Query         gi|255764491|ref|YP_003065078.2| hypothetical protein CLIBASIA_02760 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 55
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 08:23:27 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764491.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1x7fa2 c.1.8.12 (A:1-244) Out   8.1      60  0.0044   13.1   1.0   27   16-42    145-171 (244)
  2 d1qo5a_ c.1.10.1 (A:) Fructose   4.2 1.2E+02  0.0089   11.5   2.5   27   27-53     38-64  (360)
  3 d1j9ja_ c.106.1.1 (A:) SurE ho   4.0 1.3E+02  0.0092   11.4   1.3   13    3-15    161-173 (247)
  4 d1p2fa2 c.23.1.1 (A:1-120) Res   3.8 1.3E+02  0.0096   11.3   1.7   11    1-11      1-11  (120)
  5 d2je8a3 b.1.4.1 (A:679-783) Be   3.4 1.4E+02    0.01   11.1   1.6   15    2-16     11-25  (105)
  6 d1d0gr1 g.24.1.1 (R:21-61) Dea   3.3 1.5E+02   0.011   11.1   0.8   18    7-26     14-31  (41)
  7 d2b7ea1 a.159.2.1 (A:4-59) Pre   2.4 1.9E+02   0.014   10.4   1.7   13   42-54     43-55  (56)
  8 d2bsca1 b.2.3.5 (A:1-176) Fimb   2.4 1.6E+02   0.012   10.9  -0.2    5   23-27    151-155 (176)
  9 d1zaia1 c.1.10.1 (A:1-363) Fru   2.1 2.1E+02   0.015   10.2   2.4   26   28-53     39-64  (363)
 10 d1j7db_ d.20.1.1 (B:) Ubiquiti   2.1 2.1E+02   0.015   10.2   0.0    8   27-34      2-9   (149)

No 1  
>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]}
Probab=8.06  E-value=60  Score=13.11  Aligned_cols=27  Identities=15%  Similarity=0.143  Sum_probs=17.2

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             989436885213788888522245476
Q gi|255764491|r   16 SLECEYGRPYNGLGKRLEKYNNQRTQQ   42 (55)
Q Consensus        16 sleceygrpynglgkrlekynnqrtqq   42 (55)
                      ...-=|-|||.||+...-.-.|++-.+
T Consensus       145 acHNFYPr~~TGLs~~~f~~~n~~~k~  171 (244)
T d1x7fa2         145 GCHNFYPQKFTGLPYDYFIRCSERFKK  171 (244)
T ss_dssp             EECCCBCSTTCSBCHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             864567998878899999999999997


No 2  
>d1qo5a_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase {Human (Homo sapiens), liver isozyme [TaxId: 9606]}
Probab=4.20  E-value=1.2e+02  Score=11.48  Aligned_cols=27  Identities=26%  Similarity=0.537  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             378888852224547678999998752
Q gi|255764491|r   27 GLGKRLEKYNNQRTQQDGKQIREKYVT   53 (55)
Q Consensus        27 glgkrlekynnqrtqqdgkqirekyvt   53 (55)
                      -.||||+.|+-.-|.....+.|+-.+|
T Consensus        38 T~~Krl~~igventeenr~~yR~~l~t   64 (360)
T d1qo5a_          38 TMGNRLQRIKVENTEENRRQFREILFS   64 (360)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf             377789876999977999999888851


No 3  
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima [TaxId: 2336]}
Probab=4.03  E-value=1.3e+02  Score=11.40  Aligned_cols=13  Identities=38%  Similarity=0.409  Sum_probs=5.3

Q ss_pred             EEEEEEECCEEEE
Q ss_conf             5999970604689
Q gi|255764491|r    3 LNILIVNDQIKTI   15 (55)
Q Consensus         3 lnilivndqikti   15 (55)
                      |||=+-..++|-+
T Consensus       161 lNVN~P~~~~kG~  173 (247)
T d1j9ja_         161 LNINVPAGEIKGW  173 (247)
T ss_dssp             EEEEECSSCCCEE
T ss_pred             CCCCCCHHHCCCC
T ss_conf             1578980430684


No 4  
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}
Probab=3.82  E-value=1.3e+02  Score=11.30  Aligned_cols=11  Identities=36%  Similarity=0.737  Sum_probs=8.3

Q ss_pred             CCEEEEEEECC
Q ss_conf             92599997060
Q gi|255764491|r    1 MLLNILIVNDQ   11 (55)
Q Consensus         1 mllnilivndq   11 (55)
                      |..+||||.|.
T Consensus         1 mM~kILiVDDd   11 (120)
T d1p2fa2           1 MMWKIAVVDDD   11 (120)
T ss_dssp             CCEEEEEECSC
T ss_pred             CCCEEEEEECC
T ss_conf             99889999799


No 5  
>d2je8a3 b.1.4.1 (A:679-783) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=3.41  E-value=1.4e+02  Score=11.09  Aligned_cols=15  Identities=20%  Similarity=0.609  Sum_probs=10.8

Q ss_pred             CEEEEEEECCEEEEE
Q ss_conf             259999706046899
Q gi|255764491|r    2 LLNILIVNDQIKTIS   16 (55)
Q Consensus         2 llnilivndqiktis   16 (55)
                      -++|.+|||..+++.
T Consensus        11 ~l~iyvVsD~l~~~~   25 (105)
T d2je8a3          11 SLSVYLISDRLDTME   25 (105)
T ss_dssp             EEEEEEEECCSSCEE
T ss_pred             EEEEEEEECCCCCCC
T ss_conf             899999949888665


No 6  
>d1d0gr1 g.24.1.1 (R:21-61) Death receptor-5 (dr5) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.34  E-value=1.5e+02  Score=11.05  Aligned_cols=18  Identities=39%  Similarity=0.852  Sum_probs=10.7

Q ss_pred             EEECCEEEEEEEECCCCCCC
Q ss_conf             97060468998943688521
Q gi|255764491|r    7 IVNDQIKTISLECEYGRPYN   26 (55)
Q Consensus         7 ivndqiktisleceygrpyn   26 (55)
                      |..|.-..|  .|.||..|.
T Consensus        14 ised~r~ci--sckygqdys   31 (41)
T d1d0gr1          14 ISEDGRDCI--SCKYGQDYS   31 (41)
T ss_dssp             ECSSSSCEE--ECCTTTEEC
T ss_pred             CCCCCCEEE--EECCCCCCC
T ss_conf             165664003--722577432


No 7  
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.40  E-value=1.9e+02  Score=10.44  Aligned_cols=13  Identities=31%  Similarity=0.383  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             6789999987524
Q gi|255764491|r   42 QDGKQIREKYVTQ   54 (55)
Q Consensus        42 qdgkqirekyvtq   54 (55)
                      -+-||+-++|++|
T Consensus        43 ~eRK~~Fe~Y~~~   55 (56)
T d2b7ea1          43 LWKKEMFEKYLSN   55 (56)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999998523


No 8  
>d2bsca1 b.2.3.5 (A:1-176) Fimbrial adhesin F17-AG lectin domain {Escherichia coli [TaxId: 562]}
Probab=2.37  E-value=1.6e+02  Score=10.87  Aligned_cols=5  Identities=100%  Similarity=2.029  Sum_probs=0.0

Q ss_pred             CCCCH
Q ss_conf             85213
Q gi|255764491|r   23 RPYNG   27 (55)
Q Consensus        23 rpyng   27 (55)
                      |||||
T Consensus       151 rpyng  155 (176)
T d2bsca1         151 RPYNG  155 (176)
T ss_dssp             EECTT
T ss_pred             EECCC
T ss_conf             20589


No 9  
>d1zaia1 c.1.10.1 (A:1-363) Fructose-1,6-bisphosphate aldolase {Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]}
Probab=2.09  E-value=2.1e+02  Score=10.19  Aligned_cols=26  Identities=23%  Similarity=0.441  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78888852224547678999998752
Q gi|255764491|r   28 LGKRLEKYNNQRTQQDGKQIREKYVT   53 (55)
Q Consensus        28 lgkrlekynnqrtqqdgkqirekyvt   53 (55)
                      .||||+.|+-.-|...-.+.|+-.+|
T Consensus        39 ~~Krl~~igventeenr~~yR~~lft   64 (363)
T d1zaia1          39 IAKRLQSIGTENTEENRRFYRQLLLT   64 (363)
T ss_dssp             HHHHHHTTTCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf             77789876999977899999998714


No 10 
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}
Probab=2.08  E-value=2.1e+02  Score=10.25  Aligned_cols=8  Identities=50%  Similarity=0.821  Sum_probs=0.0

Q ss_pred             HHHHHHHH
Q ss_conf             37888885
Q gi|255764491|r   27 GLGKRLEK   34 (55)
Q Consensus        27 glgkrlek   34 (55)
                      ||.|||.|
T Consensus         2 ~~~kRl~k    9 (149)
T d1j7db_           2 GLPRRIIK    9 (149)
T ss_dssp             CSCHHHHH
T ss_pred             CCCHHHHH
T ss_conf             85689999


Done!