HHsearch alignment for GI: 255764494 and conserved domain: TIGR00904

>TIGR00904 mreB cell shape determining protein, MreB/Mrl family; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis . Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor . The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography . It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes .; GO: 0000902 cell morphogenesis.
Probab=99.98  E-value=9.8e-32  Score=259.14  Aligned_cols=310  Identities=26%  Similarity=0.389  Sum_probs=229.9

Q ss_pred             CCEEEEECCCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEECCC-----C--EEECHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf             816998048660699999899559975689862562799994899-----8--996678986333083511002067549
Q gi|255764494|r    2 SKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEG-----E--RLVGQPAKRQAVTNPSNTIFAAKRLIG   74 (652)
Q Consensus         2 s~viGIDlGtt~s~va~~~~~~~~ii~n~~g~r~~PS~V~~~~~~-----~--~~vG~~A~~~~~~~p~~ti~~~KrliG   74 (652)
T Consensus         2 S~d~gIDLGTANTlV-yVkg~G--IVl~E------PSVVA~~~~~f~~~~~~v~AVG~~AK~MLGkTP~nI~-Ai-----   66 (337)
T TIGR00904         2 SSDIGIDLGTANTLV-YVKGRG--IVLNE------PSVVAIRTDRFDAKTKSVLAVGHEAKEMLGKTPGNIV-AI-----   66 (337)
T ss_pred             CCCCCHHHCCCCEEE-EECCCE--EEEEC------CCEEEEEECCCCCCCCEEEEEEHHHHHHCCCCCCCCE-EE-----
T ss_conf             665200110303468-883502--79517------8458886043057542168850046530287988726-86-----


Q ss_pred             CCCCCHHHHHHHHCCCEEEEECCCCEEEEEECCEEECHHHHHHHHHHHHHHHHHH---HHCCCCCEEEEEECCCCCCCHH
Q ss_conf             8687267876520198699975998279995795871999999999999999999---8388473369853778874025
Q gi|255764494|r   75 RRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAES---FLGETVSKAVITVPAYFNDAQR  151 (652)
Q Consensus        75 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peei~a~iL~~lk~~ae~---~l~~~v~~~VitVP~~f~~~qR  151 (652)
T Consensus        67 -------------------RPlKDGVIA------D---f~~Te~MlkYFI~~v~~rk~~~~-P~P~~~icVP~GiT~VEr  117 (337)
T TIGR00904        67 -------------------RPLKDGVIA------D---FEVTEKMLKYFIKKVHSRKSFFR-PKPRIVICVPSGITPVER  117 (337)
T ss_pred             -------------------CCCCCCCCC------C---HHHHHHHHHHHHHHHHCCCCCCC-CCCEEEEEECCCCCHHHH
T ss_conf             -------------------468885124------7---68999999999999856775368-987699985379986678


Q ss_pred             HHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf             78863442112222222210247888860344565507998724411454310102314654201332245521344766
Q gi|255764494|r  152 QATKDAGRIAGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCL  231 (652)
Q Consensus       152 ~a~~~Aa~~AGl~v~~li~EptAAal~Y~~~~~~~~~vlV~D~Gggt~dvsi~~~~~~~~~vl~~~gd~~lGG~d~D~~l  231 (652)
T Consensus       118 RAV~esA~~AGAREV~lIEEPmAAAIGA~LPV~EP~GsMvvDIGGGTTEvaVISLgGiV---~S-~-SiRvgGDefDeaI  192 (337)
T TIGR00904       118 RAVKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIV---VS-R-SIRVGGDEFDEAI  192 (337)
T ss_pred             HHHHHHHHHCCCEEEEEECCCHHHHHCCCCCCCCCCCCEEEECCCCCEEEEEEECCCEE---EE-E-EEEECCCHHHHHH
T ss_conf             99999985079707886234137863587380467668789848872230021105456---76-5-4443143011688


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCE---EEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf             553678764201343024478999999999988541155-650---3586304434678872126873110000123420
Q gi|255764494|r  232 VEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSS-TSQ---TEINLPFISANSAGAQHLNMKLTRAQFERLVNHL  307 (652)
Q Consensus       232 ~~~~~~~~~~~~~~d~~~~~~a~~rL~~~~e~aK~~LS~-~~~---~~i~i~~~~~~~~~g~d~~~~itR~~fe~l~~~l  307 (652)
T Consensus       193 I~YiRr~----ynllIGe~---------TAE~IKieIGsA~~~~~~e~~~mEv~GrD~~~GlPr~~~i~s~ev~EaL~ep  259 (337)
T TIGR00904       193 INYIRRT----YNLLIGER---------TAERIKIEIGSAYPEENDEERKMEVRGRDLVTGLPRTIEINSVEVREALQEP  259 (337)
T ss_pred             HHHHHHH----CCCCCCCH---------HHHHHHHHHCCEECCCCCCEEEEEEECCHHHCCCCCEEEECHHHHHHHHHHH
T ss_conf             9988864----38556712---------3888745444310167886003555011321127720577628999988736


Q ss_pred             HHHHHHCCCCCCHHCCCCC-EEEE--EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf             0001100111101013563-1101--4663078530567788654101111111356531011111000
Q gi|255764494|r  308 IQKTVEPCKKCLQDAGLSP-SDID--EVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQ  373 (652)
Q Consensus       308 ~~~~~~~i~~~L~~a~~~~-~~I~--~V~lvGGssriP~v~~~i~~~fg~~~~~~~npdeaVa~GAA~~  373 (652)
T Consensus       260 v~~IV~aVk~tLE~tPPELA~DIveRGiVLTGGGaLLrnLDk~lS~eTg~PV~~Ad~PL~cVA~G~G~~  328 (337)
T TIGR00904       260 VNQIVEAVKSTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVALGTGKA  328 (337)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHCCEEEECCHHHHHCCCHHHHHHCCCCEEECCCCHHHHHHHHHHH
T ss_conf             889999999875168870465776469376263054521015877734863688687133587654289