HHsearch alignment for GI: 255764494 and conserved domain: COG4972
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=98.24 E-value=0.00025 Score=51.48 Aligned_cols=204 Identities=20% Similarity=0.283 Sum_probs=114.7
Q ss_pred HHHHHHHHCCCCC-----EEEEEECCCCCC-------CHH----HHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC-----
Q ss_conf 9999998388473-----369853778874-------025----7886344211222222221024788886034-----
Q gi|255764494|r 124 KETAESFLGETVS-----KAVITVPAYFND-------AQR----QATKDAGRIAGLDVLRIINEPTAAALAYGLD----- 182 (652)
Q Consensus 124 k~~ae~~l~~~v~-----~~VitVP~~f~~-------~qR----~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~----- 182 (652)
T Consensus 108 ~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~ 187 (354)
T COG4972 108 ESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFG 187 (354)
T ss_pred HHHHHHCCCCCHHHCCCCEEEECCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHC
T ss_conf 99876348986353243217834655788627999997105666788999997699745885187899999999998757
Q ss_pred C-CCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 4-565507998724411454310102314654201332245521344766553678764201343024478999999999
Q gi|255764494|r 183 K-KDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAA 261 (652)
Q Consensus 183 ~-~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~ 261 (652)
T Consensus 188 ~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~~g~~Qlt~~i~--------r~~~L~~~~-----------a 243 (354)
T COG4972 188 PEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVPVGTDQLTQEIQ--------RAYSLTEEK-----------A 243 (354)
T ss_pred CCHHHHHHEEEEECCCCEEEEEEECCEEEE-----EEECCCCHHHHHHHHH--------HHHCCCHHH-----------H
T ss_conf 860223320356224533799998790356-----7614574899999999--------985899667-----------6
Q ss_pred HHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCHH--CCCCCEEEEEEEECCCCC
Q ss_conf 988541155650358630443467887212687311000012342000011001111010--135631101466307853
Q gi|255764494|r 262 EKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQD--AGLSPSDIDEVVLVGGMT 339 (652)
Q Consensus 262 e~aK~~LS~~~~~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~--a~~~~~~I~~V~lvGGss 339 (652)
T Consensus 244 ~~~k~~~~~P~-----------------~y~~--------~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA 298 (354)
T COG4972 244 EEIKRGGTLPT-----------------DYGS--------EVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGA 298 (354)
T ss_pred HHHHHCCCCCC-----------------CHHH--------HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
T ss_conf 89872789998-----------------4567--------8888889999999999999987435651454799846961
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 05677886541011111113565310111110002234
Q gi|255764494|r 340 RMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVL 377 (652)
Q Consensus 340 riP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~a~~l 377 (652)
T Consensus 299 ~l~gL~~~i~qrl~~~-t~vanPf~~~~~~~~v~k~~l 335 (354)
T COG4972 299 SLEGLAAAIQQRLSIP-TEVANPFAYMALNVKVNKGYL 335 (354)
T ss_pred CHHHHHHHHHHHHCCC-EEEECHHHHHHHHHCCCCCCC
T ss_conf 0663999999873898-076277898765212333651