BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764490|ref|YP_003065085.2| dehydrogenase, E1 component [Candidatus Liberibacter asiaticus str. psy62] (364 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764490|ref|YP_003065085.2| dehydrogenase, E1 component [Candidatus Liberibacter asiaticus str. psy62] Length = 364 Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/364 (100%), Positives = 364/364 (100%) Query: 1 MYVAKQDVTVGDIKMALNPSVSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLML 60 MYVAKQDVTVGDIKMALNPSVSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLML Sbjct: 1 MYVAKQDVTVGDIKMALNPSVSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLML 60 Query: 61 LIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGV 120 LIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGV Sbjct: 61 LIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGV 120 Query: 121 DASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSD 180 DASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSD Sbjct: 121 DASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSD 180 Query: 181 KICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGV 240 KICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGV Sbjct: 181 KICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGV 240 Query: 241 SFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREE 300 SFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREE Sbjct: 241 SFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREE 300 Query: 301 INEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYS 360 INEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYS Sbjct: 301 INEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYS 360 Query: 361 DILI 364 DILI Sbjct: 361 DILI 364 >gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 957 Score = 60.5 bits (145), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 6/177 (3%) Query: 178 RSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTSVSRASAQT 233 RS + ++ GD A A QG V E+F ++ L V I++I NNQ T+ S A + T Sbjct: 367 RSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCT 426 Query: 234 NFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPA 293 S S IP V+G D AV + AV++ ++I+++ YR GH+ D Sbjct: 427 YASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEP 486 Query: 294 NYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSD 350 ++ +RS+ ++ L+ N+ S+ +L+ + N K + E+ +S+ Sbjct: 487 SFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLE--AEYKESE 541 >gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 Score = 26.9 bits (58), Expect = 0.58, Method: Compositional matrix adjust. Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Query: 98 SLTEGDQMITAYREHGH-ILACGVDASKIMAELT 130 ++TE ++ ITAY E GH ++AC V + + + T Sbjct: 398 AMTEEEKKITAYHEAGHAVVACHVPKADPLHKAT 431 >gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 25.0 bits (53), Expect = 2.1, Method: Compositional matrix adjust. Identities = 9/30 (30%), Positives = 17/30 (56%) Query: 185 VCFGDGAANQGQVYESFNIAALWNLNVIYV 214 VC GD +QG+ ++ NL+++Y+ Sbjct: 43 VCLGDFVVHQGKNSDNLGQVIRINLDIVYI 72 >gi|254781214|ref|YP_003065627.1| hypothetical protein CLIBASIA_05605 [Candidatus Liberibacter asiaticus str. psy62] Length = 110 Score = 23.5 bits (49), Expect = 6.5, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%) Query: 39 LEGFEVSEFNKEQELSAY---RLMLLIRRF 65 LEG E++E +++ L AY R+ + RRF Sbjct: 69 LEGDELAEVRRQESLRAYEMNRIPIPARRF 98 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.134 0.391 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 224,456 Number of Sequences: 1233 Number of extensions: 9161 Number of successful extensions: 24 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 10 length of query: 364 length of database: 328,796 effective HSP length: 75 effective length of query: 289 effective length of database: 236,321 effective search space: 68296769 effective search space used: 68296769 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)