BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|255764492|ref|YP_003065069.2| hypothetical protein
CLIBASIA_02715 [Candidatus Liberibacter asiaticus str. psy62]
         (56 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|255764492|ref|YP_003065069.2| hypothetical protein CLIBASIA_02715 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254547843|gb|ACT57129.2| hypothetical protein CLIBASIA_02715 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 56

 Score =  113 bits (282), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 56/56 (100%), Positives = 56/56 (100%)

Query: 1  MLIQNNLTSCTGDKIKSTVDELNSISSRRQNIPPSSVISDLVVHPHEKKEPKKHHE 56
          MLIQNNLTSCTGDKIKSTVDELNSISSRRQNIPPSSVISDLVVHPHEKKEPKKHHE
Sbjct: 1  MLIQNNLTSCTGDKIKSTVDELNSISSRRQNIPPSSVISDLVVHPHEKKEPKKHHE 56


Searching..................................................done


Results from round 2





CONVERGED!
>gi|255764492|ref|YP_003065069.2| hypothetical protein CLIBASIA_02715 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254547843|gb|ACT57129.2| hypothetical protein CLIBASIA_02715 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 56

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/56 (100%), Positives = 56/56 (100%)

Query: 1  MLIQNNLTSCTGDKIKSTVDELNSISSRRQNIPPSSVISDLVVHPHEKKEPKKHHE 56
          MLIQNNLTSCTGDKIKSTVDELNSISSRRQNIPPSSVISDLVVHPHEKKEPKKHHE
Sbjct: 1  MLIQNNLTSCTGDKIKSTVDELNSISSRRQNIPPSSVISDLVVHPHEKKEPKKHHE 56


>gi|291224061|ref|XP_002732025.1| PREDICTED: CG10249-like, partial [Saccoglossus kowalevskii]
          Length = 1782

 Score = 35.1 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 2    LIQNNLTSCTGDKIKSTVDELNSISSRRQNIP---PSSVISDLVVH 44
            L +NN +S T   ++++ D +NSIS+ +QN+    P ++ +++  H
Sbjct: 1290 LSKNNASSSTAQTVETSADNVNSISTSKQNVVTQIPQNITNNIATH 1335


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.308    0.125    0.350 

Lambda     K      H
   0.267   0.0389    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 949,357,417
Number of Sequences: 14124377
Number of extensions: 23163909
Number of successful extensions: 54207
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 54205
Number of HSP's gapped (non-prelim): 7
length of query: 56
length of database: 4,842,793,630
effective HSP length: 29
effective length of query: 27
effective length of database: 4,433,186,697
effective search space: 119696040819
effective search space used: 119696040819
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 75 (33.6 bits)