BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764492|ref|YP_003065069.2| hypothetical protein
CLIBASIA_02715 [Candidatus Liberibacter asiaticus str. psy62]
         (56 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764492|ref|YP_003065069.2| hypothetical protein CLIBASIA_02715 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 56

 Score =  113 bits (282), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 56/56 (100%), Positives = 56/56 (100%)

Query: 1  MLIQNNLTSCTGDKIKSTVDELNSISSRRQNIPPSSVISDLVVHPHEKKEPKKHHE 56
          MLIQNNLTSCTGDKIKSTVDELNSISSRRQNIPPSSVISDLVVHPHEKKEPKKHHE
Sbjct: 1  MLIQNNLTSCTGDKIKSTVDELNSISSRRQNIPPSSVISDLVVHPHEKKEPKKHHE 56


>gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 268

 Score = 21.2 bits (43), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 15  IKSTVDELNSISSRRQNI 32
           I ST+D+ +  SSRR N+
Sbjct: 242 IVSTLDKFSRQSSRRNNV 259


>gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 702

 Score = 20.8 bits (42), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 36  SVISDLVVHPHEKKEPKKHHE 56
           +VISD   H  E  + K++H+
Sbjct: 629 AVISDFGTHIQESMDHKRYHQ 649


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.308    0.125    0.350 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,200
Number of Sequences: 1233
Number of extensions: 995
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 56
length of database: 328,796
effective HSP length: 28
effective length of query: 28
effective length of database: 294,272
effective search space:  8239616
effective search space used:  8239616
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 31 (16.5 bits)