HHsearch alignment for GI: 255764490 and conserved domain: PRK12315
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.
Probab=99.85 E-value=4.1e-21 Score=155.47 Aligned_cols=227 Identities=16% Similarity=0.225 Sum_probs=145.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCEEEE--CCCCHHHHHHH
Q ss_conf 76343888999999999899999999999999789877722058987899999996238-9989994--30068999997
Q gi|255764490|r 42 FEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLT-EGDQMIT--AYREHGHILAC 118 (364)
Q Consensus 42 ~~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~-~~D~~~~--~yR~~~~~l~~ 118 (364)
T Consensus 10 ~dlk~l~~~~L~~la~---~iR~~~i~~v~--~~~---GH~g~~lg~~el~~alh~~f~~p~Dr~v~s~GH~sY~~~~Lt 81 (581)
T PRK12315 10 KDIKKLSLEELEQLAT---EIRTALLEKDS--AHG---GHVGPNLGVVELTIALHYVFNSPKDKIVWDVSHQSYPHKMLT 81 (581)
T ss_pred HHHHHCCHHHHHHHHH---HHHHHHHHHHH--HCC---CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHH
T ss_conf 9986299999999999---99999999974--438---867857689999999998528988874773761789999995
Q ss_pred HHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 4212-222343210123443455677321112212367667466767432543100112334444331025665430245
Q gi|255764490|r 119 GVDA-SKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQV 197 (364)
Q Consensus 119 G~~~-~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f 197 (364)
T Consensus 82 gr~~~~~~~~~~----~~l----~g~~~~~e~~~d~-~~tG~~g~gls~avGmA~A~~~~~~~~~v~~v~GDG~l~eG~~ 152 (581)
T PRK12315 82 GRKEAFLDPDHY----DDV----TGYTNPEESEHDF-FTVGHTSTSIALATGMAKARDLKGEKENIIAVIGDGSLSGGLA 152 (581)
T ss_pred CCCCCCCCCHHC----CCC----CCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHH
T ss_conf 660116861212----888----8989898888987-7877637899999999999997299984899985513440167
Q ss_pred HHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCC---------CCCCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHCCC
Q ss_conf 67654432114011102210343444443232---------14864357777763111121-000023368875421024
Q gi|255764490|r 198 YESFNIAALWNLNVIYVIENNQYAMGTSVSRA---------SAQTNFSKRGVSFNIPGMQV-DGMDIRAVKATMDKAVAY 267 (364)
Q Consensus 198 ~Ealn~A~~~~lPvifvvenN~~aist~~~~~---------~~~~~i~~ra~~~gi~~~~v-DG~D~~~v~~~~~~a~~~ 267 (364)
T Consensus 153 ~EA~~~Ag~~~~nlivi~ddN~isI~~~~~~~~~~~~~~~~~~~~~~~~~fe~~G~~~~~v~DGhd~~~i~~al~~ak~- 231 (581)
T PRK12315 153 FEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDLESLIELFKEVKD- 231 (581)
T ss_pred HHHHHHHCCCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH-
T ss_conf 9998763458985599997688023587307777778877503755010699849868825799999999999999863-
Q ss_pred CCCCCCCEEEEECCCCCCCCCC
Q ss_conf 5545465589831566887666
Q gi|255764490|r 268 CRAHKGPIIIEMLTYRYRGHSM 289 (364)
Q Consensus 268 ~r~~~gP~lie~~tyR~~gHs~ 289 (364)
T Consensus 232 ---~~~P~~I~v~T~kG~G~~~ 250 (581)
T PRK12315 232 ---IDHPIVLHIHTLKGKGYKP 250 (581)
T ss_pred ---CCCCEEEEEEECCCCCCCC
T ss_conf ---6999799999678636661