Query gi|255764493|ref|YP_003065056.2| hypothetical protein CLIBASIA_02650 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 60
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 08:47:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764493.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uklc_ a.38.1.1 (C:) SREBP-2 35.2 17 0.0012 16.6 3.8 30 27-56 23-54 (61)
2 d1tqha_ c.69.1.29 (A:) Carboxy 13.4 8.5 0.00062 18.2 -1.8 47 12-58 193-240 (242)
3 d3chbd_ b.40.2.1 (D:) Cholera 13.1 28 0.0021 15.5 0.8 42 5-50 38-79 (103)
4 d1agre_ a.91.1.1 (E:) Regulato 9.2 70 0.0051 13.5 3.7 41 19-59 6-46 (128)
5 d1dk8a_ a.91.1.1 (A:) Axin RGS 6.7 92 0.0067 12.8 3.1 40 19-58 9-48 (147)
6 d1nlwa_ a.38.1.1 (A:) Mad prot 6.5 95 0.0069 12.8 2.4 19 27-45 37-55 (79)
7 d2icwg1 a.202.1.1 (G:1-213) Su 6.3 97 0.007 12.7 1.9 18 36-53 83-101 (213)
8 d2op5a1 d.58.4.22 (A:4-115) Hy 6.0 92 0.0067 12.9 1.1 29 5-33 10-40 (112)
9 d1a0aa_ a.38.1.1 (A:) Pho4 B/H 5.5 1.1E+02 0.008 12.5 1.8 19 27-45 42-60 (63)
10 d2fw2a1 c.14.1.3 (A:3-260) Chr 5.1 1.2E+02 0.0084 12.4 1.2 17 8-24 58-74 (258)
No 1
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.20 E-value=17 Score=16.64 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_conf 14678898999997--6336531389999999
Q gi|255764493|r 27 KKLKIVKDAIDYVL--DTQREALNAEILKFWK 56 (60)
Q Consensus 27 kklkivkdaidyvl--dtqrealnaeilkfwk 56 (60)
.|.-|+.+||+|+- ..|.+.|..|......
T Consensus 23 ~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 54 (61)
T d1uklc_ 23 HKSGVLRKAIDYIKYLQQVNHKLRQENMVLKL 54 (61)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 69999999999999999999999999999999
No 2
>d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]}
Probab=13.43 E-value=8.5 Score=18.15 Aligned_cols=47 Identities=15% Similarity=0.356 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 8635677875317411467889899999-7633653138999999986
Q gi|255764493|r 12 GADIDLLASRWQNSSKKLKIVKDAIDYV-LDTQREALNAEILKFWKRV 58 (60)
Q Consensus 12 gadidllasrwqnsskklkivkdaidyv-ldtqrealnaeilkfwkrv 58 (60)
-.....++.++++...++.++.++-..+ ++.++|.++.+|+.|-+++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~Fl~~l 240 (242)
T d1tqha_ 193 PDSANIIYNEIESPVKQIKWYEQSGHVITLDQEKDQLHEDIYAFLESL 240 (242)
T ss_dssp TTHHHHHHHHCCCSSEEEEEETTCCSSGGGSTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 999999999747999589998999984732349999999999999758
No 3
>d3chbd_ b.40.2.1 (D:) Cholera toxin {Vibrio cholerae [TaxId: 666]}
Probab=13.11 E-value=28 Score=15.46 Aligned_cols=42 Identities=31% Similarity=0.382 Sum_probs=28.5
Q ss_pred CCEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1100157863567787531741146788989999976336531389
Q gi|255764493|r 5 SKISFSSGADIDLLASRWQNSSKKLKIVKDAIDYVLDTQREALNAE 50 (60)
Q Consensus 5 skisfssgadidllasrwqnsskklkivkdaidyvldtqrealnae 50 (60)
.-|+|++||....-. ..|..+.--|.+|.-.-||-|-|.-.+
T Consensus 38 viisf~ngatfqvev----pgsqh~~sqk~~~ermkdtlr~ay~t~ 79 (103)
T d3chbd_ 38 AIITFKNGATFQVEV----PGSQHIDSQKKAIERMKDTLRIAYLTE 79 (103)
T ss_dssp EEEECTTCCEEEECC----CCTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCEEEEEC----CCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999942896799966----861013443507999888899999841
No 4
>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.19 E-value=70 Score=13.47 Aligned_cols=41 Identities=15% Similarity=0.274 Sum_probs=23.8
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87531741146788989999976336531389999999860
Q gi|255764493|r 19 ASRWQNSSKKLKIVKDAIDYVLDTQREALNAEILKFWKRVC 59 (60)
Q Consensus 19 asrwqnsskklkivkdaidyvldtqrealnaeilkfwkrvc 59 (60)
.-||..|-..+---..+..|-..--..-...|.|.||.-|-
T Consensus 6 ~~~W~~sl~~iL~d~~~~~~F~~FL~~~~~~e~l~Fw~~ve 46 (128)
T d1agre_ 6 VKKWAESLENLINHECGLAAFKAFLKSEYSEENIDFWISCE 46 (128)
T ss_dssp HHHHTTCHHHHHHSHHHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred HHHHHHCHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 97899789999779489999999997828888899999999
No 5
>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.68 E-value=92 Score=12.85 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=18.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8753174114678898999997633653138999999986
Q gi|255764493|r 19 ASRWQNSSKKLKIVKDAIDYVLDTQREALNAEILKFWKRV 58 (60)
Q Consensus 19 asrwqnsskklkivkdaidyvldtqrealnaeilkfwkrv 58 (60)
+.||..|-..+---..+..|-..--+.-...|.|.||..|
T Consensus 9 ~~~W~~sl~~iL~d~~~~~~F~~FL~~~~~~e~l~Fwl~v 48 (147)
T d1dk8a_ 9 YLKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFAC 48 (147)
T ss_dssp HHHHHHCHHHHTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 5069984999986968999999999880777877999999
No 6
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.47 E-value=95 Score=12.79 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 1467889899999763365
Q gi|255764493|r 27 KKLKIVKDAIDYVLDTQRE 45 (60)
Q Consensus 27 kklkivkdaidyvldtqre 45 (60)
.|..|+..|++|+-.-+.+
T Consensus 37 sK~~iL~~A~~yI~~L~~~ 55 (79)
T d1nlwa_ 37 TTLSLLTKAKLHIKKLEDS 55 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999
No 7
>d2icwg1 a.202.1.1 (G:1-213) Superantigen MAM {Mycoplasma arthritidis [TaxId: 2111]}
Probab=6.33 E-value=97 Score=12.74 Aligned_cols=18 Identities=50% Similarity=0.637 Sum_probs=10.7
Q ss_pred HHHHHHHHHH-HHHHHHHH
Q ss_conf 9999763365-31389999
Q gi|255764493|r 36 IDYVLDTQRE-ALNAEILK 53 (60)
Q Consensus 36 idyvldtqre-alnaeilk 53 (60)
..-|+|+||. +-|.|-.|
T Consensus 83 l~vv~d~qrke~nnveqik 101 (213)
T d2icwg1 83 LSVVFDTQRKEANNVEQIK 101 (213)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHEEECCCCCCCCHHHHH
T ss_conf 8503430024777699998
No 8
>d2op5a1 d.58.4.22 (A:4-115) Hypothetical protein GOS_7213774 {environmental samples}
Probab=6.00 E-value=92 Score=12.86 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=20.8
Q ss_pred CCEECCCCCCHHHHHHHHHC-CCH-HHHHHH
Q ss_conf 11001578635677875317-411-467889
Q gi|255764493|r 5 SKISFSSGADIDLLASRWQN-SSK-KLKIVK 33 (60)
Q Consensus 5 skisfssgadidllasrwqn-ssk-klkivk 33 (60)
.-+.|.|-+|.+|.-.+|+. .+. -++..|
T Consensus 10 ~~~dF~Se~dmel~~~~~e~~~~~~~~~~Lk 40 (112)
T d2op5a1 10 LFMDFTSENELELFLKSLDEVWSEDLYSRLS 40 (112)
T ss_dssp EEEECSSHHHHHHHHTTHHHHSCHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9887499999999999999877599999998
No 9
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.48 E-value=1.1e+02 Score=12.47 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 1467889899999763365
Q gi|255764493|r 27 KKLKIVKDAIDYVLDTQRE 45 (60)
Q Consensus 27 kklkivkdaidyvldtqre 45 (60)
.|..|+..|++|+-.-|++
T Consensus 42 sKa~iL~~Av~yI~~Lq~~ 60 (63)
T d1a0aa_ 42 SKATTVEAACRYIRHLQQN 60 (63)
T ss_dssp CTTHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 0999999999999999976
No 10
>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.14 E-value=1.2e+02 Score=12.35 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=0.0
Q ss_pred ECCCCCCHHHHHHHHHC
Q ss_conf 01578635677875317
Q gi|255764493|r 8 SFSSGADIDLLASRWQN 24 (60)
Q Consensus 8 sfssgadidllasrwqn 24 (60)
.||+|+|+.-+....++
T Consensus 58 ~FsaG~Dl~~~~~~~~~ 74 (258)
T d2fw2a1 58 VFCCGLDFGYFVRHLRN 74 (258)
T ss_dssp CSBCCBCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHCCCC
T ss_conf 10234321111100122
Done!