Query gi|255764493|ref|YP_003065056.2| hypothetical protein CLIBASIA_02650 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 60
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 17:39:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764493.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ihb_B Regulator of G-protein 41.8 22 0.00094 17.2 3.8 42 18-59 27-68 (153)
2 1svm_A Large T antigen; AAA+ f 31.9 33 0.0014 16.3 3.3 36 11-46 66-101 (377)
3 2dlr_A RGS10, regulator of G-p 26.2 38 0.0016 16.0 2.7 41 18-58 11-51 (149)
4 1xi4_A Clathrin heavy chain; a 24.0 34 0.0014 16.3 2.1 38 19-56 1518-1558(1630)
5 1ev7_A Type IIE restriction en 20.7 42 0.0018 15.8 2.0 22 24-45 28-49 (317)
6 2k85_A Glucocorticoid receptor 19.7 21 0.00089 17.3 0.3 21 21-41 29-49 (69)
7 2i6h_A AGR_C_189P, hypothetica 18.7 27 0.0011 16.8 0.7 16 41-56 24-39 (207)
8 1dk8_A Axin; alpha-helix, PI-h 16.1 71 0.003 14.6 2.9 40 19-58 9-48 (147)
9 2v9p_A Replication protein E1; 13.4 85 0.0036 14.2 3.4 44 2-45 26-71 (305)
10 2jnu_A RGS14, regulator of G-p 11.8 96 0.004 14.0 3.4 39 20-58 9-47 (154)
No 1
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding protein G(K) subunit alpha; RGS, heterotrimeric G protein, signalling complex; HET: GDP; 2.71A {Homo sapiens} PDB: 2i59_A
Probab=41.79 E-value=22 Score=17.21 Aligned_cols=42 Identities=14% Similarity=0.306 Sum_probs=31.6
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 787531741146788989999976336531389999999860
Q gi|255764493|r 18 LASRWQNSSKKLKIVKDAIDYVLDTQREALNAEILKFWKRVC 59 (60)
Q Consensus 18 lasrwqnsskklkivkdaidyvldtqrealnaeilkfwkrvc 59 (60)
-.+||..|-..+---..+..+...--.+..+.|-|.||..|-
T Consensus 27 ~~~rw~~sl~~iL~d~~~~~~F~~Fl~~e~~~EnL~F~~~ve 68 (153)
T 2ihb_B 27 STAKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACE 68 (153)
T ss_dssp HHHHHHHCHHHHHHSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 671899849999879899999999998837888899999999
No 2
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=31.92 E-value=33 Score=16.35 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 786356778753174114678898999997633653
Q gi|255764493|r 11 SGADIDLLASRWQNSSKKLKIVKDAIDYVLDTQREA 46 (60)
Q Consensus 11 sgadidllasrwqnsskklkivkdaidyvldtqrea 46 (60)
.-++.|--|.-|.+|.-..|+|||+.|-|+...|.-
T Consensus 66 ~~~~~~~na~~fl~~~~Q~k~~kd~~~~v~~~~r~~ 101 (377)
T 1svm_A 66 YHEKHYANAAIFADSKNQKTICQQAVDTVLAKKRVD 101 (377)
T ss_dssp THHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888767989999972537999988999999999999
No 3
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.15 E-value=38 Score=16.04 Aligned_cols=41 Identities=15% Similarity=0.338 Sum_probs=28.6
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78753174114678898999997633653138999999986
Q gi|255764493|r 18 LASRWQNSSKKLKIVKDAIDYVLDTQREALNAEILKFWKRV 58 (60)
Q Consensus 18 lasrwqnsskklkivkdaidyvldtqrealnaeilkfwkrv 58 (60)
..+||..|-..+---..+..+-..--......|.|.||..|
T Consensus 11 ~~~rw~~sl~~iL~d~~~~~~F~~Fl~~e~~~enl~Fw~~v 51 (149)
T 2dlr_A 11 STAKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLAC 51 (149)
T ss_dssp CHHHHHHCHHHHHHSHHHHHHHHHHHHHHTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 89899982999988989999999999985788779999999
No 4
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis/exocytosis complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A
Probab=23.99 E-value=34 Score=16.25 Aligned_cols=38 Identities=32% Similarity=0.647 Sum_probs=29.1
Q ss_pred HHHHHCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8753174---1146788989999976336531389999999
Q gi|255764493|r 19 ASRWQNS---SKKLKIVKDAIDYVLDTQREALNAEILKFWK 56 (60)
Q Consensus 19 asrwqns---skklkivkdaidyvldtqrealnaeilkfwk 56 (60)
..||..| ||+-+.-||||++.-..+...+-.|.|.|.-
T Consensus 1518 n~rw~~si~l~Kkd~lykDAietAa~S~~~~~veeLL~~Fv 1558 (1630)
T 1xi4_A 1518 NNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFL 1558 (1630)
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 25279999998710428999999997299789999999999
No 5
>1ev7_A Type IIE restriction endonuclease NAEI; APO-NAEI, topoisomerase, helix- turn-helix, CAP, hydrolase; 2.38A {Lechevalieria aerocolonigenes} SCOP: c.52.1.9 PDB: 1iaw_A
Probab=20.69 E-value=42 Score=15.82 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 7411467889899999763365
Q gi|255764493|r 24 NSSKKLKIVKDAIDYVLDTQRE 45 (60)
Q Consensus 24 nsskklkivkdaidyvldtqre 45 (60)
...+--..+.|.||+++|+|+.
T Consensus 28 dG~r~a~alRdsiD~vldg~~T 49 (317)
T 1ev7_A 28 DGDRTAGVLRDTLDQLYDGQRT 49 (317)
T ss_dssp SSHHHHHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCC
T ss_conf 0779999999999998555225
No 6
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=19.72 E-value=21 Score=17.33 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.6
Q ss_pred HHHCCCHHHHHHHHHHHHHHH
Q ss_conf 531741146788989999976
Q gi|255764493|r 21 RWQNSSKKLKIVKDAIDYVLD 41 (60)
Q Consensus 21 rwqnsskklkivkdaidyvld 41 (60)
-|.+.||+|+--.+-++||-=
T Consensus 29 ~W~~~skkl~~~~ey~~yv~L 49 (69)
T 2k85_A 29 NWLSVSRKMQASPEYQDYVYL 49 (69)
T ss_dssp CHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHH
T ss_conf 636899998758469999998
No 7
>2i6h_A AGR_C_189P, hypothetical protein ATU0120; structural genomics, APC5905, PSI-2, protein structure initiative; 1.75A {Agrobacterium tumefaciens str} SCOP: a.118.8.5
Probab=18.70 E-value=27 Score=16.80 Aligned_cols=16 Identities=44% Similarity=0.908 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 6336531389999999
Q gi|255764493|r 41 DTQREALNAEILKFWK 56 (60)
Q Consensus 41 dtqrealnaeilkfwk 56 (60)
..+..++-++||.||.
T Consensus 24 ~~~~~~~a~~IL~FWf 39 (207)
T 2i6h_A 24 KNDTAALAADIVDFWK 39 (207)
T ss_dssp CSTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 1401568889988607
No 8
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A {Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A
Probab=16.09 E-value=71 Score=14.64 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=23.0
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8753174114678898999997633653138999999986
Q gi|255764493|r 19 ASRWQNSSKKLKIVKDAIDYVLDTQREALNAEILKFWKRV 58 (60)
Q Consensus 19 asrwqnsskklkivkdaidyvldtqrealnaeilkfwkrv 58 (60)
..||-.|-..+---+.+..|..+--....+.|.|.||..|
T Consensus 9 ~~~w~~sl~~iL~d~~~~~~F~~Fl~~~~~~e~l~F~~~v 48 (147)
T 1dk8_A 9 YLKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFAC 48 (147)
T ss_dssp HHHHHHCHHHHTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 5069986999985979999999999986552689999999
No 9
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding, early protein; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=13.42 E-value=85 Score=14.25 Aligned_cols=44 Identities=27% Similarity=0.280 Sum_probs=33.6
Q ss_pred CCCCCEEC--CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 76211001--578635677875317411467889899999763365
Q gi|255764493|r 2 FDSSKISF--SSGADIDLLASRWQNSSKKLKIVKDAIDYVLDTQRE 45 (60)
Q Consensus 2 fdsskisf--ssgadidllasrwqnsskklkivkdaidyvldtqre 45 (60)
.|.|.|.| ..-||.|.-|.-|.+|.-.-|+|||+.+-|..-.|-
T Consensus 26 ~~E~~iay~ya~~a~~d~NA~afL~sn~Qak~vkdca~mvr~ykr~ 71 (305)
T 2v9p_A 26 AEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRA 71 (305)
T ss_dssp CSHHHHHHHHHHTTTTCHHHHHHTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 6288999999876685366999997416899999999999999999
No 10
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein signalling domain, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=11.83 E-value=96 Score=13.98 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=26.4
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 753174114678898999997633653138999999986
Q gi|255764493|r 20 SRWQNSSKKLKIVKDAIDYVLDTQREALNAEILKFWKRV 58 (60)
Q Consensus 20 srwqnsskklkivkdaidyvldtqrealnaeilkfwkrv 58 (60)
.+|..|-..+---..+..|..+--......|.|.||..|
T Consensus 9 ~~w~~sl~~iL~d~~~~~~F~~Fl~~e~~~Enl~Fw~~v 47 (154)
T 2jnu_A 9 ASWALSFERLLQDPLGLAYFTEFLKKEFSAENVTFWKAC 47 (154)
T ss_dssp GGGGTCHHHHHHSHHHHHHHHHHTTTSSCTHHHHHHHHH
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 289981999986989999999999882788889999999
Done!