RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764490|ref|YP_003065085.2| dehydrogenase, E1 component
[Candidatus Liberibacter asiaticus str. psy62]
(364 letters)
>gnl|CDD|163176 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc.
Length = 315
Score = 542 bits (1399), Expect = e-155
Identities = 196/315 (62%), Positives = 237/315 (75%), Gaps = 1/315 (0%)
Query: 49 KEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITA 108
KE+ L YR MLLIRRFEEKAGQLYGMG +GGFCHL IGQEAV VG+ +L D +IT+
Sbjct: 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITS 60
Query: 109 YREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGT 168
YR+HGH LA GV ++MAELTGR G SKGKGGSMHMF + FYGGHGIVGAQV L T
Sbjct: 61 YRDHGHALARGVPPKEVMAELTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLAT 120
Query: 169 GIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSR 228
G+AFANKYR +D + FGDGAANQGQ YESFN+AALW L VI+VIENN YAMGTSV R
Sbjct: 121 GLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTSVER 180
Query: 229 ASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHS 288
+S+ T+ KRG SF IPG +VDGMD+ AV+ +AV R+ KGPI++EM TYR+RGHS
Sbjct: 181 SSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240
Query: 289 MSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQ 348
MSDPA YR++EE+ E R DPIE+++ RL+ ASE +LKEI+ VR + +VEFA+
Sbjct: 241 MSDPAKYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAE 299
Query: 349 SDKEPDPAELYSDIL 363
+ EP ELY+D+
Sbjct: 300 NSPEPPVEELYTDVY 314
>gnl|CDD|177910 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit
alpha.
Length = 362
Score = 383 bits (986), Expect = e-107
Identities = 158/318 (49%), Positives = 219/318 (68%), Gaps = 4/318 (1%)
Query: 46 EFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQM 105
E +K++ + +R M L+RR E A LY ++ GFCHL GQEAV VGM+ ++T+ D +
Sbjct: 26 ETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAI 85
Query: 106 ITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVS 165
ITAYR+H L G ++ AEL GR+ G S+GKGGSMH + FYGGHGIVGAQV
Sbjct: 86 ITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVP 145
Query: 166 LGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTS 225
LG G+AFA KY + + + +GDGAANQGQ++E+ NIAALW+L VI+V ENN Y MGT+
Sbjct: 146 LGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYGMGTA 205
Query: 226 VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYR 285
RA+ + KRG +PG++VDGMD+ AVK A + + GPI++EM TYRY
Sbjct: 206 EWRAAKSPAYYKRGDY--VPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYH 262
Query: 286 GHSMSDP-ANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSV 344
GHSMSDP + YRTR+EI+ +R DPIE+VRK LL ++ A+E +LK+IE +RK ++++V
Sbjct: 263 GHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAV 322
Query: 345 EFAQSDKEPDPAELYSDI 362
A+ PDP+EL++++
Sbjct: 323 AKAKESPMPDPSELFTNV 340
>gnl|CDD|178002 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring).
Length = 433
Score = 273 bits (700), Expect = 4e-74
Identities = 125/322 (38%), Positives = 192/322 (59%), Gaps = 8/322 (2%)
Query: 49 KEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITA 108
+E+ L Y M+L R FE+ Q+Y G + GF HL GQEAV G L + D +++
Sbjct: 85 REEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVST 144
Query: 109 YREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGT 168
YR+H H L+ GV A +M+EL G+ G +G+GGSMHMFS ++ GG +G + + T
Sbjct: 145 YRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVAT 204
Query: 169 GIAFANKYRRS-------DKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYA 221
G AF++KYRR D + + FGDG N GQ +E N+AALW L +++V+ENN +A
Sbjct: 205 GAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA 264
Query: 222 MGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281
+G S RA++ K+G +F +PG+ VDGMD+ V+ +A+ R +GP ++E T
Sbjct: 265 IGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 324
Query: 282 YRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIIN 341
YR+RGHS++DP R E + DPI ++K L+ N A+E +LK IE + +++
Sbjct: 325 YRFRGHSLADPDELRDPAEKAHYAA-RDPIAALKKYLIENGLATEAELKAIEKKIDEVVE 383
Query: 342 NSVEFAQSDKEPDPAELYSDIL 363
++VEFA + P ++L ++
Sbjct: 384 DAVEFADASPLPPRSQLLENVF 405
>gnl|CDD|132225 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc.
Length = 341
Score = 244 bits (625), Expect = 3e-65
Identities = 99/313 (31%), Positives = 163/313 (52%), Gaps = 12/313 (3%)
Query: 48 NKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMIT 107
+ E+ + YR M+L RRF+ KA L G +G + +GQEA VG ++L + D +
Sbjct: 22 SDEELVELYRDMVLTRRFDTKALALQRQGRLGTYA-PNLGQEAAQVGSALALRKDDWVFP 80
Query: 108 AYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLG 167
+YR+H +LA GV +I+ G + G +G ++ + +G Q
Sbjct: 81 SYRDHAAMLARGVPLVEILLYWRGDERGSWDPEGVNILPPNI---------PIGTQYLHA 131
Query: 168 TGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVS 227
G+A+A K R D + V FGDG ++G YE+ N A ++ V++ ++NNQ+A+ S
Sbjct: 132 AGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRS 191
Query: 228 RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGH 287
+ +A +++ +++ IPG+QVDG D+ AV A +AV R+ GP +IE +TYR H
Sbjct: 192 KQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPH 251
Query: 288 SMSD-PANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEF 346
+ +D P YRT+EE E R DPI ++RK L E + +E + +V
Sbjct: 252 TTADDPTRYRTKEEEEEWRK-KDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAE 310
Query: 347 AQSDKEPDPAELY 359
A + P +++
Sbjct: 311 ALALPPPPVDDIF 323
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component.
The E1 ortholog from Corynebacterium glutamicum is
unusual in having an N-terminal extension that resembles
the dihydrolipoamide succinyltransferase (E2) component
of 2-oxoglutarate dehydrogenase.
Length = 929
Score = 59.9 bits (145), Expect = 1e-09
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 4/173 (2%)
Query: 188 GDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTSVSRASAQTNFSKRGVSFN 243
GD A A QG V E+ N++ L +V I++I NNQ T+ A + S
Sbjct: 351 GDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQ 410
Query: 244 IPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINE 303
P V+ D AV AV Y K + I+++ YR GH+ +D + +
Sbjct: 411 APIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQK 470
Query: 304 MRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPA 356
++ + P + +L+ A+E D+ E+ R + + S +E + A
Sbjct: 471 IKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNTA 523
>gnl|CDD|183391 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 52.6 bits (127), Expect = 2e-07
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 26/142 (18%)
Query: 188 GDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTS--VSRASA-QTNFSKRGV 240
GD A A QG V E+ N++ L I+++ NNQ T+ SR+S T+ +K
Sbjct: 655 GDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAK--- 711
Query: 241 SFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGH------SMSDPAN 294
P V+G D AV A Y + ++I+++ YR RGH SM+ P
Sbjct: 712 MIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLM 771
Query: 295 YRTREEINEMRSNHDPIEQVRK 316
Y I+ RS VRK
Sbjct: 772 YDL---IDAKRS-------VRK 783
Score = 27.6 bits (62), Expect = 5.0
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 104 QMITAYREHGHILA 117
++I AYR GH++A
Sbjct: 391 ELIHAYRVRGHLMA 404
Score = 27.2 bits (61), Expect = 6.9
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 276 IIEML-TYRYRGHSMSD--PANYRTR 298
++E++ YR RGH M+D P YR R
Sbjct: 389 VMELIHAYRVRGHLMADTDPLEYRQR 414
>gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 641
Score = 46.2 bits (109), Expect = 1e-05
Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 42/196 (21%)
Query: 136 ISKGKGGSMHMFSTKNGFYG------------GHGIVGAQVSLGTGIAFANKYRRSDKIC 183
I G+ G M NG G G G +S G G+A + +
Sbjct: 143 ILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSV 202
Query: 184 VVCFGDGAANQGQVYESFNIAALWNLNVIYVI-ENNQYAMGTS----------------- 225
V GDGA GQ YE+ N A + N+I ++ +N Q ++ T+
Sbjct: 203 VSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALS 262
Query: 226 -------VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIE 278
+ R ++ T F + G + P VDG +I + + ++ + GP++I
Sbjct: 263 RLQSNCGMIRETSSTLFEELGFHYVGP---VDGHNIDDLVSILETLKS--TKTIGPVLIH 317
Query: 279 MLTYRYRGHSMSDPAN 294
++T + RG+ ++ A+
Sbjct: 318 VVTEKGRGYPYAERAD 333
>gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 677
Score = 39.9 bits (93), Expect = 0.001
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 12/96 (12%)
Query: 136 ISKGKGGSMHMFSTKNGFYG------------GHGIVGAQVSLGTGIAFANKYRRSDKIC 183
I G+ MH NG G G G +S G G+A +
Sbjct: 110 ILTGRRDKMHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNV 169
Query: 184 VVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ 219
V GDGA GQ YE+ N A + ++I ++ +N+
Sbjct: 170 VAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 205
>gnl|CDD|181824 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component;
Reviewed.
Length = 924
Score = 40.1 bits (95), Expect = 0.001
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 24/182 (13%)
Query: 188 GDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTSVSRA-SAQ--TNFSKRGV 240
GD A A QG V E+ N++ L I+++ NNQ TS S T+ +K
Sbjct: 350 GDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAK--- 406
Query: 241 SFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSD------PAN 294
P V+G D AV A+ Y + K ++I+++ YR GH+ D P
Sbjct: 407 MVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLM 466
Query: 295 YRTREEINEMRSNHDPIEQV-RKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEP 353
Y+ +I H ++ +L+ +E + E+ R ++ E + +
Sbjct: 467 YK---KI----KKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPA 519
Query: 354 DP 355
D
Sbjct: 520 DW 521
Score = 28.9 bits (66), Expect = 2.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 103 DQMITAYREHGHILAC 118
Q+I AYR GH+ A
Sbjct: 84 LQLINAYRFRGHLAAN 99
>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 641
Score = 38.9 bits (91), Expect = 0.002
Identities = 46/216 (21%), Positives = 81/216 (37%), Gaps = 61/216 (28%)
Query: 129 LTGRQGGISKGK-GGSMHMF-----STKNGFYGGHGIVGAQVSLGT--GIAFANKYRRSD 180
LTGR+ + G + F S + F H + S+ G A A + D
Sbjct: 86 LTGRRDRFRTLRQKGGLSGFTKRSESEYDPFGAAH----SSTSISAALGFAKARALGQPD 141
Query: 181 KICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQY-------AMGTSVSRASAQT 233
V GDG+ G YE+ N A + +I ++ +N+ A+ +S +
Sbjct: 142 GDVVAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSD 201
Query: 234 NFSK-----RGVSFNIP---------------GMQ----------------VDGMDIRAV 257
F++ +GV +P GM +DG D+ A+
Sbjct: 202 PFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEAL 261
Query: 258 KATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPA 293
+ + A A GP+++ ++T + RG++ PA
Sbjct: 262 LSVLRAARA---RADGPVLVHVVTEKGRGYA---PA 291
>gnl|CDD|180086 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 580
Score = 38.9 bits (92), Expect = 0.002
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 42/180 (23%)
Query: 124 KIMAELTGRQGGIS--KGKGG---------SMH-MFSTKNGFYGGHGIVGAQVSLGTGIA 171
KI LTGR+ + KGG S + F GH +S G+A
Sbjct: 82 KI---LTGRRDRFDTLRQKGGLSGFPKRSESEYDTFGA------GH--SSTSISAALGMA 130
Query: 172 FANKYRRSDK---ICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQY-------A 221
A + + + V+ GDGA G +E+ N A ++I ++ +N+ A
Sbjct: 131 KARDLKGGEDRKVVAVI--GDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGA 188
Query: 222 MGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281
+ ++R + T F + G ++ P +DG D+ A+ T+ A + KGP+++ ++T
Sbjct: 189 LSNYLARLRSSTLFEELGFNYIGP---IDGHDLDALIETLKNA----KDLKGPVLLHVVT 241
>gnl|CDD|181051 PRK07586, PRK07586, hypothetical protein; Validated.
Length = 514
Score = 37.9 bits (89), Expect = 0.004
Identities = 41/148 (27%), Positives = 57/148 (38%), Gaps = 44/148 (29%)
Query: 158 GIVGAQVSLGTGIAFANKYRRSDKICVVCF-GDGAANQGQVYESFNIAALW-----NLNV 211
G +G + L TG A A R+ V+ GDG+A +Y I ALW NL+V
Sbjct: 385 GAIGQGLPLATGAAVACPDRK-----VLALQGDGSA----MY---TIQALWTQARENLDV 432
Query: 212 IYVIENN-QYA--------MGTSVS--RASAQTNFSKRGVSFNIPGM----QVDGMDIRA 256
VI N YA +G RA + P + +GM + A
Sbjct: 433 TTVIFANRAYAILRGELARVGAGNPGPRALDMLDLDD-------PDLDWVALAEGMGVPA 485
Query: 257 VKAT----MDKAVAYCRAHKGPIIIEML 280
+ T A+A A GP +IE +
Sbjct: 486 RRVTTAEEFADALAAALAEPGPHLIEAV 513
>gnl|CDD|161779 TIGR00232, tktlase_bact, transketolase, bacterial and yeast. This
model is designed to capture orthologs of bacterial
transketolases. The group includes two from the yeast
Saccharomyces cerevisiae but excludes dihydroxyactetone
synthases (formaldehyde transketolases) from various
yeasts and the even more distant mammalian
transketolases. Among the family of thiamine
diphosphate-dependent enzymes that includes
transketolases, dihydroxyacetone synthases, pyruvate
dehydrogenase E1-beta subunits, and
deoxyxylulose-5-phosphate synthases, mammalian and
bacterial transketolases seem not to be orthologous.
Length = 653
Score = 37.4 bits (87), Expect = 0.006
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 19/137 (13%)
Query: 156 GHGIVGAQVSLGTGIA---FANKYRR-----SDKICVVCFGDGAANQGQVYESFNIAALW 207
G GI A +G IA A + + D V GDG +G YE ++A
Sbjct: 113 GQGIANA---VGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHL 169
Query: 208 NLNVIYVI-ENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQV-DGMDIRAVKATMDKAV 265
L + V+ ++N+ ++ +V + + + +KR ++ ++V DG D+ A+ A +++A
Sbjct: 170 KLGKLIVLYDSNRISIDGAVDGSFTE-DVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEA- 227
Query: 266 AYCRAHKG-PIIIEMLT 281
+A K P +IE+ T
Sbjct: 228 ---KASKDKPTLIEVTT 241
>gnl|CDD|180309 PRK05899, PRK05899, transketolase; Reviewed.
Length = 624
Score = 35.1 bits (82), Expect = 0.025
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 18/130 (13%)
Query: 164 VSLGTGIAFANKYRRSD-----------KICVVCFGDGAANQGQVYESFNIAALWNL-NV 211
++ G+A A KY + V+C GDG +G +E+ ++A L N+
Sbjct: 124 LANAVGMALAEKYLAALFNRPGLDIVDHYTYVLC-GDGDLMEGISHEACSLAGHLKLGNL 182
Query: 212 IYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAH 271
I + ++N+ ++ + + KR ++ ++VDG D+ A+ D A+ +A
Sbjct: 183 IVIYDDNRISIDGPTEGWFTE-DVKKRFEAYGWHVIEVDGHDVEAI----DAAIEEAKAS 237
Query: 272 KGPIIIEMLT 281
P +I T
Sbjct: 238 TKPTLIIAKT 247
>gnl|CDD|183347 PRK11866, PRK11866, 2-oxoacid ferredoxin oxidoreductase subunit
beta; Provisional.
Length = 279
Score = 35.1 bits (81), Expect = 0.026
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 154 YGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIY 213
YG HGI G + + TG+ +AN K+ V+ +G G AA N+++ Y
Sbjct: 55 YGIHGIHGRVLPIATGVKWANP-----KLTVIGYGGDGDGYGIGLGHLPHAARRNVDITY 109
Query: 214 VIENNQYAMGTSVSRASAQT 233
++ NNQ G + +AS T
Sbjct: 110 IVSNNQ-VYGLTTGQASPTT 128
>gnl|CDD|183431 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 581
Score = 34.2 bits (79), Expect = 0.057
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 164 VSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ 219
++L TG+A A + + GDG+ + G E N AA N+I ++ +NQ
Sbjct: 119 IALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQ 174
>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase. DXP
synthase is a thiamine diphosphate-dependent enzyme
related to transketolase and the pyruvate dehydrogenase
E1-beta subunit. By an acyloin condensation of pyruvate
with glyceraldehyde 3-phosphate, it produces
1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine
diphosphate (TPP), pyridoxal phosphate, and the
isoprenoid building block isopentenyl diphosphate (IPP).
Length = 617
Score = 34.0 bits (78), Expect = 0.065
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 129 LTGRQGGIS--KGKGGSMHMF-----STKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDK 181
LTGR+ S + K G +H F S + F GH +S G GIA A + + +D+
Sbjct: 78 LTGRREKFSTLRQKKG-LHGFPKRSESEYDVFSAGHS--STSISAGLGIAVAAEKKGADR 134
Query: 182 ICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSV 226
V GDGA G +E+ N A ++I ++ +N+ ++ +V
Sbjct: 135 KTVCVIGDGAITAGMAFEALNHAGDLKTDMIVILNDNEMSISENV 179
>gnl|CDD|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 701
Score = 32.8 bits (74), Expect = 0.14
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 114 HILACGVDASKIMAELTGRQGGI-SKGKGGSM----HMFSTKNGFYGGHGIVGAQVSLGT 168
+IL V+ + LT R I S+ K G + S + F GHG LG
Sbjct: 142 NILWDAVEQTYAHKVLTRRWSAIPSRQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGL 201
Query: 169 GIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSR 228
+A K +R + V+ + GQ YE+ + A + N+I ++ ++++++ ++
Sbjct: 202 AVARDIKGKRDRVVAVI--DNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEE 259
Query: 229 AS 230
S
Sbjct: 260 GS 261
>gnl|CDD|183345 PRK11864, PRK11864, 2-ketoisovalerate ferredoxin oxidoreductase
subunit beta; Provisional.
Length = 300
Score = 31.6 bits (72), Expect = 0.34
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCF-GDGA-ANQGQVYESFNIAALWNLNVIYV 214
H A ++ +GI A K R + VV + GDG A+ G +++ + AA N +++Y+
Sbjct: 68 HTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIG--FQALSGAAERNHDILYI 125
Query: 215 IENNQYAMGTSVSRAS 230
+ +N+ M T + R+S
Sbjct: 126 MYDNEAYMNTGIQRSS 141
>gnl|CDD|180253 PRK05778, PRK05778, 2-oxoglutarate ferredoxin oxidoreductase
subunit beta; Validated.
Length = 301
Score = 31.0 bits (71), Expect = 0.54
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 16/76 (21%)
Query: 153 FYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDG-----AANQGQVYESFNIAALW 207
+G H + G ++ TG AN D +V GDG F A
Sbjct: 65 SHGLHTLHGRAIAFATGAKLANP----DLEVIVVGGDGDLASIGGGH------FIHAGRR 114
Query: 208 NLNVIYVIENNQ-YAM 222
N+++ ++ENN Y +
Sbjct: 115 NIDITVIVENNGIYGL 130
>gnl|CDD|183348 PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase
subunit beta; Reviewed.
Length = 286
Score = 30.6 bits (70), Expect = 0.61
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 22/79 (27%)
Query: 153 FYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCF-GDGAANQGQVYESFNI-------A 204
YG H I G +++ TG+ AN + V+ GDG A I A
Sbjct: 64 TYGFHTIHGRALAIATGLKLANP-----DLTVIVVTGDGDA--------LAIGGNHFIHA 110
Query: 205 ALWNLNVIYVIENNQ-YAM 222
N+++ Y++ NNQ Y +
Sbjct: 111 LRRNIDITYILFNNQIYGL 129
>gnl|CDD|163396 TIGR03684, arCOG00985, arCOG04150 universal archaeal PUA-domain
protein. This universal archaeal protein contains a
domain possibly associated with RNA binding (pfam01472,
TIGR00451).
Length = 150
Score = 29.9 bits (68), Expect = 1.0
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 92 IVGMKMSLTEGDQMITAYREHGHILACGV---DASKIMAELTGR 132
IV S+ EGD + H LA G+ DA ++ E G+
Sbjct: 93 IVSADPSIKEGDIVFVVDETHRKPLAVGIALMDAEEMEEEKKGK 136
>gnl|CDD|180430 PRK06154, PRK06154, hypothetical protein; Provisional.
Length = 565
Score = 29.4 bits (66), Expect = 1.6
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 163 QVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAM 222
Q+ G G+A K R D + + +GD A G F A + ++ ++ NN ++M
Sbjct: 432 QLGYGLGLAMGAKLARPDALVINLWGDAAF--GMTGMDFETAVRERIPILTILLNN-FSM 488
Query: 223 G 223
G
Sbjct: 489 G 489
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 29.3 bits (65), Expect = 1.8
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 196 QVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIR 255
++ ++ +I + ++LN+ + ENN+Y M + + F + + +I M D +IR
Sbjct: 139 EIRQAIHIESFFSLNLAFQHENNKYEMESHAKHGAKMVTFIPK--NGHICKMVYD-KNIR 195
Query: 256 AVKATMDKAV 265
KA + V
Sbjct: 196 IFKALGNDTV 205
>gnl|CDD|184408 PRK13937, PRK13937, phosphoheptose isomerase; Provisional.
Length = 188
Score = 29.1 bits (66), Expect = 2.0
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 102 GDQMITAYREHGHILACG-----VDASKIMAELTGR 132
+ +I A G IL CG DA I AEL GR
Sbjct: 28 AEALIEALANGGKILLCGNGGSAADAQHIAAELVGR 63
>gnl|CDD|181391 PRK08327, PRK08327, acetolactate synthase catalytic subunit;
Validated.
Length = 569
Score = 28.8 bits (65), Expect = 2.1
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 145 HMFSTKNGFYGGHGIVGAQVSLG--TGIAFANKYRRSDKICVVCFGDGAANQGQVYESFN 202
K G Y G G G LG G A K D++ + GDG+ G +
Sbjct: 414 QARLNKPGSYFGDGSAG---GLGWALGAALGAKLATPDRLVIATVGDGSFIFGVPEAAHW 470
Query: 203 IAALWNLNVIYVIENNQ 219
+A + L V+ V+ NN
Sbjct: 471 VAERYGLPVLVVVFNNG 487
>gnl|CDD|180294 PRK05858, PRK05858, hypothetical protein; Provisional.
Length = 542
Score = 28.5 bits (64), Expect = 2.7
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 166 LGTGI--AFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN 218
LGTG A A + R + V+ GDGA G + NL V+ VI NN
Sbjct: 409 LGTGPGYALAARLARPSRQVVLLQGDGAF--GFSLMDVDTLVRHNLPVVSVIGNN 461
>gnl|CDD|166510 PLN02869, PLN02869, fatty aldehyde decarbonylase.
Length = 620
Score = 28.3 bits (63), Expect = 3.0
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 317 RLLHNK-WASEGDLKEIEMNVRKIINNSVEFAQSDKE 352
R+LHN+ W S + + N +I++ +EF Q D+E
Sbjct: 57 RMLHNQLWISLSRYRTAKGN-NRIVDKGIEFEQVDRE 92
>gnl|CDD|162533 TIGR01781, Trep_dent_lipo, Treponema denticola clustered
lipoprotein. This model represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 412
Score = 28.4 bits (63), Expect = 3.1
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 253 DIRAVKATMDKAVAYCR----AHKGPIIIEMLTYR-YRGHSMSDPANYRTREEINEMRSN 307
++ +K DK YC+ A G + + Y Y+ Y +E+N +
Sbjct: 121 NVEVIKVERDKEFIYCKQKRTAKNGKDLFYSIKYEWYKRAKKFVNTKYELEQELNIGVID 180
Query: 308 HDPIEQ 313
I++
Sbjct: 181 EKIIKE 186
>gnl|CDD|139997 PRK13938, PRK13938, phosphoheptose isomerase; Provisional.
Length = 196
Score = 28.2 bits (62), Expect = 3.3
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 102 GDQMITAYREHGHILACG-----VDASKIMAELTG 131
GD++I YR + CG DA AELTG
Sbjct: 35 GDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTG 69
>gnl|CDD|118088 pfam09552, RE_BstXI, BstXI restriction endonuclease. This family
includes the BstXI (recognizes and cleaves
CCANNNNN^NTGG) restriction endonuclease.
Length = 287
Score = 28.0 bits (62), Expect = 3.7
Identities = 33/152 (21%), Positives = 50/152 (32%), Gaps = 14/152 (9%)
Query: 181 KICVVCFGDGAA---NQGQVYESFNIAALWNLNVIYVIENNQYAM---GTSVSRASAQTN 234
+ V G A Q +E + W + + + G V R S TN
Sbjct: 73 QPSFVKLGVNAFILYRQRSQFEEYPPLPDWEVRGLKKTGPIVRSKDVGGHYVLRLSGTTN 132
Query: 235 FSKRGVSFNIPGMQVDGMDIR----AVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMS 290
+R + + G IR A T++KA ++ II + + G S
Sbjct: 133 EKERKIRVGFNETEGPGAGIRAPEYANAETLEKARLQLESYYWLIIKSLNSAIDWGMSPK 192
Query: 291 DPANYRTREEINEMRSNHDPIEQVRKRLLHNK 322
D A R E NE + I LL +
Sbjct: 193 D-ARKRRDEPYNEAQFQGLLINI---SLLEER 220
>gnl|CDD|162747 TIGR02177, PorB_KorB, 2-oxoacid:acceptor oxidoreductase, beta
subunit, pyruvate/2-ketoisovalerate family. Several
related four-subunit enzymes may exist in the same
species. This model describes a subfamily of beta
subunits, representing mostly pyruvate and
2-ketoisovalerate specific enzymes.
Length = 287
Score = 28.2 bits (63), Expect = 3.8
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 134 GGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAAN 193
GI G + NGF HG+ G + + TGI AN +V GDG
Sbjct: 34 SGI--GCSAKTPHYVNVNGF---HGLHGRALPVATGIKLANP----HLKVIVVGGDGDL- 83
Query: 194 QGQVYESFNIAALWNLNVIYVIENNQ 219
G F A N+++ ++ +NQ
Sbjct: 84 YGIGGNHFVAAGRRNVDITVIVHDNQ 109
>gnl|CDD|150392 pfam09710, Trep_dent_lipo, Treponema clustered lipoprotein
(Trep_dent_lipo). This entry represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighbouring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 394
Score = 27.6 bits (61), Expect = 5.3
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 253 DIRAVKATMDKAVAYCR----AHKGPIIIEMLTYR-YRGHSMSDPANYRTREEINEMRSN 307
++ +K D YC+ G + +TY+ Y M P +Y E+N N
Sbjct: 108 NLEFIKVKKDGEFIYCKQKAPTQNGKDLDYQVTYKWYNIEKMFLPTSYELLSELNIGVIN 167
Query: 308 HDPIEQ 313
+ IE
Sbjct: 168 EELIEN 173
>gnl|CDD|132613 TIGR03574, selen_PSTK, L-seryl-tRNA(Sec) kinase, archaeal. Members
of this protein are L-seryl-tRNA(Sec) kinase. This
enzyme is part of a two-step pathway in Eukaryota and
Archaea for performing selenocysteine biosynthesis by
changing serine misacylated on selenocysteine-tRNA to
selenocysteine. This enzyme performs the first step,
phosphorylation of the OH group of the serine side
chain. This family represents archaeal proteins with
this activity.
Length = 249
Score = 27.5 bits (61), Expect = 5.7
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 299 EEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKE 352
EEI E+ N IE+ +K + E L +I+ R+I+ ++ + DKE
Sbjct: 161 EEILEISENKLKIEKPKKP---KRRTDENILNKIDKRTRQIVGELIKTGKLDKE 211
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.134 0.391
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,856,174
Number of extensions: 374169
Number of successful extensions: 777
Number of sequences better than 10.0: 1
Number of HSP's gapped: 764
Number of HSP's successfully gapped: 47
Length of query: 364
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 269
Effective length of database: 3,941,713
Effective search space: 1060320797
Effective search space used: 1060320797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)