RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|255764493|ref|YP_003065056.2| hypothetical protein
CLIBASIA_02650 [Candidatus Liberibacter asiaticus str. psy62]
         (60 letters)



>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12
           (Escherichia coli K-12) [TaxId: 83333]}
          Length = 467

 Score = 23.8 bits (50), Expect = 4.4
 Identities = 4/27 (14%), Positives = 14/27 (51%)

Query: 13  ADIDLLASRWQNSSKKLKIVKDAIDYV 39
            ++ +L  ++ +  +K+ ++K    Y 
Sbjct: 438 DELQMLVQQYADDKEKVALLKALWQYA 464


>d1hx6a2 b.121.2.1 (A:245-384) Coat protein p3 {Bacteriophage prd1
          [TaxId: 10658]}
          Length = 140

 Score = 22.8 bits (48), Expect = 7.6
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 1  MFDSSKISFSSGADIDLLASRWQNSSKKLKIVKDAIDYVLDTQR 44
          +FD+   SF++G DI+ L+ R  N S   K+  D   +   T+R
Sbjct: 46 VFDNGG-SFNAGTDINYLSQRTANFSDTRKL--DPKTWAAQTRR 86


>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
          domain {Simian virus 40 [TaxId: 10633]}
          Length = 362

 Score = 22.7 bits (48), Expect = 9.4
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 13 ADIDLLASRWQNSSKKLKIVKDAIDYVLDTQR 44
                A+ + +S  +  I + A+D VL  +R
Sbjct: 53 EKHYANAAIFADSKNQKTICQQAVDTVLAKKR 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.130    0.379 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 219,876
Number of extensions: 6865
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 9
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)