RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|255764491|ref|YP_003065078.2| hypothetical protein
CLIBASIA_02760 [Candidatus Liberibacter asiaticus str. psy62]
         (55 letters)



>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA
          polymerase, disease mutation, DNA replication,
          DNA-binding, DNA-directed DNA polymerase; HET: DNA;
          3.24A {Homo sapiens} (A:852-928)
          Length = 77

 Score = 31.3 bits (71), Expect = 0.052
 Identities = 8/42 (19%), Positives = 19/42 (45%)

Query: 10 DQIKTISLECEYGRPYNGLGKRLEKYNNQRTQQDGKQIREKY 51
          +  K  +    YG       + L ++N++ TQQ+  +  ++ 
Sbjct: 26 EHAKIFNYGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQM 67


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.317    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 383,982
Number of extensions: 10901
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 55
Length of database: 4,956,049
Length adjustment: 25
Effective length of query: 30
Effective length of database: 4,110,924
Effective search space: 123327720
Effective search space used: 123327720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)