HHsearch alignment for GI: 255764494 and conserved domain: TIGR00904
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis . Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor . The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography . It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes .; GO: 0000902 cell morphogenesis.
Probab=99.98 E-value=9.8e-32 Score=259.14 Aligned_cols=310 Identities=26% Similarity=0.389 Sum_probs=229.9
Q ss_pred CCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCC-----C--EEECHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 816998048660699999899559975689862562799994899-----8--996678986333083511002067549
Q gi|255764494|r 2 SKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEG-----E--RLVGQPAKRQAVTNPSNTIFAAKRLIG 74 (652)
Q Consensus 2 s~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~-----~--~~vG~~A~~~~~~~p~~ti~~~KrliG 74 (652)
T Consensus 2 S~d~gIDLGTANTlV-yVkg~G--IVl~E------PSVVA~~~~~f~~~~~~v~AVG~~AK~MLGkTP~nI~-Ai----- 66 (337)
T TIGR00904 2 SSDIGIDLGTANTLV-YVKGRG--IVLNE------PSVVAIRTDRFDAKTKSVLAVGHEAKEMLGKTPGNIV-AI----- 66 (337)
T ss_pred CCCCCHHHCCCCEEE-EECCCE--EEEEC------CCEEEEEECCCCCCCCEEEEEEHHHHHHCCCCCCCCE-EE-----
T ss_conf 665200110303468-883502--79517------8458886043057542168850046530287988726-86-----
Q ss_pred CCCCCHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHH---HHCCCCCEEEEEECCCCCCCHH
Q ss_conf 8687267876520198699975998279995795871999999999999999999---8388473369853778874025
Q gi|255764494|r 75 RRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAES---FLGETVSKAVITVPAYFNDAQR 151 (652)
Q Consensus 75 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~---~l~~~v~~~VitVP~~f~~~qR 151 (652)
T Consensus 67 -------------------RPlKDGVIA------D---f~~Te~MlkYFI~~v~~rk~~~~-P~P~~~icVP~GiT~VEr 117 (337)
T TIGR00904 67 -------------------RPLKDGVIA------D---FEVTEKMLKYFIKKVHSRKSFFR-PKPRIVICVPSGITPVER 117 (337)
T ss_pred -------------------CCCCCCCCC------C---HHHHHHHHHHHHHHHHCCCCCCC-CCCEEEEEECCCCCHHHH
T ss_conf -------------------468885124------7---68999999999999856775368-987699985379986678
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 78863442112222222210247888860344565507998724411454310102314654201332245521344766
Q gi|255764494|r 152 QATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCL 231 (652)
Q Consensus 152 ~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l 231 (652)
T Consensus 118 RAV~esA~~AGAREV~lIEEPmAAAIGA~LPV~EP~GsMvvDIGGGTTEvaVISLgGiV---~S-~-SiRvgGDefDeaI 192 (337)
T TIGR00904 118 RAVKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIV---VS-R-SIRVGGDEFDEAI 192 (337)
T ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHCCCCCCCCCCCCEEEECCCCCEEEEEEECCCEE---EE-E-EEEECCCHHHHHH
T ss_conf 99999985079707886234137863587380467668789848872230021105456---76-5-4443143011688
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCE---EEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 553678764201343024478999999999988541155-650---3586304434678872126873110000123420
Q gi|255764494|r 232 VEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSS-TSQ---TEINLPFISANSAGAQHLNMKLTRAQFERLVNHL 307 (652)
Q Consensus 232 ~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~-~~~---~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l 307 (652)
T Consensus 193 I~YiRr~----ynllIGe~---------TAE~IKieIGsA~~~~~~e~~~mEv~GrD~~~GlPr~~~i~s~ev~EaL~ep 259 (337)
T TIGR00904 193 INYIRRT----YNLLIGER---------TAERIKIEIGSAYPEENDEERKMEVRGRDLVTGLPRTIEINSVEVREALQEP 259 (337)
T ss_pred HHHHHHH----CCCCCCCH---------HHHHHHHHHCCEECCCCCCEEEEEEECCHHHCCCCCEEEECHHHHHHHHHHH
T ss_conf 9988864----38556712---------3888745444310167886003555011321127720577628999988736
Q ss_pred HHHHHHCCCCCCHHCCCCC-EEEE--EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 0001100111101013563-1101--4663078530567788654101111111356531011111000
Q gi|255764494|r 308 IQKTVEPCKKCLQDAGLSP-SDID--EVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQ 373 (652)
Q Consensus 308 ~~~~~~~i~~~L~~a~~~~-~~I~--~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~ 373 (652)
T Consensus 260 v~~IV~aVk~tLE~tPPELA~DIveRGiVLTGGGaLLrnLDk~lS~eTg~PV~~Ad~PL~cVA~G~G~~ 328 (337)
T TIGR00904 260 VNQIVEAVKSTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVALGTGKA 328 (337)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHCCEEEECCHHHHHCCCHHHHHHCCCCEEECCCCHHHHHHHHHHH
T ss_conf 889999999875168870465776469376263054521015877734863688687133587654289