BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764490|ref|YP_003065085.2| dehydrogenase, E1 component
[Candidatus Liberibacter asiaticus str. psy62]
         (364 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764490|ref|YP_003065085.2| dehydrogenase, E1 component [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 364

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/364 (100%), Positives = 364/364 (100%)

Query: 1   MYVAKQDVTVGDIKMALNPSVSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLML 60
           MYVAKQDVTVGDIKMALNPSVSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLML
Sbjct: 1   MYVAKQDVTVGDIKMALNPSVSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLML 60

Query: 61  LIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGV 120
           LIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGV
Sbjct: 61  LIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGV 120

Query: 121 DASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSD 180
           DASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSD
Sbjct: 121 DASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSD 180

Query: 181 KICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGV 240
           KICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGV
Sbjct: 181 KICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGV 240

Query: 241 SFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREE 300
           SFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREE
Sbjct: 241 SFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREE 300

Query: 301 INEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYS 360
           INEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYS
Sbjct: 301 INEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYS 360

Query: 361 DILI 364
           DILI
Sbjct: 361 DILI 364


>gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 957

 Score = 60.5 bits (145), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 6/177 (3%)

Query: 178 RSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTSVSRASAQT 233
           RS  + ++  GD A A QG V E+F ++ L    V   I++I NNQ    T+ S A + T
Sbjct: 367 RSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCT 426

Query: 234 NFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPA 293
             S    S  IP   V+G D  AV   +  AV++       ++I+++ YR  GH+  D  
Sbjct: 427 YASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEP 486

Query: 294 NYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSD 350
           ++        +RS+   ++     L+ N+  S+ +L+ +  N  K +    E+ +S+
Sbjct: 487 SFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLE--AEYKESE 541


>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
          Length = 647

 Score = 26.9 bits (58), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 98  SLTEGDQMITAYREHGH-ILACGVDASKIMAELT 130
           ++TE ++ ITAY E GH ++AC V  +  + + T
Sbjct: 398 AMTEEEKKITAYHEAGHAVVACHVPKADPLHKAT 431


>gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 438

 Score = 25.0 bits (53), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 185 VCFGDGAANQGQVYESFNIAALWNLNVIYV 214
           VC GD   +QG+  ++       NL+++Y+
Sbjct: 43  VCLGDFVVHQGKNSDNLGQVIRINLDIVYI 72


>gi|254781214|ref|YP_003065627.1| hypothetical protein CLIBASIA_05605 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 110

 Score = 23.5 bits (49), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 39 LEGFEVSEFNKEQELSAY---RLMLLIRRF 65
          LEG E++E  +++ L AY   R+ +  RRF
Sbjct: 69 LEGDELAEVRRQESLRAYEMNRIPIPARRF 98


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.134    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 224,456
Number of Sequences: 1233
Number of extensions: 9161
Number of successful extensions: 24
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 10
length of query: 364
length of database: 328,796
effective HSP length: 75
effective length of query: 289
effective length of database: 236,321
effective search space: 68296769
effective search space used: 68296769
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)