RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|255764492|ref|YP_003065069.2| hypothetical protein
CLIBASIA_02715 [Candidatus Liberibacter asiaticus str. psy62]
         (56 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 34/85 (40%)

Query: 1   MLIQNNLTSCTGDKIKSTVDELN---------SIS---SRRQNI---PPSSVISDLVVH- 44
           ML   ++++ T ++++  V++ N          IS     +  +   PP S+   L +  
Sbjct: 338 ML---SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG-LNLTL 393

Query: 45  --------------PHEKKEPKKHH 55
                         P  +++ K  +
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSN 418


>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI,
          protein structure initiative, joint center for
          structural genomics, JCSG; HET: LLP; 2.50A {Thermotoga
          maritima} SCOP: c.67.1.1
          Length = 409

 Score = 25.9 bits (55), Expect = 2.0
 Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 1/39 (2%)

Query: 12 GDKIKSTVDELNSISSRRQNIPPSSVISDLVVHPHEKKE 50
           DKI      ++  S R       S I  LV      K+
Sbjct: 3  SDKIXXXXXXMDVFSDRVLLTEE-SPIRKLVPFAEMAKK 40


>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase;
          2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
          Length = 103

 Score = 24.4 bits (53), Expect = 6.6
 Identities = 4/30 (13%), Positives = 14/30 (46%)

Query: 27 SRRQNIPPSSVISDLVVHPHEKKEPKKHHE 56
          + + ++PP+ + ++ ++    K  P     
Sbjct: 29 ANKMDVPPAILATNKILVDMAKMRPTTVEN 58


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.308    0.125    0.350 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 445,365
Number of extensions: 12791
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 3
Length of query: 56
Length of database: 5,693,230
Length adjustment: 28
Effective length of query: 28
Effective length of database: 5,014,398
Effective search space: 140403144
Effective search space used: 140403144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.4 bits)