Query gi|255764491|ref|YP_003065078.2| hypothetical protein CLIBASIA_02760 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 55 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 08:23:27 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764491.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1x7fa2 c.1.8.12 (A:1-244) Out 8.1 60 0.0044 13.1 1.0 27 16-42 145-171 (244) 2 d1qo5a_ c.1.10.1 (A:) Fructose 4.2 1.2E+02 0.0089 11.5 2.5 27 27-53 38-64 (360) 3 d1j9ja_ c.106.1.1 (A:) SurE ho 4.0 1.3E+02 0.0092 11.4 1.3 13 3-15 161-173 (247) 4 d1p2fa2 c.23.1.1 (A:1-120) Res 3.8 1.3E+02 0.0096 11.3 1.7 11 1-11 1-11 (120) 5 d2je8a3 b.1.4.1 (A:679-783) Be 3.4 1.4E+02 0.01 11.1 1.6 15 2-16 11-25 (105) 6 d1d0gr1 g.24.1.1 (R:21-61) Dea 3.3 1.5E+02 0.011 11.1 0.8 18 7-26 14-31 (41) 7 d2b7ea1 a.159.2.1 (A:4-59) Pre 2.4 1.9E+02 0.014 10.4 1.7 13 42-54 43-55 (56) 8 d2bsca1 b.2.3.5 (A:1-176) Fimb 2.4 1.6E+02 0.012 10.9 -0.2 5 23-27 151-155 (176) 9 d1zaia1 c.1.10.1 (A:1-363) Fru 2.1 2.1E+02 0.015 10.2 2.4 26 28-53 39-64 (363) 10 d1j7db_ d.20.1.1 (B:) Ubiquiti 2.1 2.1E+02 0.015 10.2 0.0 8 27-34 2-9 (149) No 1 >d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]} Probab=8.06 E-value=60 Score=13.11 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=17.2 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 989436885213788888522245476 Q gi|255764491|r 16 SLECEYGRPYNGLGKRLEKYNNQRTQQ 42 (55) Q Consensus 16 sleceygrpynglgkrlekynnqrtqq 42 (55) ...-=|-|||.||+...-.-.|++-.+ T Consensus 145 acHNFYPr~~TGLs~~~f~~~n~~~k~ 171 (244) T d1x7fa2 145 GCHNFYPQKFTGLPYDYFIRCSERFKK 171 (244) T ss_dssp EECCCBCSTTCSBCHHHHHHHHHHHHH T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 864567998878899999999999997 No 2 >d1qo5a_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase {Human (Homo sapiens), liver isozyme [TaxId: 9606]} Probab=4.20 E-value=1.2e+02 Score=11.48 Aligned_cols=27 Identities=26% Similarity=0.537 Sum_probs=14.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 378888852224547678999998752 Q gi|255764491|r 27 GLGKRLEKYNNQRTQQDGKQIREKYVT 53 (55) Q Consensus 27 glgkrlekynnqrtqqdgkqirekyvt 53 (55) -.||||+.|+-.-|.....+.|+-.+| T Consensus 38 T~~Krl~~igventeenr~~yR~~l~t 64 (360) T d1qo5a_ 38 TMGNRLQRIKVENTEENRRQFREILFS 64 (360) T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHT T ss_pred CHHHHHHHCCCCCCHHHHHHHHHHHHC T ss_conf 377789876999977999999888851 No 3 >d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima [TaxId: 2336]} Probab=4.03 E-value=1.3e+02 Score=11.40 Aligned_cols=13 Identities=38% Similarity=0.409 Sum_probs=5.3 Q ss_pred EEEEEEECCEEEE Q ss_conf 5999970604689 Q gi|255764491|r 3 LNILIVNDQIKTI 15 (55) Q Consensus 3 lnilivndqikti 15 (55) |||=+-..++|-+ T Consensus 161 lNVN~P~~~~kG~ 173 (247) T d1j9ja_ 161 LNINVPAGEIKGW 173 (247) T ss_dssp EEEEECSSCCCEE T ss_pred CCCCCCHHHCCCC T ss_conf 1578980430684 No 4 >d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} Probab=3.82 E-value=1.3e+02 Score=11.30 Aligned_cols=11 Identities=36% Similarity=0.737 Sum_probs=8.3 Q ss_pred CCEEEEEEECC Q ss_conf 92599997060 Q gi|255764491|r 1 MLLNILIVNDQ 11 (55) Q Consensus 1 mllnilivndq 11 (55) |..+||||.|. T Consensus 1 mM~kILiVDDd 11 (120) T d1p2fa2 1 MMWKIAVVDDD 11 (120) T ss_dssp CCEEEEEECSC T ss_pred CCCEEEEEECC T ss_conf 99889999799 No 5 >d2je8a3 b.1.4.1 (A:679-783) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]} Probab=3.41 E-value=1.4e+02 Score=11.09 Aligned_cols=15 Identities=20% Similarity=0.609 Sum_probs=10.8 Q ss_pred CEEEEEEECCEEEEE Q ss_conf 259999706046899 Q gi|255764491|r 2 LLNILIVNDQIKTIS 16 (55) Q Consensus 2 llnilivndqiktis 16 (55) -++|.+|||..+++. T Consensus 11 ~l~iyvVsD~l~~~~ 25 (105) T d2je8a3 11 SLSVYLISDRLDTME 25 (105) T ss_dssp EEEEEEEECCSSCEE T ss_pred EEEEEEEECCCCCCC T ss_conf 899999949888665 No 6 >d1d0gr1 g.24.1.1 (R:21-61) Death receptor-5 (dr5) fragment {Human (Homo sapiens) [TaxId: 9606]} Probab=3.34 E-value=1.5e+02 Score=11.05 Aligned_cols=18 Identities=39% Similarity=0.852 Sum_probs=10.7 Q ss_pred EEECCEEEEEEEECCCCCCC Q ss_conf 97060468998943688521 Q gi|255764491|r 7 IVNDQIKTISLECEYGRPYN 26 (55) Q Consensus 7 ivndqiktisleceygrpyn 26 (55) |..|.-..| .|.||..|. T Consensus 14 ised~r~ci--sckygqdys 31 (41) T d1d0gr1 14 ISEDGRDCI--SCKYGQDYS 31 (41) T ss_dssp ECSSSSCEE--ECCTTTEEC T ss_pred CCCCCCEEE--EECCCCCCC T ss_conf 165664003--722577432 No 7 >d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=2.40 E-value=1.9e+02 Score=10.44 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=10.6 Q ss_pred HHHHHHHHHHHHC Q ss_conf 6789999987524 Q gi|255764491|r 42 QDGKQIREKYVTQ 54 (55) Q Consensus 42 qdgkqirekyvtq 54 (55) -+-||+-++|++| T Consensus 43 ~eRK~~Fe~Y~~~ 55 (56) T d2b7ea1 43 LWKKEMFEKYLSN 55 (56) T ss_dssp HHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHC T ss_conf 9999999998523 No 8 >d2bsca1 b.2.3.5 (A:1-176) Fimbrial adhesin F17-AG lectin domain {Escherichia coli [TaxId: 562]} Probab=2.37 E-value=1.6e+02 Score=10.87 Aligned_cols=5 Identities=100% Similarity=2.029 Sum_probs=0.0 Q ss_pred CCCCH Q ss_conf 85213 Q gi|255764491|r 23 RPYNG 27 (55) Q Consensus 23 rpyng 27 (55) ||||| T Consensus 151 rpyng 155 (176) T d2bsca1 151 RPYNG 155 (176) T ss_dssp EECTT T ss_pred EECCC T ss_conf 20589 No 9 >d1zaia1 c.1.10.1 (A:1-363) Fructose-1,6-bisphosphate aldolase {Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]} Probab=2.09 E-value=2.1e+02 Score=10.19 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 78888852224547678999998752 Q gi|255764491|r 28 LGKRLEKYNNQRTQQDGKQIREKYVT 53 (55) Q Consensus 28 lgkrlekynnqrtqqdgkqirekyvt 53 (55) .||||+.|+-.-|...-.+.|+-.+| T Consensus 39 ~~Krl~~igventeenr~~yR~~lft 64 (363) T d1zaia1 39 IAKRLQSIGTENTEENRRFYRQLLLT 64 (363) T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHT T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHCC T ss_conf 77789876999977899999998714 No 10 >d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Probab=2.08 E-value=2.1e+02 Score=10.25 Aligned_cols=8 Identities=50% Similarity=0.821 Sum_probs=0.0 Q ss_pred HHHHHHHH Q ss_conf 37888885 Q gi|255764491|r 27 GLGKRLEK 34 (55) Q Consensus 27 glgkrlek 34 (55) ||.|||.| T Consensus 2 ~~~kRl~k 9 (149) T d1j7db_ 2 GLPRRIIK 9 (149) T ss_dssp CSCHHHHH T ss_pred CCCHHHHH T ss_conf 85689999 Done!