RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|255764492|ref|YP_003065069.2| hypothetical protein CLIBASIA_02715 [Candidatus Liberibacter asiaticus str. psy62] (56 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 36.1 bits (83), Expect = 0.002 Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 34/85 (40%) Query: 1 MLIQNNLTSCTGDKIKSTVDELN---------SIS---SRRQNI---PPSSVISDLVVH- 44 ML ++++ T ++++ V++ N IS + + PP S+ L + Sbjct: 338 ML---SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG-LNLTL 393 Query: 45 --------------PHEKKEPKKHH 55 P +++ K + Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSN 418 >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 Score = 25.9 bits (55), Expect = 2.0 Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 1/39 (2%) Query: 12 GDKIKSTVDELNSISSRRQNIPPSSVISDLVVHPHEKKE 50 DKI ++ S R S I LV K+ Sbjct: 3 SDKIXXXXXXMDVFSDRVLLTEE-SPIRKLVPFAEMAKK 40 >2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A Length = 103 Score = 24.4 bits (53), Expect = 6.6 Identities = 4/30 (13%), Positives = 14/30 (46%) Query: 27 SRRQNIPPSSVISDLVVHPHEKKEPKKHHE 56 + + ++PP+ + ++ ++ K P Sbjct: 29 ANKMDVPPAILATNKILVDMAKMRPTTVEN 58 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.308 0.125 0.350 Gapped Lambda K H 0.267 0.0582 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 445,365 Number of extensions: 12791 Number of successful extensions: 25 Number of sequences better than 10.0: 1 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 3 Length of query: 56 Length of database: 5,693,230 Length adjustment: 28 Effective length of query: 28 Effective length of database: 5,014,398 Effective search space: 140403144 Effective search space used: 140403144 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 50 (23.4 bits)