HHsearch alignment for GI: 255764490 and conserved domain: PRK12571
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.
Probab=99.62 E-value=3.3e-16 Score=124.02 Aligned_cols=226 Identities=20% Similarity=0.258 Sum_probs=140.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCHHHHHHHHHHHC-CCCCE-EEE-CCCCHHHHH
Q ss_conf 76343888999999999899999999999999789877722058--98789999999623-89989-994-300689999
Q gi|255764490|r 42 FEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLC--IGQEAVIVGMKMSL-TEGDQ-MIT-AYREHGHIL 116 (364)
Q Consensus 42 ~~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~--~GqEa~~vg~~~al-~~~D~-~~~-~yR~~~~~l 116 (364)
T Consensus 16 ~dlk~l~~~~L~~la~---~iR~l~id~v~--~~s---G--Hpg~~lG~ael~~aL~~~f~~pRDRfVlS~GH~SY~~l~ 85 (642)
T PRK12571 16 ADLRALSDAELEQLAD---EIRAEVISAVS--ETG---G--HLGSSLGVVELTVALHAVFNTPRDKLVWDVGHQCYPHKL 85 (642)
T ss_pred HHHHHCCHHHHHHHHH---HHHHHHHHHHH--HCC---C--CCCCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHH
T ss_conf 9987299999999999---99999999997--658---9--788666799999999872499988779848568899999
Q ss_pred HHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 97421-22223432101234434556773211122123676674667674325431001123344443310256654302
Q gi|255764490|r 117 ACGVD-ASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQG 195 (364)
Q Consensus 117 ~~G~~-~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG 195 (364)
T Consensus 86 LtG~~d~lk~fRq~gs~-tGhp~~~--------et~~~~~~~G~~g~gls~AvGmA~A~~l~~~d~~v~~i~GDG~LmEG 156 (642)
T PRK12571 86 LTGRRDQFRTLRQKGGL-SGFTKRS--------ESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAG 156 (642)
T ss_pred HHCCHHHHHHHHCCCCC-CCCCCCC--------CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHH
T ss_conf 86888787517606999-9978699--------88989878776535889999999999856999708999757144405
Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCC-------CCC----------H--------H--------------
Q ss_conf 456765443211401110221034344444323214-------864----------3--------5--------------
Q gi|255764490|r 196 QVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASA-------QTN----------F--------S-------------- 236 (364)
Q Consensus 196 ~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~-------~~~----------i--------~-------------- 236 (364)
T Consensus 157 vs~EA~slAGhl~~kLIvi~DDN~iSIdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (642)
T PRK12571 157 MAYEALNNAGAADRRLIVILNDNEMSIAPPVGALANYLSTLRSSDPFATLRAIAKGVEERLPGPLRDGARRARELVTGMP 236 (642)
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 89999985140368769999438744277731788999998834408999999999986064468999999998753378
Q ss_pred ---HHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf ---77777631111-210000233688754210245545465589831566887666
Q gi|255764490|r 237 ---KRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM 289 (364)
Q Consensus 237 ---~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~ 289 (364)
T Consensus 237 ~~~~~~e~~g~~~~~p~dghd~~~~~~~l~~ak~~---~~~P~~i~~~t~kg~g~~~ 290 (642)
T PRK12571 237 GGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR---ATGPVLVHVVTEKGKGYAP 290 (642)
T ss_pred CCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEEHHHHHCCCCH
T ss_conf 76506787387766787877899999999999972---5998575201476337753