HHsearch alignment for GI: 255764490 and conserved domain: cd07038
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=92.13 E-value=0.073 Score=32.08 Aligned_cols=95 Identities=14% Similarity=0.178 Sum_probs=52.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCC---CCCCCCCCCCCCCHH---HHHHHHHHHHHHHHCCH
Q ss_conf 444331025665430245676544321140111022103434---444432321486435---77777631111210000
Q gi|255764490|r 180 DKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYA---MGTSVSRASAQTNFS---KRGVSFNIPGMQVDGMD 253 (364)
Q Consensus 180 ~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~a---ist~~~~~~~~~~i~---~ra~~~gi~~~~vDG~D 253 (364)
T Consensus 60 ~gv~~~t~GPG~tN---~~tgl~~A~~d~~Pvl~isG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~~~~v--~~ 134 (162)
T cd07038 60 LGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARL--TD 134 (162)
T ss_pred CEEEEECCCCCHHH---HHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEEE--CC
T ss_conf 65666557871888---99999999983898799968877556525763001126521699999998673288992--99
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf 23368875421024554546558983
Q gi|255764490|r 254 IRAVKATMDKAVAYCRAHKGPIIIEM 279 (364)
Q Consensus 254 ~~~v~~~~~~a~~~~r~~~gP~lie~ 279 (364)
T Consensus 135 ~~~~~~~l~~A~~~A~~~~gPV~l~i 160 (162)
T cd07038 135 PENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 99999999999999842898889963