RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|255764493|ref|YP_003065056.2| hypothetical protein
CLIBASIA_02650 [Candidatus Liberibacter asiaticus str. psy62]
         (60 letters)



>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
           hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
           3e3a_A 3hys_A 3hzo_A
          Length = 293

 Score = 30.6 bits (68), Expect = 0.098
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 18  LASRWQNSSKKLKIVKDAIDYVLDTQREALNAEILKFWKRV 58
           +A    N   +   + DA       + EA+N  +LKF+  V
Sbjct: 253 VADALPNG--RYLQIPDAGHLGFFERPEAVNTAMLKFFASV 291


>3fo3_A Eight-heme nitrite reductase; alpha protein, eight hemes C,
           oxidoreductase; HET: HEC PG6 PG4; 1.40A
           {Thioalkalivibrio nitratireducens} PDB: 3d1i_A* 3f29_A*
           2zo5_A* 3gm6_A* 2ot4_A*
          Length = 525

 Score = 27.4 bits (59), Expect = 0.73
 Identities = 4/31 (12%), Positives = 14/31 (45%), Gaps = 3/31 (9%)

Query: 24  NSSKKLKIVKDAIDYVLDTQ---REALNAEI 51
           N  +  + +  +I    +      +A++A++
Sbjct: 492 NPDQARESLMTSISKSKEAVSLLNDAIDAQV 522


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.6 bits (61), Expect = 0.80
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 13/57 (22%)

Query: 2   FDSSKISFSSGADIDLLASRWQNSS-----KKLKIVKDAIDYVLDTQREALNAEILK 53
           F++    +  G DI  LA++    +     K  +++K   +Y+  T R        K
Sbjct: 91  FENC---YLEGNDIHALAAKLLQENDTTLVKTKELIK---NYI--TARIMAKRPFDK 139


>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication,
          DNA translocation, nucleotide-binding, DNA-binding,
          early protein; 3.00A {Bovine papillomavirus type 1}
          PDB: 2gxa_A*
          Length = 305

 Score = 26.7 bits (59), Expect = 1.4
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 1  MFDSSKISFSSG--ADIDLLASRWQNSSKKLKIVKDAIDYVL 40
            + SKI++     A  D  A  +  ++ + K VKD    V 
Sbjct: 25 YAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVR 66


>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus} PDB: 3lvh_A
          Length = 624

 Score = 26.4 bits (57), Expect = 1.7
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 19  ASRWQNS---SKKLKIVKDAIDYVLDTQREALNAEILKF 54
            +RW+ S    KK  + KDA+ Y  +++   L  E+L++
Sbjct: 467 NNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQW 505


>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
            endocytosis/exocytosis complex; 7.90A {Bos taurus} SCOP:
            i.23.1.1 PDB: 1xi5_A
          Length = 1630

 Score = 26.2 bits (58), Expect = 1.7
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 20   SRWQNS---SKKLKIVKDAIDYVLDTQREALNAEILKF 54
            +RW+ S    KK  + KDA+ Y  +++   L  E+L++
Sbjct: 1519 NRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQW 1556


>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2);
          oxidoreductase, peroxisomes, beta-oxidation, fatty acid
          oxidation; 2.50A {Arabidopsis thaliana}
          Length = 725

 Score = 25.1 bits (54), Expect = 4.1
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 8  SFSSGADIDLLASRWQNSSKKLKIVKDAIDYVLD 41
           FS G DI       + + K+ K    +ID + D
Sbjct: 63 RFSGGFDISGFGEMQKGNVKEPKAGYISIDIITD 96


>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
           virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
           2h1l_A
          Length = 377

 Score = 24.2 bits (52), Expect = 7.4
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 13  ADIDLLASRWQNSSKKLKIVKDAIDYVLDTQRE 45
                 A+ + +S  +  I + A+D VL  +R 
Sbjct: 68  EKHYANAAIFADSKNQKTICQQAVDTVLAKKRV 100


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.130    0.379 

Gapped
Lambda     K      H
   0.267   0.0469    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 505,965
Number of extensions: 15847
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 14
Length of query: 60
Length of database: 5,693,230
Length adjustment: 31
Effective length of query: 29
Effective length of database: 4,941,666
Effective search space: 143308314
Effective search space used: 143308314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.7 bits)