Query gi|255764493|ref|YP_003065056.2| hypothetical protein CLIBASIA_02650 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 60
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 16:11:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764493.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1ev7_A Type IIE restriction e 25.0 43 0.0013 16.5 2.0 22 24-45 28-49 (170)
2 >1xi4_A Clathrin heavy chain; 25.0 29 0.00085 17.4 1.1 48 1-59 1-48 (69)
3 >2k85_A Glucocorticoid recepto 19.1 32 0.00094 17.2 0.3 21 21-41 29-49 (69)
4 >3dom_A RNA polymerase II tran 16.6 36 0.0011 17.0 0.1 40 8-58 8-55 (60)
5 >3ism_C CG4930; endonuclease, 16.1 61 0.0018 15.8 1.2 21 38-58 7-27 (63)
6 >3ism_C CG4930; endonuclease, 15.6 64 0.0019 15.7 1.2 22 37-58 6-27 (71)
7 >1a0a_A BHLH, protein (phospha 12.7 1.1E+02 0.0034 14.4 1.8 20 26-45 41-60 (63)
8 >3chb_D Cholera toxin; toxin/r 11.7 83 0.0024 15.1 0.8 42 5-50 39-80 (104)
9 >1bjn_A PSAT, phosphoserine am 11.1 1.4E+02 0.0043 13.9 2.5 29 7-38 3-31 (111)
10 >1hlo_A Protein (transcription 10.3 1.5E+02 0.0046 13.7 2.5 21 26-46 46-66 (80)
No 1
>>1ev7_A Type IIE restriction endonuclease NAEI; APO-NAEI, topoisomerase, helix- turn-helix, CAP, hydrolase; 2.38A {Lechevalieria aerocolonigenes} (A:1-170)
Probab=24.98 E-value=43 Score=16.52 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 7411467889899999763365
Q gi|255764493|r 24 NSSKKLKIVKDAIDYVLDTQRE 45 (60)
Q Consensus 24 nsskklkivkdaidyvldtqre 45 (60)
....--..+.+.||+|+|+||.
T Consensus 28 dg~r~a~alR~siD~vldg~~T 49 (170)
T 1ev7_A 28 DGDRTAGVLRDTLDQLYDGQRT 49 (170)
T ss_dssp SSHHHHHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCC
T ss_conf 0779999999999998555224
No 2
>>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} (A:1210-1278)
Probab=24.98 E-value=29 Score=17.42 Aligned_cols=48 Identities=31% Similarity=0.564 Sum_probs=29.6
Q ss_pred CCCCCCEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 97621100157863567787531741146788989999976336531389999999860
Q gi|255764493|r 1 MFDSSKISFSSGADIDLLASRWQNSSKKLKIVKDAIDYVLDTQREALNAEILKFWKRVC 59 (60)
Q Consensus 1 mfdsskisfssgadidllasrwqnsskklkivkdaidyvldtqrealnaeilkfwkrvc 59 (60)
||+..||-|++-.+-.-||+-. -+|+-...|+| .-|. |.-.|-||.||
T Consensus 1 lY~aAkily~~isN~akLA~tl----V~L~~~q~AVd----aArK---Ans~ktWKeV~ 48 (69)
T 1xi4_A 1 MYDAAKLLYNNVSNFGRLASTL----VHLGEYQAAVD----GARK---ANSTRTWKEVC 48 (69)
T ss_pred CHHHHHHHHHHCCCHHHHHHHH----HHHHHHHHHHH----HHHH---CCCCHHHHHHH
T ss_conf 6899999999676389899999----98987899999----9986---38902799999
No 3
>>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens} (A:)
Probab=19.14 E-value=32 Score=17.22 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.6
Q ss_pred HHHCCCHHHHHHHHHHHHHHH
Q ss_conf 531741146788989999976
Q gi|255764493|r 21 RWQNSSKKLKIVKDAIDYVLD 41 (60)
Q Consensus 21 rwqnsskklkivkdaidyvld 41 (60)
-|.+.||+|+--.+-++||-=
T Consensus 29 ~W~~~skkl~~~~e~~~yv~L 49 (69)
T 2k85_A 29 NWLSVSRKMQASPEYQDYVYL 49 (69)
T ss_dssp CHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHH
T ss_conf 626899988758169999998
No 4
>>3dom_A RNA polymerase II transcription factor B subunit 2; protein-protein complex, heterodimer, beta-alpha-beta split, beta-strand addition; 2.60A {Saccharomyces cerevisiae} (A:49-108)
Probab=16.58 E-value=36 Score=16.96 Aligned_cols=40 Identities=28% Similarity=0.536 Sum_probs=26.2
Q ss_pred ECCCCCCHHHHHH--------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0157863567787--------53174114678898999997633653138999999986
Q gi|255764493|r 8 SFSSGADIDLLAS--------RWQNSSKKLKIVKDAIDYVLDTQREALNAEILKFWKRV 58 (60)
Q Consensus 8 sfssgadidllas--------rwqnsskklkivkdaidyvldtqrealnaeilkfwkrv 58 (60)
.|.|-+|-+.+.. -|+|+.|++-+|+. +-+.++.+||||-
T Consensus 8 ~F~s~~efe~~~~YA~e~GvLlW~~~~kr~~vVs~-----------~Gh~~V~~f~kr~ 55 (60)
T 3dom_A 8 DFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISK-----------EGNSQVLDFAKRK 55 (60)
T ss_dssp CCSCHHHHHHHHHHHHHHTCEEEEEGGGTEEEEEG-----------GGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCEEEEECCCEEEEEEEC-----------CCHHHHHHHHHHH
T ss_conf 17987999999999998196898368700899966-----------4308999999986
No 5
>>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor/hydrolase complex; 2.20A {Drosophila melanogaster} (C:104-166)
Probab=16.06 E-value=61 Score=15.76 Aligned_cols=21 Identities=33% Similarity=0.879 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 997633653138999999986
Q gi|255764493|r 38 YVLDTQREALNAEILKFWKRV 58 (60)
Q Consensus 38 yvldtqrealnaeilkfwkrv 58 (60)
.+....-|.|..+.|.||+..
T Consensus 7 WIvklRDEllkr~ll~FWrd~ 27 (63)
T 3ism_C 7 WIVKLRDEVLKKELLDFWRDV 27 (63)
T ss_dssp HHHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999987899888999
No 6
>>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor/hydrolase complex; 2.20A {Drosophila melanogaster} (C:289-359)
Probab=15.59 E-value=64 Score=15.66 Aligned_cols=22 Identities=27% Similarity=0.794 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9997633653138999999986
Q gi|255764493|r 37 DYVLDTQREALNAEILKFWKRV 58 (60)
Q Consensus 37 dyvldtqrealnaeilkfwkrv 58 (60)
+.+....-|.|..|.|.||+..
T Consensus 6 eWIvklRDEllkr~ll~FWrd~ 27 (71)
T 3ism_C 6 SWIFNLRDEVLTKELLDFWRDK 27 (71)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999999
No 7
>>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} (A:)
Probab=12.69 E-value=1.1e+02 Score=14.37 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q ss_conf 11467889899999763365
Q gi|255764493|r 26 SKKLKIVKDAIDYVLDTQRE 45 (60)
Q Consensus 26 skklkivkdaidyvldtqre 45 (60)
..|.-|+..||+|+-+-|.+
T Consensus 41 ~~Ka~IL~~ai~yI~~Lq~~ 60 (63)
T 1a0a_A 41 PSKATTVEAACRYIRHLQQN 60 (63)
T ss_dssp SCTTHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHH
T ss_conf 65999999999999999876
No 8
>>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} (D:)
Probab=11.65 E-value=83 Score=15.09 Aligned_cols=42 Identities=31% Similarity=0.382 Sum_probs=28.0
Q ss_pred CCEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1100157863567787531741146788989999976336531389
Q gi|255764493|r 5 SKISFSSGADIDLLASRWQNSSKKLKIVKDAIDYVLDTQREALNAE 50 (60)
Q Consensus 5 skisfssgadidllasrwqnsskklkivkdaidyvldtqrealnae 50 (60)
.-|+|++||....-. ..|..+.--|.+|.-.-||-|-|.-.+
T Consensus 39 viitf~ngatfqvev----pgsqh~~sqk~~~ermkdtlr~ay~t~ 80 (104)
T 3chb_D 39 AIITFKNGATFQVEV----PGSQHIDSQKKAIERMKDTLRIAYLTE 80 (104)
T ss_dssp EEEECTTCCEEEECC----CCTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCEEEEEC----CCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999942896799966----861013443507999888899999841
No 9
>>1bjn_A PSAT, phosphoserine aminotransferase; L-serine biosynthesis; HET: LLP; 2.30A {Escherichia coli} (A:1-9,A:259-360)
Probab=11.11 E-value=1.4e+02 Score=13.85 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=21.9
Q ss_pred EECCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 00157863567787531741146788989999
Q gi|255764493|r 7 ISFSSGADIDLLASRWQNSSKKLKIVKDAIDY 38 (60)
Q Consensus 7 isfssgadidllasrwqnsskklkivkdaidy 38 (60)
..||||..++-+..| +.+|.+++-+.||-
T Consensus 3 ~~~~~~~Gl~~~~~~---~~~ka~~Ly~~id~ 31 (111)
T 1bjn_A 3 FNFSSGPGVAEMDKI---NQQKAELLYGVIDN 31 (111)
T ss_dssp EECCSSSHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHH---HHHHHHHHHHHHCC
T ss_conf 774698867899999---99999998864305
No 10
>>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} (A:)
Probab=10.30 E-value=1.5e+02 Score=13.70 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 114678898999997633653
Q gi|255764493|r 26 SKKLKIVKDAIDYVLDTQREA 46 (60)
Q Consensus 26 skklkivkdaidyvldtqrea 46 (60)
..|..|+..||+|+-.-|.+.
T Consensus 46 ~sK~~iL~~Ai~yI~~L~~~~ 66 (80)
T 1hlo_A 46 ASRAQILDKATEYIQYMRRKN 66 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 899999999999999988601
Done!