BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764491|ref|YP_003065078.2| hypothetical protein
CLIBASIA_02760 [Candidatus Liberibacter asiaticus str. psy62]
         (55 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764491|ref|YP_003065078.2| hypothetical protein CLIBASIA_02760 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 55

 Score =  112 bits (279), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/55 (100%), Positives = 55/55 (100%)

Query: 1  MLLNILIVNDQIKTISLECEYGRPYNGLGKRLEKYNNQRTQQDGKQIREKYVTQM 55
          MLLNILIVNDQIKTISLECEYGRPYNGLGKRLEKYNNQRTQQDGKQIREKYVTQM
Sbjct: 1  MLLNILIVNDQIKTISLECEYGRPYNGLGKRLEKYNNQRTQQDGKQIREKYVTQM 55


>gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 910

 Score = 23.1 bits (48), Expect = 0.98,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 27  GLGKRLEKYNNQRTQQDGKQIREKYVTQM 55
           G GKR   Y+ + + + GK IR   V+++
Sbjct: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKI 835


>gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 424

 Score = 20.4 bits (41), Expect = 5.5,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 1  MLLNILIVNDQIKTISLECE 20
          +L  I  VND+I+T  L C+
Sbjct: 62 VLKAIAFVNDEIRTALLGCD 81


>gi|254781163|ref|YP_003065576.1| hypothetical protein CLIBASIA_05350 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 214

 Score = 20.0 bits (40), Expect = 6.9,   Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 26  NGLGKRLEKYNNQRTQQD 43
           NG G+ LEK + +  ++D
Sbjct: 124 NGYGQYLEKISQKNVEKD 141


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.137    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,580
Number of Sequences: 1233
Number of extensions: 906
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 55
length of database: 328,796
effective HSP length: 27
effective length of query: 28
effective length of database: 295,505
effective search space:  8274140
effective search space used:  8274140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 31 (16.5 bits)