++ .....+|=|.+|- T Consensus 44 ~~~dlil~D~~~p~~~G~~~~~~-----ir~~~~~~~~piI~lt~ 83 (139) T d1w25a1 44 DLPDIILLDVMMPGMDGFTVCRK-----LKDDPTTRHIPVVLITA 83 (139) T ss_dssp HCCSEEEEESCCSSSCHHHHHHH-----HHHSTTTTTSCEEEEEC T ss_pred CCCEEEEEECCCCCCCCHHHHHH-----HHHCCCCCCCCEEEEEC T ss_conf 54102211012468984288877-----66413246898899970 No 26 >d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Probab=48.39 E-value=6.5 Score=17.26 Aligned_cols=64 Identities=22% Similarity=0.327 Sum_probs=35.7 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) |||||.-||-... ..|.+.|+..|+ ..+|+- +-| +. -|+..+. T Consensus 4 irVLiVDD~~~~r---~~l~~~L~~~g~-~~~v~~---------------------------a~~--g~----~al~~~~ 46 (140) T d1a2oa1 4 IRVLSVDDSALMR---QIMTEIINSHSD-MEMVAT---------------------------APD--PL----VARDLIK 46 (140) T ss_dssp EEEEEECSCHHHH---HHHHHHHHTSTT-EEEEEE---------------------------ESS--HH----HHHHHHH T ss_pred CEEEEEECCHHHH---HHHHHHHHHCCC-EEEEEE---------------------------ECC--HH----HHHHHHH T ss_conf 9999995989999---999999996899-189999---------------------------799--99----9999998 Q ss_pred CCCCCEEEECCCCCCCCCHHH Q ss_conf 645419997148885310233 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHV 101 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v 101 (250) ..+||+||.-++...--|.++ T Consensus 47 ~~~pDlvllDi~MP~~dG~e~ 67 (140) T d1a2oa1 47 KFNPDVLTLDVEMPRMDGLDF 67 (140) T ss_dssp HHCCSEEEEECCCSSSCHHHH T ss_pred HCCCCEEEECCCCCCCCHHHH T ss_conf 459899997588899988999 No 27 >d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Probab=47.39 E-value=8.3 Score=16.63 Aligned_cols=39 Identities=10% Similarity=0.092 Sum_probs=29.9 Q ss_pred EEEECCC--------CCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC Q ss_conf 6882689--------86885699999999854891999817998565 Q gi|255764489|r 3 ILLTNDD--------GIKSKGLITLENIARSISDDIWICAPEMDQSC 41 (250) Q Consensus 3 ILitNDD--------G~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~ 41 (250) |++||-+ |+...-+..-++.|++.|++|.++.|...+-- T Consensus 7 iv~s~~~~~~~~~~tG~~~~E~~~P~~~l~~aG~~V~~aS~~gg~~~ 53 (221) T d1u9ca_ 7 MVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVP 53 (221) T ss_dssp EEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCC T ss_pred EEECCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCE T ss_conf 99668012168875530399999999999988997999964898520 No 28 >d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} Probab=47.04 E-value=8.4 Score=16.60 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=32.1 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 26882689868856999999998548919998179985 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQ 39 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~ 39 (250) ||.|-=-||++..-+..++++|++.|.+|.+++|.... T Consensus 5 kVaiLv~dg~~~~e~~~~~~~l~~ag~~v~~v~~~~~~ 42 (156) T d1p80a1 5 VVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGE 42 (156) T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSE T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 89999679988899999999999789989997524454 No 29 >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Probab=45.22 E-value=8.9 Score=16.43 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=26.3 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 926882689868856999999998548919998 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250) |||-+. ||---|+.+|++.|.+.|+.|.-. T Consensus 2 ~~ihfi---GIgG~GMs~LA~~L~~~G~~VsGS 31 (89) T d1j6ua1 2 MKIHFV---GIGGIGMSAVALHEFSNGNDVYGS 31 (89) T ss_dssp CEEEEE---TTTSHHHHHHHHHHHHTTCEEEEE T ss_pred CEEEEE---EECHHHHHHHHHHHHHCCCEEEEE T ss_conf 689999---577899999999999689969987 No 30 >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Probab=45.03 E-value=7.6 Score=16.84 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=22.2 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 926882689868856999999998548919998 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250) ||||||=--|+-.. .|.+.|.+.|++|+++ T Consensus 1 MkILItG~tGfIGs---~l~~~L~~~g~~vv~~ 30 (361) T d1kewa_ 1 MKILITGGAGFIGS---AVVRHIIKNTQDTVVN 30 (361) T ss_dssp CEEEEESTTSHHHH---HHHHHHHHHCSCEEEE T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCCEEEE T ss_conf 97999888767999---9999999779978999 No 31 >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Probab=44.09 E-value=8.9 Score=16.42 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=21.1 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCC-CEEEE Q ss_conf 9268826898688569999999985489-19998 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISD-DIWIC 33 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~-~v~vv 33 (250) ||||||--.|+= | +.|++.|.+.|| +|+++ T Consensus 1 MKILITG~tGfi--G-~~l~~~Ll~~g~~~V~~l 31 (342) T d2blla1 1 MRVLILGVNGFI--G-NHLTERLLREDHYEVYGL 31 (342) T ss_dssp CEEEEETCSSHH--H-HHHHHHHHHSTTCEEEEE T ss_pred CEEEEECCCCHH--H-HHHHHHHHHCCCCEEEEE T ss_conf 979998987589--9-999999997799889999 No 32 >d1wd5a_ c.61.1.1 (A:) Putative phosphoribosyltransferase TT1426 (TTHA1462) {Thermus thermophilus [TaxId: 274]} Probab=43.89 E-value=9.4 Score=16.30 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=13.4 Q ss_pred CCCCCC--HHHHH-HHHHHHHHHHHHH Q ss_conf 885310--23334-5777899889871 Q gi|255764489|r 93 VGTNTS--NHVAY-SGTLAAAFEGSLQ 116 (250) Q Consensus 93 ~G~N~g--~~v~y-SGTvgAA~ea~~~ 116 (250) .|.++= +|++. -+|+-||.+.... T Consensus 119 ~gk~ViLVDD~I~TG~T~~aa~~~L~~ 145 (208) T d1wd5a_ 119 KGRDVVLVDDGVATGASMEAALSVVFQ 145 (208) T ss_dssp TTSEEEEECSCBSSCHHHHHHHHHHHT T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHH T ss_conf 898899970400135789999999995 No 33 >d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]} Probab=43.81 E-value=9.4 Score=16.29 Aligned_cols=33 Identities=3% Similarity=-0.036 Sum_probs=16.6 Q ss_pred CEEEEECCC----CCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 926882689----868856999999998548919998 Q gi|255764489|r 1 MRILLTNDD----GIKSKGLITLENIARSISDDIWIC 33 (250) Q Consensus 1 m~ILitNDD----G~~a~gl~~l~~~l~~~~~~v~vv 33 (250) ||||+-|.. ++..-=.++..+.+++.||+|.+. T Consensus 3 mKiLiI~ghp~~~S~t~~l~~~~~~~~~~~g~ev~~~ 39 (230) T d2qwxa1 3 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVS 39 (230) T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEE T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 8799998279985689999999999999679979999 No 34 >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=43.49 E-value=9.2 Score=16.34 Aligned_cols=94 Identities=17% Similarity=0.234 Sum_probs=49.9 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) |||+|. |+..-|. .|++.|.+.|++|.|+-.+.++=- +. . . +. ....+.|-+.|=-.+---++ T Consensus 1 M~IvI~---G~G~~G~-~la~~L~~~g~~v~vid~d~~~~~--~~-~--~-----~~--~~~vi~Gd~~~~~~l~~~~i- 63 (132) T d1lssa_ 1 MYIIIA---GIGRVGY-TLAKSLSEKGHDIVLIDIDKDICK--KA-S--A-----EI--DALVINGDCTKIKTLEDAGI- 63 (132) T ss_dssp CEEEEE---CCSHHHH-HHHHHHHHTTCEEEEEESCHHHHH--HH-H--H-----HC--SSEEEESCTTSHHHHHHTTT- T ss_pred CEEEEE---CCCHHHH-HHHHHHHHCCCCCCEECCCHHHHH--HH-H--H-----HH--HHHHCCCCCCCHHHHHHCCH- T ss_conf 989998---9889999-999999977997200217846502--10-1--1-----10--03431474431165665072- Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 64541999714888531023334577789988987189853 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSF 121 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsI 121 (250) ++.|.+++-.+.- .-.+-+++-+..+|.+-+ T Consensus 64 -~~a~~vv~~t~~d---------~~N~~~~~~~k~~~~~~i 94 (132) T d1lssa_ 64 -EDADMYIAVTGKE---------EVNLMSSLLAKSYGINKT 94 (132) T ss_dssp -TTCSEEEECCSCH---------HHHHHHHHHHHHTTCCCE T ss_pred -HHHHHHCCCCCCH---------HHHHHHHHHHHHCCCCEE T ss_conf -4543222467758---------888898889987599669 No 35 >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=43.05 E-value=9.6 Score=16.22 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=23.6 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 926882689868856999999998548919998 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250) ||||||=--|+- | ..|++.|.+.||+|+++ T Consensus 2 ~kILVTGatGfi--G-~~lv~~Ll~~g~~V~~i 31 (393) T d1i24a_ 2 SRVMVIGGDGYC--G-WATALHLSKKNYEVCIV 31 (393) T ss_dssp CEEEEETTTSHH--H-HHHHHHHHHTTCEEEEE T ss_pred CEEEEECCCCHH--H-HHHHHHHHHCCCEEEEE T ss_conf 989998998489--9-99999999785989999 No 36 >d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} Probab=42.31 E-value=9.9 Score=16.15 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=25.2 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 926882689868856999999998548919998 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250) |||||-+ +.+-.++.++++++.+|.++.|+ T Consensus 1 Mki~IiD---~G~gN~~si~~~l~~lg~~~~i~ 30 (195) T d1ka9h_ 1 MKALLID---YGSGNLRSAAKALEAAGFSVAVA 30 (195) T ss_dssp CEEEEEC---SSCSCHHHHHHHHHHTTCEEEEE T ss_pred CEEEEEE---CCCCHHHHHHHHHHHCCCEEEEE T ss_conf 9899990---79749999999999879819998 No 37 >d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]} Probab=41.93 E-value=10 Score=16.11 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=59.4 Q ss_pred CEEEEECCC-CCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHC Q ss_conf 926882689-8688569999999985489199981799856503202248970588971104763272799999998750 Q gi|255764489|r 1 MRILLTNDD-GIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKM 79 (250) Q Consensus 1 m~ILitNDD-G~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l 79 (250) |||-|..|. |++-. ..|++.|++.|++|.-+-|..+.| +| .|-=+..++.. + T Consensus 3 mkI~igsDh~G~~lK--~~l~~~L~~~g~~v~D~G~~~~~~-----------------------~d-Ypd~a~~va~~-v 55 (145) T d1o1xa_ 3 VKIAIASDHAAFELK--EKVKNYLLGKGIEVEDHGTYSEES-----------------------VD-YPDYAKKVVQS-I 55 (145) T ss_dssp CEEEEEECSTTHHHH--HHHHHHHHHTTCEEEECCCCSSSC-----------------------CC-HHHHHHHHHHH-H T ss_pred CEEEEEECCHHHHHH--HHHHHHHHHCCCEEEECCCCCCCC-----------------------CC-CCHHHHHHHHH-H T ss_conf 589997287079999--999999997799999779997777-----------------------78-34899999999-7 Q ss_pred CCCCCCE--EEECCCCCCCCCHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCC-----CCCC------CHHHHHHHHHHH Q ss_conf 4645419--9971488853102333457778998898-718985322200135-----6766------147888884999 Q gi|255764489|r 80 SDKKPDL--ILSGVNVGTNTSNHVAYSGTLAAAFEGS-LQGIRSFALSQAYTY-----ENMI------PWEVSETHAPRV 145 (250) Q Consensus 80 ~~~~pDl--ViSGiN~G~N~g~~v~ySGTvgAA~ea~-~~GipsIAiS~~~~~-----~~~~------~~~~a~~~~~~i 145 (250) ...+.|+ ++.|=- +|.+|-|. +.||.+-.++-.+.. .+.. ..-.....+.++ T Consensus 56 ~~~~~~~GIliCGtG--------------~G~siaANK~~GIRAa~~~d~~~A~~ar~hNnaNvL~lGa~~~~~~~a~~i 121 (145) T d1o1xa_ 56 LSNEADFGILLCGTG--------------LGMSIAANRYRGIRAALCLFPDMARLARSHNNANILVLPGRLIGAELAFWI 121 (145) T ss_dssp HTTSCSEEEEEESSS--------------HHHHHHHTTSTTCCEEECSSHHHHHHHHHTTCCSEEEEETTTSCHHHHHHH T ss_pred HCCCCCEEEEECCCC--------------HHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCEEEEECCEECCHHHHHHH T ss_conf 348656799805875--------------899999871799755421278999999985696189775575188999999 Q ss_pred HHHHHHCCCCCC Q ss_conf 999986778667 Q gi|255764489|r 146 LRQLLKTQIPNT 157 (250) Q Consensus 146 i~~l~~~~~p~~ 157 (250) ++.+++..+..+ T Consensus 122 v~~~l~t~F~gg 133 (145) T d1o1xa_ 122 VDTFLSTPFDGG 133 (145) T ss_dssp HHHHHHCCCCCT T ss_pred HHHHHCCCCCCC T ss_conf 999977998987 No 38 >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Probab=41.41 E-value=5.7 Score=17.64 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=22.7 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 926882689868856999999998548919998 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250) ||||||=--|+=.. .|++.|.+.||+|+.+ T Consensus 2 MKIlItGasGfiG~---~l~~~L~~~g~~Vi~~ 31 (281) T d1vl0a_ 2 MKILITGANGQLGR---EIQKQLKGKNVEVIPT 31 (281) T ss_dssp EEEEEESTTSHHHH---HHHHHHTTSSEEEEEE T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCEEEEE T ss_conf 87999799988999---9999998688989992 No 39 >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=40.18 E-value=11 Score=15.95 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=44.4 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) |||||.-||-.. ...|.+.|+..|++|..+. + +.++ +..+. T Consensus 2 ~rILiVDDd~~~---~~~l~~~L~~~g~~v~~a~-~-------------------------------~~~a----~~~~~ 42 (120) T d1zgza1 2 HHIVIVEDEPVT---QARLQSYFTQEGYTVSVTA-S-------------------------------GAGL----REIMQ 42 (120) T ss_dssp CEEEEECSSHHH---HHHHHHHHHHTTCEEEEES-S-------------------------------HHHH----HHHHH T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEEC-C-------------------------------HHHH----HHHHH T ss_conf 989999099999---9999999998799999989-9-------------------------------9999----99998 Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 645419997148885310233345777899889871898532220 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250) ..+||+|+.-++...--|..++ -..-....+|-|.+|- T Consensus 43 ~~~~dliilD~~mp~~~g~~~~-------~~~~~~~~~piI~lt~ 80 (120) T d1zgza1 43 NQSVDLILLDINLPDENGLMLT-------RALRERSTVGIILVTG 80 (120) T ss_dssp HSCCSEEEEESCCSSSCHHHHH-------HHHHTTCCCEEEEEES T ss_pred HCCCCEEEEEHHHCCCHHHHHH-------HHHHCCCCCEEEEEEC T ss_conf 5499888620232362368999-------9976047984999981 No 40 >d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Probab=39.99 E-value=9.1 Score=16.36 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=35.4 Q ss_pred HHHHHHHHHCCCCEEEEC--CCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHH----HHHHHHHHHCCCCCCCEEEE Q ss_conf 999999985489199981--79985650320224897058897110476327279----99999987504645419997 Q gi|255764489|r 17 ITLENIARSISDDIWICA--PEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPV----DCVVIALQKMSDKKPDLILS 89 (250) Q Consensus 17 ~~l~~~l~~~~~~v~vvA--P~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPa----Dcv~~~l~~l~~~~pDlViS 89 (250) ..|.+.|++.|.+|.+++ |.+-|--.-.++. +.+..+|+..|--- +|+.-+|. ..+.+|||++- T Consensus 59 A~L~~tL~~~GA~V~~~~~Np~STQDdvaAaL~--------~~Gi~VfA~~g~~~eey~~~~~~~L~-~~~~~P~liiD 128 (267) T d1li4a2 59 AVLIETLVTLGAEVQWSSCNIFSTQDHAAAAIA--------KAGIPVYAWKGETDEEYLWCIEQTLY-FKDGPLNMILD 128 (267) T ss_dssp HHHHHHHHHTTCEEEEECSSTTCCCHHHHHHHH--------HTTCCEEECTTCCHHHHHHHHHTTTE-ETTEECSEEEE T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEC--------CCCCEEEEECCCCHHHHHHHHHHHHH-CCCCCCCEEEE T ss_conf 999999997468689841675523553101212--------68826787569998899999999985-33799768871 No 41 >d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]} Probab=39.29 E-value=9.2 Score=16.35 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=30.7 Q ss_pred EEEEECC---CCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEE Q ss_conf 2688268---98688569999999985489199981799856503202 Q gi|255764489|r 2 RILLTND---DGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSL 46 (250) Q Consensus 2 ~ILitND---DG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ai 46 (250) +|+|-=| ||+.|..| |+++|+.+|.+|...-|++..-|.|-+. T Consensus 26 ~I~I~gDyD~DGitS~aI--l~~~L~~~g~~~~~~Ip~R~~eGyGl~~ 71 (385) T d1ir6a_ 26 RIRVHGDYDADGLTGTAI--LVRGLAALGADVHPFIPHRLEEGYGVLM 71 (385) T ss_dssp EEEEECCSSHHHHHHHHH--HHHHHHHTTCEEEEECCCTTTSCSSCCG T ss_pred EEEEEECCCCCHHHHHHH--HHHHHHHCCCCEEEECCCCCCCCCCCCH T ss_conf 799992778606799999--9999998899759987786656998689 No 42 >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=38.13 E-value=12 Score=15.75 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=26.7 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCC Q ss_conf 92688268986885699999999854891999817998 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMD 38 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~ 38 (250) |||-|+.--| +-| ++|++.|.+.||+|.+..-+.+ T Consensus 1 Mki~vigGaG--~iG-~alA~~la~~G~~V~l~~R~~e 35 (212) T d1jaya_ 1 MRVALLGGTG--NLG-KGLALRLATLGHEIVVGSRREE 35 (212) T ss_dssp CEEEEETTTS--HHH-HHHHHHHHTTTCEEEEEESSHH T ss_pred CEEEEEECCC--HHH-HHHHHHHHHCCCEEEEEECCHH T ss_conf 9799994883--999-9999999987998999979999 No 43 >d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=37.98 E-value=12 Score=15.73 Aligned_cols=29 Identities=10% Similarity=-0.043 Sum_probs=23.2 Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEECCCCC Q ss_conf 86885699999999854891999817998 Q gi|255764489|r 10 GIKSKGLITLENIARSISDDIWICAPEMD 38 (250) Q Consensus 10 G~~a~gl~~l~~~l~~~~~~v~vvAP~~~ 38 (250) |+...-+..=++++++.|++|.++.|... T Consensus 24 G~~~~E~~~P~~~l~~aG~~V~iASp~G~ 52 (236) T d1qvwa_ 24 GVFVVEALHPFNTFRKEGFEVDFVSETGK 52 (236) T ss_dssp CBCHHHHHHHHHHHHHTTCEEEEECSSSC T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCCCC T ss_conf 33699999999999977985999889998 No 44 >d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=36.33 E-value=12 Score=15.66 Aligned_cols=80 Identities=21% Similarity=0.229 Sum_probs=47.7 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) |+|||.-||-.. .+.|.+.|+..|++|. +|... .+| +..+. T Consensus 9 ~~ILiVDD~~~~---~~~l~~~L~~~g~~v~-~a~~g-------------------------------~ea----~~~~~ 49 (133) T d2ayxa1 9 MMILVVDDHPIN---RRLLADQLGSLGYQCK-TANDG-------------------------------VDA----LNVLS 49 (133) T ss_dssp CEEEEEESSHHH---HHHHHHHHHHHTSEEE-EECCS-------------------------------HHH----HHHHH T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEE-EECCH-------------------------------HHH----HHHHH T ss_conf 889999899999---9999999997598899-97748-------------------------------778----99873 Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 645419997148885310233345777899889871898532220 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250) ..+|||||..++...=-|.+++ ..+-.....+|-|.+|. T Consensus 50 ~~~~dlillD~~mP~~dG~el~------~~ir~~~~~~pii~lt~ 88 (133) T d2ayxa1 50 KNHIDIVLSDVNMPNMDGYRLT------QRIRQLGLTLPVIGVTA 88 (133) T ss_dssp HSCCSEEEEEESSCSSCCHHHH------HHHHHHHCCSCEEEEES T ss_pred CCCCEEEEEECCCCCCCHHHHH------HHHHHHCCCCCEEEEEC T ss_conf 4574599995368999889999------99997688988899966 No 45 >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Probab=35.34 E-value=10 Score=16.09 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=23.3 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECC Q ss_conf 92688268986885699999999854891999817 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAP 35 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP 35 (250) ||||||=--|+=.. .|.+.|.+.|++|.|++- T Consensus 3 mkILVTGgtGfIGs---~lv~~L~~~g~~v~v~~~ 34 (346) T d1oc2a_ 3 KNIIVTGGAGFIGS---NFVHYVYNNHPDVHVTVL 34 (346) T ss_dssp SEEEEETTTSHHHH---HHHHHHHHHCTTCEEEEE T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCCEEEEEE T ss_conf 99999188868999---999999977997499998 No 46 >d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} Probab=34.16 E-value=13 Score=15.36 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=27.6 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 926882689868856999999998548919998179 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPE 36 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~ 36 (250) ||||+-.-.-++-||. +.+.|++.|.++.++=+. T Consensus 4 mrvli~qh~~~e~~G~--~~~~l~~~g~~~~~~~~~ 37 (230) T d1o1ya_ 4 VRVLAIRHVEIEDLGM--MEDIFREKNWSFDYLDTP 37 (230) T ss_dssp CEEEEECSSTTSSCTH--HHHHHHHTTCEEEEECGG T ss_pred EEEEEEECCCCCCCHH--HHHHHHHCCCEEEEEECC T ss_conf 0899997999989379--999999789979999789 No 47 >d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Probab=34.09 E-value=13 Score=15.35 Aligned_cols=42 Identities=7% Similarity=0.128 Sum_probs=34.3 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEE Q ss_conf 268826898688569999999985489199981799856503 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLA 43 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~ 43 (250) ||++-=-||++---+....+.+++.|++|.++.|...++-.+ T Consensus 3 kIail~~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~~v~~ 44 (170) T d1oi4a1 3 KIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKG 44 (170) T ss_dssp EEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEEC T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEE T ss_conf 899994798379999999999997899899624789944665 No 48 >d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Probab=33.50 E-value=14 Score=15.29 Aligned_cols=29 Identities=21% Similarity=0.223 Sum_probs=19.9 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 26882689868856999999998548919998 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250) ||||.-||-... +.|.+.|+..|++|..+ T Consensus 4 ~ILiVDDd~~~~---~~l~~~L~~~g~~v~~a 32 (128) T d1yioa2 4 TVFVVDDDMSVR---EGLRNLLRSAGFEVETF 32 (128) T ss_dssp EEEEECSCHHHH---HHHHHHHHTTTCEEEEE T ss_pred EEEEEECCHHHH---HHHHHHHHHCCCCCCCC T ss_conf 799998999999---99999999869971111 No 49 >d2hpra_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Bacillus subtilis [TaxId: 1423]} Probab=33.34 E-value=11 Score=15.97 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=47.0 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 3 ILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 3 ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) +-|+|..|++|---..|++.++.+..+|++..- ++..-..|+-----|.+++-+.=...++|.=++-+.-+|..++ T Consensus 5 ~~I~n~~GLHARPAa~lv~~a~~f~~~I~i~~~--~~~~dakSi~~lm~L~~~~G~~v~i~~~G~De~~A~~~l~~~l 80 (87) T d2hpra_ 5 FKVTADSGIHARPATVLVQTASKYDADVNLEYN--GKTVNLKSIMGVVSLGIAKGAEITISASGADENDALNALEETM 80 (87) T ss_dssp EEBCCTTCSCHHHHHHHHHHHTTCSSEEEEEET--TEEEETTCHHHHHTTCCCTTCEEEEEEESTTHHHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEC--CEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH T ss_conf 999379977461899999999758998999989--9998238199998559999999999997868999999999999 No 50 >d1pcha_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Mycoplasma capricolum [TaxId: 2095]} Probab=32.84 E-value=8.1 Score=16.70 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=47.8 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 2688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) .+.|+|..|+++---..|++.++.+..+|++.. .++.+-+.|+-----|.+.+-+.=...++|.=++-+.-+|..++ T Consensus 4 ~~~I~n~~GLHARPAa~lv~~a~~f~~~I~i~~--~~~~~~akSi~~lm~L~~~~G~~v~i~~~G~De~~A~~~l~~~l 80 (88) T d1pcha_ 4 SAIITDKVGLHARPASVLAKEASKFSSNITIIA--NEKQGNLKSIMNVMAMAIKTGTEITIQADGNDADQAIQAIKQTM 80 (88) T ss_dssp EEECCCTTCSCHHHHHHHHHHHTTCSSEEEEEE--TTEEEETTCHHHHHHHCCCTTCEEEEEEESTTHHHHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEE--CCEEECHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH T ss_conf 999958998646189999999976899899998--99898318299998559999999999997889999999999999 No 51 >d1ptfa_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Enterococcus faecalis [TaxId: 1351]} Probab=29.98 E-value=9.5 Score=16.25 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=44.6 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 3 ILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 3 ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) +-|+|..|+++---..|++.++++..+|++..- ++..-+.|+-----|.+++-+.=...++|.=++-+.-.|..++ T Consensus 6 ~~I~~~~GlHaRpAa~lv~~a~~~~s~i~i~~~--~~~v~akSi~~lm~L~~~~G~~i~i~~~G~de~~Al~~l~~~l 81 (87) T d1ptfa_ 6 FHIVAETGIHARPATLLVQTASKFNSDINLEYK--GKSVNLKSIMGVMSLGVGQGSDVTITVDGADEAEGMAAIVETL 81 (87) T ss_dssp EECCCTTCSCHHHHHHHHHHHTTCSSEEEEEET--TEEEETTCHHHHHHHCCCTTCEEEEEEESTTHHHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEC--CEEEECCCHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH T ss_conf 999389976463999999999868997999989--9998274899998418789999999997878999999999999 No 52 >d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Probab=28.69 E-value=16 Score=14.80 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=17.4 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 926882689868856999999998548919998 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250) ||||+| |+++..++.. |++.|+.++.. T Consensus 5 mKILv~--d~i~~~a~~~----L~~~g~~~v~~ 31 (132) T d1sc6a2 5 IKFLLV--EGVHQKALES----LRAAGYTNIEF 31 (132) T ss_dssp CCEEEC--SCCCHHHHHH----HHHTTCCCEEE T ss_pred CEEEEE--CCCCHHHHHH----HHHCCCEEEEE T ss_conf 889997--8989999999----98489999995 No 53 >d1mo1a_ d.94.1.1 (A:) Crh, catabolite repression HPr-like protein {Bacillus subtilis [TaxId: 1423]} Probab=27.88 E-value=8.3 Score=16.61 Aligned_cols=79 Identities=11% Similarity=0.147 Sum_probs=48.6 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC Q ss_conf 26882689868856999999998548919998179985650320224897058897110476327279999999875046 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD 81 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~ 81 (250) ++-|+|.-|+++-=-..|++.++.+..+|++.. .++..-+.|+----.|.+.+-+.=...++|.=+.-+.-.|..++. T Consensus 5 ~v~I~~~~GLHARpAa~lv~~a~~f~s~i~i~~--~~~~~dakSi~~lm~L~~~~G~~i~i~~~G~de~~A~~~l~~~~~ 82 (87) T d1mo1a_ 5 KVEVRLKTGLQARPAALFVQEANRFTSDVFLEK--DGKKVNAKSIMGLMSLAVSTGTEVTLIAQGEDEQEALEKLAAYVQ 82 (87) T ss_dssp EEECCSCEEECHHHHHHHHHHHTTSSSEEEEEE--TTEEEETTCHHHHHHSCCCTTCEEEEEEESTTHHHHHHHHHHHHT T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEE--CCEEECCCCHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHH T ss_conf 999889995657799999999964899899998--999983667999972478899999999978889999999999998 Q ss_pred C Q ss_conf 4 Q gi|255764489|r 82 K 82 (250) Q Consensus 82 ~ 82 (250) + T Consensus 83 ~ 83 (87) T d1mo1a_ 83 E 83 (87) T ss_dssp T T ss_pred H T ss_conf 5 No 54 >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} Probab=27.83 E-value=9.1 Score=16.37 Aligned_cols=82 Identities=12% Similarity=0.131 Sum_probs=43.9 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) |||||.-||-.. .+.+.+.|+..|+.++.+|. ++. -|+..+. T Consensus 7 ~kILiVDD~~~~---~~~l~~~L~~~g~~~v~~a~-------------------------------~~~----~al~~l~ 48 (129) T d1p6qa_ 7 IKVLIVDDQVTS---RLLLGDALQQLGFKQITAAG-------------------------------DGE----QGMKIMA 48 (129) T ss_dssp CCEEEECSSHHH---HHHHHHHHHTTTCSCEECCS-------------------------------SHH----HHHHHHH T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEEEC-------------------------------CHH----HHHHHHH T ss_conf 789999798999---99999999987994999977-------------------------------989----9999998 Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHH-HHHHHCCCCCCCCC Q ss_conf 6454199971488853102333457778998-89871898532220 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAF-EGSLQGIRSFALSQ 125 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~-ea~~~GipsIAiS~ 125 (250) ..+||+||.-+|.-.=-|.+++- .-+ ......+|-|.+|- T Consensus 49 ~~~~dlii~D~~mP~~~G~el~~-----~lr~~~~~~~~pii~lt~ 89 (129) T d1p6qa_ 49 QNPHHLVISDFNMPKMDGLGLLQ-----AVRANPATKKAAFIILTA 89 (129) T ss_dssp TSCCSEEEECSSSCSSCHHHHHH-----HHTTCTTSTTCEEEECCS T ss_pred HCCCCEEEEEEECCCCCHHHHHH-----HHHHCCCCCCCEEEEEEE T ss_conf 18987587655047997599999-----998385567982999980 No 55 >d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]} Probab=27.50 E-value=17 Score=14.67 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=17.7 Q ss_pred HHHHHHHHHHCCCCEEEECCCC Q ss_conf 9999999985489199981799 Q gi|255764489|r 16 LITLENIARSISDDIWICAPEM 37 (250) Q Consensus 16 l~~l~~~l~~~~~~v~vvAP~~ 37 (250) +..|+++|.+.||+|+++.+.. T Consensus 18 ~~~lA~~L~~rGH~Vt~~~~~~ 39 (473) T d2pq6a1 18 LFKLAKLLHLRGFHITFVNTEY 39 (473) T ss_dssp HHHHHHHHHHTTCEEEEEEEHH T ss_pred HHHHHHHHHHCCCEEEEEECCC T ss_conf 9999999997899699992764 No 56 >d2c4ka2 c.61.1.2 (A:167-350) PRPP synthetase-associated protein 1 {Human (Homo sapiens) [TaxId: 9606]} Probab=26.49 E-value=16 Score=14.80 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=10.9 Q ss_pred HHHH-HHHHHHHHHHHHHH Q ss_conf 2333-45777899889871 Q gi|255764489|r 99 NHVA-YSGTLAAAFEGSLQ 116 (250) Q Consensus 99 ~~v~-ySGTvgAA~ea~~~ 116 (250) +|++ ..||+..|.+.... T Consensus 90 DD~I~TG~T~~~a~~~Lk~ 108 (184) T d2c4ka2 90 DDIIDDVESFVAAAEILKE 108 (184) T ss_dssp CSEESSTHHHHHHHHHHHT T ss_pred CCHHCCHHHHHHHHHHHHH T ss_conf 2133145779999999974 No 57 >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} Probab=26.24 E-value=18 Score=14.53 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=48.0 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC Q ss_conf 26882689868856999999998548919998179985650320224897058897110476327279999999875046 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD 81 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~ 81 (250) ||||.-||-.. ...|.+.|+..|++|..+ .+ +.+ |+..+.. T Consensus 4 rILiVDDd~~~---~~~l~~~L~~~g~~v~~a-~~-------------------------------~~~----al~~l~~ 44 (121) T d1mvoa_ 4 KILVVDDEESI---VTLLQYNLERSGYDVITA-SD-------------------------------GEE----ALKKAET 44 (121) T ss_dssp EEEEECSCHHH---HHHHHHHHHHTTCEEEEE-SS-------------------------------HHH----HHHHHHH T ss_pred CEEEEECCHHH---HHHHHHHHHHCCCEEEEE-CC-------------------------------HHH----HHHHHHC T ss_conf 79999899999---999999999889999998-78-------------------------------899----9998743 Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 454199971488853102333457778998898718985322200 Q gi|255764489|r 82 KKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250) Q Consensus 82 ~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250) .+|||||.-++...--|.+++. .+-.....+|-|.+|.. T Consensus 45 ~~~dlillD~~mp~~~G~~~~~------~~r~~~~~~~ii~lt~~ 83 (121) T d1mvoa_ 45 EKPDLIVLDVMLPKLDGIEVCK------QLRQQKLMFPILMLTAK 83 (121) T ss_dssp HCCSEEEEESSCSSSCHHHHHH------HHHHTTCCCCEEEEECT T ss_pred CCCCEEEECCCCCCCCCCHHHH------HHHCCCCCCEEEEEEEE T ss_conf 5665897314546999823665------53105899889999813 No 58 >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Probab=26.17 E-value=13 Score=15.47 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=21.4 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 926882689868856999999998548919998 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250) ||||||=--|+=. ..|.+.|.+.|+ ++++ T Consensus 1 MKILItG~tGfiG---~~l~~~L~~~g~-~v~~ 29 (298) T d1n2sa_ 1 MNILLFGKTGQVG---WELQRSLAPVGN-LIAL 29 (298) T ss_dssp CEEEEECTTSHHH---HHHHHHTTTTSE-EEEE T ss_pred CEEEEECCCCHHH---HHHHHHHHHCCC-EEEE T ss_conf 9799989998899---999999986899-9999 No 59 >d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]} Probab=25.50 E-value=13 Score=15.47 Aligned_cols=36 Identities=22% Similarity=0.135 Sum_probs=22.5 Q ss_pred CEEEEECCCCC-----CCHHHHHHHHHHHHCCCCEEEECCCCC Q ss_conf 92688268986-----885699999999854891999817998 Q gi|255764489|r 1 MRILLTNDDGI-----KSKGLITLENIARSISDDIWICAPEMD 38 (250) Q Consensus 1 m~ILitNDDG~-----~a~gl~~l~~~l~~~~~~v~vvAP~~~ 38 (250) |||||-.-|++ ..|-|++|++..- +.+|+++..... T Consensus 1 MkILii~~~~iGD~il~~p~i~~Lk~~~P--~~~I~~l~~~~~ 41 (348) T d1pswa_ 1 MKILVIGPSWVGDMMMSQSLYRTLQARYP--QAIIDVMAPAWC 41 (348) T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHST--TCEEEEEECGGG T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHCC--CCEEEEEECHHH T ss_conf 96999858983799999999999998788--998999989508 No 60 >d1ka5a_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Staphylococcus aureus [TaxId: 1280]} Probab=24.57 E-value=20 Score=14.34 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=46.2 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 3 ILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 3 ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) +-|+|..|++|---..|++.++.+..+|++..- .+..-+.|+-----|.+.+-+.=...++|.=++-+.-+|..++ T Consensus 6 ~tI~n~~GLHARPAa~lv~~a~~f~s~I~i~~~--~~~~~akSi~~ll~L~~~~G~~v~i~~~G~de~~Al~~l~~~l 81 (88) T d1ka5a_ 6 YVIIDETGIHARPATMLVQTASKFDSDIQLEYN--GKKVNLKSIMGVMSLGVGKDAEITIYADGSDESDAIQAISDVL 81 (88) T ss_dssp EEBCCTTCSCHHHHHHHHHHHHHHSSEEEEEET--TEEEETTCHHHHHTTTCCTTCEEEEEEESSSHHHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEC--CEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH T ss_conf 999089987462999999999648998999989--9998528099998559999999999997889999999999999 No 61 >d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} Probab=23.88 E-value=20 Score=14.26 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=23.9 Q ss_pred CE-EEEECCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 92-6882689868856999999998548919998 Q gi|255764489|r 1 MR-ILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250) Q Consensus 1 m~-ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250) |+ |+|-+ |.+-.|..++++++.+|.++.++ T Consensus 4 m~~I~IiD---yg~gN~~Sv~~al~~lG~~~~ii 34 (232) T d1jvna2 4 MPVVHVID---VESGNLQSLTNAIEHLGYEVQLV 34 (232) T ss_dssp SCEEEEEC---CSCSCCHHHHHHHHHTTCEEEEE T ss_pred CCEEEEEE---CCCCHHHHHHHHHHHCCCCEEEE T ss_conf 99999997---89868999999999869976999 No 62 >d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]} Probab=23.11 E-value=21 Score=14.16 Aligned_cols=149 Identities=14% Similarity=0.202 Sum_probs=72.8 Q ss_pred CEEEEECCCCCCCHHHHH--HHHHHHHC-CCCEEEECCCCCCCCEEEEECCCCCEEE---EEEEEEEEEECC-CHHHHHH Q ss_conf 926882689868856999--99999854-8919998179985650320224897058---897110476327-2799999 Q gi|255764489|r 1 MRILLTNDDGIKSKGLIT--LENIARSI-SDDIWICAPEMDQSCLANSLTMSRNIAC---RTISKKRFAVHG-TPVDCVV 73 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~--l~~~l~~~-~~~v~vvAP~~~~S~~~~ait~~~~~~~---~~~~~~~~~v~G-tPaDcv~ 73 (250) ||||+.= |-.+.-++. |.+++++. +.++.+++--.-.+ ++..+ .+.+.. ..+. ...+| +.+..+. T Consensus 1 MKi~~v~--GtR~e~~kl~pli~~l~~~~~~~~~li~tG~H~~-~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~ 72 (376) T d1f6da_ 1 MKVLTVF--GTRPEAIKMAPLVHALAKDPFFEAKVCVTAQHRE-MLDQV--LKLFSIVPDYDLN---IMQPGQGLTEITC 72 (376) T ss_dssp CEEEEEE--CSHHHHHHHHHHHHHHHHCTTCEEEEEECCTTGG-GGHHH--HHHTTCCCSEECC---CCSSSSCHHHHHH T ss_pred CEEEEEE--EHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHH-HHHHH--HHHCCCCCCCCCC---CCCCCCCHHHHHH T ss_conf 9699999--8267399999999999738998779999088989-99999--9862878774400---4889998999999 Q ss_pred ---HHHHH-CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC---CCCHHHHHHHH---- Q ss_conf ---99875-04645419997148885310233345777899889871898532220013567---66147888884---- Q gi|255764489|r 74 ---IALQK-MSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYTYEN---MIPWEVSETHA---- 142 (250) Q Consensus 74 ---~~l~~-l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~~~~---~~~~~~a~~~~---- 142 (250) .++.. +...+||+|+- .|+. -=|+++|+-|..++||-+=+--..-..+ ..+-|.....+ T Consensus 73 ~~i~~~~~~~~~~kPD~v~v-------~GDr---~e~la~a~aa~~~~ipi~HiegG~~s~~~~~~~pde~~R~~iskls 142 (376) T d1f6da_ 73 RILEGLKPILAEFKPDVVLV-------HGDT---TTTLATSLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLA 142 (376) T ss_dssp HHHHHHHHHHHHHCCSEEEE-------ETTC---HHHHHHHHHHHTTTCCEEEESCCCCCSCTTSSTTHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHCCCCCEEE-------ECCC---CCHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCE T ss_conf 99986478897456762243-------1034---4313689998740753899852446542000474066554203200 Q ss_pred -------HHHHHHHHHCCCCCCCEEECCCCCC Q ss_conf -------9999999867786673543145678 Q gi|255764489|r 143 -------PRVLRQLLKTQIPNTTLCNINFPRC 167 (250) Q Consensus 143 -------~~ii~~l~~~~~p~~~vlNINiP~~ 167 (250) ..-.++|++.+.++..+++|--|.. T Consensus 143 ~~hf~~~~~~~~~L~~~G~~~~~I~~vG~~~~ 174 (376) T d1f6da_ 143 MYHFSPTETSRQNLLRENVADSRIFITGNTVI 174 (376) T ss_dssp SEEEESSHHHHHHHHHTTCCGGGEEECCCHHH T ss_pred EEEEECCHHHHHHHHHCCCCCCCCCEECCCHH T ss_conf 48874347888687751898653412167248 No 63 >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} Probab=22.18 E-value=18 Score=14.55 Aligned_cols=64 Identities=22% Similarity=0.404 Sum_probs=36.3 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) |||||.-||-.. ...|.+.|+..+ ...+|. -+-+| .++. ..+. T Consensus 2 irILivDD~~~~---~~~l~~~L~~~~-~~~~v~---------------------------~a~~g--~~al----~~~~ 44 (123) T d1dz3a_ 2 IKVCIADDNREL---VSLLDEYISSQP-DMEVIG---------------------------TAYNG--QDCL----QMLE 44 (123) T ss_dssp EEEEEECSCHHH---HHHHHHHHHTST-TEEEEE---------------------------EESSH--HHHH----HHHH T ss_pred CEEEEEECCHHH---HHHHHHHHHHCC-CCEEEE---------------------------EECCH--HHHH----HHHH T ss_conf 599999689999---999999998589-937999---------------------------98999--9999----9998 Q ss_pred CCCCCEEEECCCCCCCCCHHH Q ss_conf 645419997148885310233 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHV 101 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v 101 (250) ..+||+|+.-++.-.=-|.++ T Consensus 45 ~~~~dlillD~~mP~~dG~e~ 65 (123) T d1dz3a_ 45 EKRPDILLLDIIMPHLDGLAV 65 (123) T ss_dssp HHCCSEEEEESCCSSSCHHHH T ss_pred HCCCCEEEECCCCCCCCHHHH T ss_conf 569999998389999979999 No 64 >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Probab=21.35 E-value=23 Score=13.94 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=20.5 Q ss_pred CEEEE-ECCCCCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 92688-26898688569999999985489199981 Q gi|255764489|r 1 MRILL-TNDDGIKSKGLITLENIARSISDDIWICA 34 (250) Q Consensus 1 m~ILi-tNDDG~~a~gl~~l~~~l~~~~~~v~vvA 34 (250) ||||+ =|.|++. +.++++|+++|.++.|+- T Consensus 2 ~ki~iiD~g~~~~----~~i~r~l~~lg~~~~i~~ 32 (196) T d2a9va1 2 LKIYVVDNGGQWT----HREWRVLRELGVDTKIVP 32 (196) T ss_dssp CBEEEEEESCCTT----CHHHHHHHHTTCBCCEEE T ss_pred CEEEEEECCCCHH----HHHHHHHHHCCCEEEEEE T ss_conf 8899998987299----999999997898699993 No 65 >d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]} Probab=20.48 E-value=24 Score=13.83 Aligned_cols=37 Identities=5% Similarity=0.051 Sum_probs=22.5 Q ss_pred CEEEEECCC--CCCCHHHHHHHHHHHHCCCCEEEECCCC Q ss_conf 926882689--8688569999999985489199981799 Q gi|255764489|r 1 MRILLTNDD--GIKSKGLITLENIARSISDDIWICAPEM 37 (250) Q Consensus 1 m~ILitNDD--G~~a~gl~~l~~~l~~~~~~v~vvAP~~ 37 (250) |||||.+.= |-...=.+++++.+++.|+||.++-... T Consensus 3 mkilivy~S~~GnT~~la~~ia~g~~~~G~ev~~~~~~~ 41 (201) T d1ydga_ 3 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRE 41 (201) T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCC T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 579999968983899999999999986597799998556 No 66 >d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=20.25 E-value=24 Score=13.80 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=30.9 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC Q ss_conf 268826898688569999999985489199981799856 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQS 40 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S 40 (250) ||||-=-||++.--+..-.+.|+..|.+|.++.|+..+. T Consensus 3 kvlvll~~Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~~ 41 (186) T d1p5fa_ 3 RALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDP 41 (186) T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSC T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC T ss_conf 899992899789999999999997889899998269953 Done!