HHsearch alignment for GI: 255764490 and conserved domain: cd02007
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.84 E-value=3.1e-22 Score=162.67 Aligned_cols=124 Identities=23% Similarity=0.388 Sum_probs=108.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 36766746676743254310011233444433102566543024567654432114011102210343444443232148
Q gi|255764490|r 153 FYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQ 232 (364)
Q Consensus 153 ~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~ 232 (364)
T Consensus 70 ~~~stGsLG~Gls~a~G~Ala~k~~~~~~~v~~l~GDGEl~EG~~wEA~~~A~~~~~nli~iid~N~~~i~~~~~----- 144 (195)
T cd02007 70 DAFGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG----- 144 (195)
T ss_pred CEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCC-----
T ss_conf 845886468899999999999956799984999977811401899999999765189869999679876148866-----
Q ss_pred CCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 643577777631111-210000233688754210245545465589831566887
Q gi|255764490|r 233 TNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRG 286 (364)
Q Consensus 233 ~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~g 286 (364)
T Consensus 145 -~~~~~f~afGw~~v~~vDGhd~~~i~~al~~a~----~~~~P~~Iia~TikGkG 194 (195)
T cd02007 145 -TPGNLFEELGFRYIGPVDGHNIEALIKVLKEVK----DLKGPVLLHVVTKKGKG 194 (195)
T ss_pred -CCCCHHHHCCCCEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEEECCCC
T ss_conf -642368774886778607899999999999986----28999899999641508