RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|255764489|ref|YP_003065094.2| stationary phase survival
protein SurE [Candidatus Liberibacter asiaticus str. psy62]
(250 letters)
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima
[TaxId: 2336]}
Length = 247
Score = 176 bits (446), Expect = 2e-45
Identities = 68/253 (26%), Positives = 125/253 (49%), Gaps = 10/253 (3%)
Query: 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK- 59
MRIL+TNDDGI+SKG+I L + ++++ AP+ ++S +S+T+ + + +
Sbjct: 1 MRILVTNDDGIQSKGIIVLAELLSEE-HEVFVVAPDKERSATGHSITIHVPLWMKKVFIS 59
Query: 60 ---KRFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQ 116
++ GTP DCV +A + DK+ DLI+SGVN G N + +SGT++ A EG++
Sbjct: 60 ERVVAYSTTGTPADCVKLAYNVVMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMM 119
Query: 117 GIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTV 176
I S A+S A +E + L++ + + T+ NIN P E++
Sbjct: 120 NIPSIAISSANY--ESPDFEGAARFLIDFLKEFDFSLLDPFTMLNINVP---AGEIKGWR 174
Query: 177 VTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLT 236
T Q + ++ ++ + +Y + + + D A++ +S+TPI LT
Sbjct: 175 FTRQSRRRWNDYFEERVSPFGEKYYWMMGEVIEDDDRDDVDYKAVREGYVSITPIHPFLT 234
Query: 237 DYNSQQYISLSLE 249
+ + + +
Sbjct: 235 NEQCLKKLREVYD 247
>d1l5xa_ c.106.1.1 (A:) SurE homolog PAE2908 (SurE-alpha) {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 276
Score = 167 bits (423), Expect = 1e-42
Identities = 69/256 (26%), Positives = 115/256 (44%), Gaps = 14/256 (5%)
Query: 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK- 59
M+IL+TNDDG+ S GL L A S+ D+ + APE +S +T+ + + +
Sbjct: 1 MKILVTNDDGVHSPGLRLLYQFALSLG-DVDVVAPESPKSATGLGITLHKPLRMYEVDLC 59
Query: 60 --KRFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAY-SGTLAAAFEGSLQ 116
+ A GTP D V +A +K D++LSG+N+G NTS V SGTL AAF+ +L
Sbjct: 60 GFRAIATSGTPSDTVYLATF-GLGRKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALL 118
Query: 117 GIRSFALSQAYTYEN-----MIPWEVSETHAPRVLRQLLKTQI-PNTTLCNINFPRCSPE 170
GI + A S N E+ +LK + + ++NFPR
Sbjct: 119 GIPALAYSAYLENWNELLNNKEAVEIMGAVVSSTASYVLKNGMPQGVDVISVNFPRRLGR 178
Query: 171 EVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTP 230
+ + K ++ + + +Y L G L E ++ I++TP
Sbjct: 179 G-VRAKLVKAAKLRYAQQVVERVDPRGVRYYWLY-GRDLAPEPETDVYVVLKEGGIAITP 236
Query: 231 ITTDLTDYNSQQYISL 246
+T +L ++ + + +
Sbjct: 237 LTLNLNAVDAHREVDM 252
>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 104
Score = 26.9 bits (59), Expect = 1.6
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 155 PNTTLCNINFPRCSPEEVQKTVVTA----QGKPCFSIDAKQISTNDNMSHYC 202
PN T C N P EV + T+ + P F + K I +DN S+ C
Sbjct: 34 PNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSC 85
>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member
6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 245
Score = 26.6 bits (58), Expect = 2.0
Identities = 17/99 (17%), Positives = 26/99 (26%), Gaps = 15/99 (15%)
Query: 87 ILSGVNVGTNTSNHVAYSGTLAA--------AFEGSLQGIRSFALSQAYTYENMIPWEVS 138
+ S + N YS T AA A + QGIR + + +
Sbjct: 131 MSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQ 190
Query: 139 ETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTVV 177
P R + + EE+ V
Sbjct: 191 ARGNPEEARNDFLKRQKTGRF-------ATAEEIAMLCV 222
>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus
thermophilus [TaxId: 274]}
Length = 248
Score = 26.3 bits (58), Expect = 2.3
Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 17/120 (14%)
Query: 68 PVDCVVIALQKMSDKKPDLI--LSGVNVGTNTSNHVAYSGTLAA--------AFEGSLQG 117
P+ +A ++M I ++ V + AY+ + A + +
Sbjct: 111 PMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLR 170
Query: 118 IRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTVV 177
IR A++ + ++ + P R+ + L PEEV + V+
Sbjct: 171 IRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRL-------GKPEEVAEAVL 223
>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 59
Score = 25.5 bits (56), Expect = 4.4
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 42 LANSLTMSRNIACRTISKKRFAVHGTPVDC 71
+A L +SR IA R I R V G V
Sbjct: 7 IAQQLGVSRAIAGREIRGNRVTVDGEIVRN 36
>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 274
Score = 25.0 bits (54), Expect = 7.0
Identities = 21/157 (13%), Positives = 45/157 (28%), Gaps = 14/157 (8%)
Query: 29 DIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSDKKPDLIL 88
DI + + + + + +T AV + + + +
Sbjct: 86 DILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVI--EMTQKTKEHLIKTKGEIVNVS 143
Query: 89 SGVNVGTNTSNHVAYSGTLAA--------AFEGSLQGIRSFALSQAYTYENMIPWEVSET 140
S V S + Y+ AA A + G+R ++S +
Sbjct: 144 SIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPE 203
Query: 141 HAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTVV 177
A L + ++ + + PEE+ +V
Sbjct: 204 TASDKLYSFIGSRKECIPVGHC----GKPEEIANIIV 236
>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase
{Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 251
Score = 24.6 bits (53), Expect = 7.8
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 21/87 (24%)
Query: 99 NHVAYSGTLAA--------AFEGSLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLL 150
YS + A A E + + I A++ + +M + +++ +
Sbjct: 155 GQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQ------IKKNI 208
Query: 151 KTQIPNTTLCNINFPRCSPEEVQKTVV 177
+ IP + +PEEV
Sbjct: 209 ISNIPAGRM-------GTPEEVANLAC 228
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 58
Score = 24.3 bits (53), Expect = 9.5
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 42 LANSLTMSRNIACRTISKKRFAVHGTPVD 70
+A ++ ++R+ A + I + ++G V
Sbjct: 8 IAENVGLTRSQATKAIRQSAVKINGEIVK 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.130 0.383
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 847,661
Number of extensions: 35939
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 10
Length of query: 250
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,268,006
Effective search space: 211757002
Effective search space used: 211757002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)