BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764493|ref|YP_003065056.2| hypothetical protein
CLIBASIA_02650 [Candidatus Liberibacter asiaticus str. psy62]
         (60 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764493|ref|YP_003065056.2| hypothetical protein CLIBASIA_02650 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 60

 Score =  120 bits (301), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 1  MFDSSKISFSSGADIDLLASRWQNSSKKLKIVKDAIDYVLDTQREALNAEILKFWKRVCN 60
          MFDSSKISFSSGADIDLLASRWQNSSKKLKIVKDAIDYVLDTQREALNAEILKFWKRVCN
Sbjct: 1  MFDSSKISFSSGADIDLLASRWQNSSKKLKIVKDAIDYVLDTQREALNAEILKFWKRVCN 60


>gi|254780482|ref|YP_003064895.1| ribonuclease P [Candidatus Liberibacter asiaticus str. psy62]
          Length = 123

 Score = 21.6 bits (44), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 4/30 (13%)

Query: 31  IVKDAIDYVLDTQREALNAEILKFWKRVCN 60
           ++K   DYVL  +R+AL       +K +CN
Sbjct: 75  VLKHGHDYVLIAKRDALFIP----FKELCN 100


>gi|254780534|ref|YP_003064947.1| acyl carrier protein [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 85

 Score = 20.8 bits (42), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 23 QNSSKKLKIVKDAIDYV 39
          + S+ K+  VKDA+D++
Sbjct: 62 EESANKILTVKDAVDFI 78


>gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 500

 Score = 20.8 bits (42), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 23  QNSSKKLKIVKDAIDYVLDTQREALNAEI 51
           +N ++ L+  +DA+DY   ++ + L  EI
Sbjct: 278 KNETRSLRTKEDALDYRYFSEPDLLPLEI 306


>gi|254780795|ref|YP_003065208.1| homoserine kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 316

 Score = 20.4 bits (41), Expect = 5.6,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 12  GADIDLLASRWQNSSK----KLKIVKDAIDYVLDTQ 43
           GA +    +R  +S       L I KD ++Y+L T+
Sbjct: 268 GAALRFFLTRLYDSQNMPCNALTITKDPMEYILKTR 303


>gi|254780274|ref|YP_003064687.1| lysophospholipase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 317

 Score = 20.4 bits (41), Expect = 6.2,   Method: Composition-based stats.
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 22  WQNSSKKLKIVKDAIDYVLDT 42
           W+N  K   + K++ +Y+LD+
Sbjct: 184 WKNFLKDHSVKKNSQNYILDS 204


>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1386

 Score = 19.6 bits (39), Expect = 9.8,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 12   GADIDLLASRWQNSSKKLKI 31
            G  IDL  SR +NS+K  +I
Sbjct: 1358 GLSIDLENSRTKNSAKMEEI 1377


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.130    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,120
Number of Sequences: 1233
Number of extensions: 880
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 60
length of database: 328,796
effective HSP length: 32
effective length of query: 28
effective length of database: 289,340
effective search space:  8101520
effective search space used:  8101520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.9 bits)
S2: 31 (16.5 bits)