RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764491|ref|YP_003065078.2| hypothetical protein
CLIBASIA_02760 [Candidatus Liberibacter asiaticus str. psy62]
         (55 letters)



>gnl|CDD|184937 PRK14974, PRK14974, cell division protein FtsY; Provisional.
          Length = 336

 Score = 26.5 bits (59), Expect = 1.8
 Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 7/36 (19%)

Query: 2   LLNILIVNDQIKTISLECEYGRPY-------NGLGK 30
           LL +L V D    I      G+P        NG GK
Sbjct: 118 LLEVLSVGDLFDLIEEIKSKGKPVVIVFVGVNGTGK 153


>gnl|CDD|178837 PRK00068, PRK00068, hypothetical protein; Validated.
          Length = 970

 Score = 24.2 bits (53), Expect = 7.7
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 20  EYGRPYNGLGKRLEKYNNQR 39
           EYG     L   L KYN  +
Sbjct: 951 EYGEALKELDDALNKYNKAK 970


>gnl|CDD|182962 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.
          Length = 475

 Score = 24.0 bits (53), Expect = 8.7
 Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 3/31 (9%)

Query: 22  GRPYNGLGKRLEKYNNQRTQQDGKQIREKYV 52
                 L + LE   + R + +GK   E+YV
Sbjct: 233 SSELRELAQALE---SMRVKLEGKAYVEQYV 260


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 842,598
Number of extensions: 35149
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 3
Length of query: 55
Length of database: 5,994,473
Length adjustment: 27
Effective length of query: 28
Effective length of database: 5,411,057
Effective search space: 151509596
Effective search space used: 151509596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.0 bits)