RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|255764494|ref|YP_003065050.2| molecular chaperone DnaK
[Candidatus Liberibacter asiaticus str. psy62]
         (652 letters)



>gnl|CDD|143803 pfam00012, HSP70, Hsp70 protein.  Hsp70 chaperones help to fold
           many proteins. Hsp70 assisted folding involves repeated
           cycles of substrate binding and release. Hsp70 activity
           is ATP dependent. Hsp70 proteins are made up of two
           regions: the amino terminus is the ATPase domain and the
           carboxyl terminus is the substrate binding region.
          Length = 598

 Score =  952 bits (2462), Expect = 0.0
 Identities = 395/603 (65%), Positives = 484/603 (80%), Gaps = 10/603 (1%)

Query: 4   VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPS 63
           VIGIDLGTTNSCVA+M+G    VI N EG RTTPS+V FT + ERLVGQ AKRQAVTNP 
Sbjct: 1   VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPK-ERLVGQAAKRQAVTNPK 59

Query: 64  NTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEA--QGKQYSPSQISAIVLQ 121
           NT+F+ KRLIGR+F+D  V +D   VP+K+V+   GDA +E    G+ ++P QISA+VLQ
Sbjct: 60  NTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQ 119

Query: 122 KMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGL 181
           K+KETAE++LG+ V+ AVITVPAYFNDAQRQATKDAGRIAGL+VLRIINEPTAAALAYGL
Sbjct: 120 KLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGL 179

Query: 182 DKKDA-RTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK 240
           DKKD  R V+VFD GGGTFDVS+LE+GDGVFEV ATNGDT LGGEDFD+ LV+H  + FK
Sbjct: 180 DKKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEFK 239

Query: 241 KENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF 300
           K+ GIDL +D  ALQRL+EAAEKAKIELSS +QTEINLPFI+A + G + ++  LTRA+F
Sbjct: 240 KKYGIDLSKDPRALQRLREAAEKAKIELSS-NQTEINLPFITAMADG-KDVSGTLTRAKF 297

Query: 301 ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGV 360
           E L   L ++T+EP +K L+DA LS S+IDEVVLVGG TR+P +Q+ V++FF K PSK V
Sbjct: 298 EELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKTV 357

Query: 361 NPDEVVAMGAAIQAGVLQG--DVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKS 418
           NPDE VA+GAA+QAGVL G  DVKD+LLLDVTPLSLGIETLGGV T +I RN+TIPTKKS
Sbjct: 358 NPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKS 417

Query: 419 QVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGI 478
           Q+FSTAADNQ+AV I++ QGER+M  DNKLLG F+L GIPPAP+G PQIEV FDIDANGI
Sbjct: 418 QIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGI 477

Query: 479 VQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLI 538
           + VSA DKGTGK Q+I+I  S GLS ++IE+MVKDAE  A  DKKR+E +E KN AE  +
Sbjct: 478 LTVSAKDKGTGKEQKITITNSSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYV 537

Query: 539 YSTEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKA 598
           YS E+SL+E GDK+ EA++K + E+I+ L+  L   D +E  I+  T++L +V   +G+ 
Sbjct: 538 YSLEKSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDKEE--IEAKTEELQKVVQPIGER 595

Query: 599 IYE 601
           +Y+
Sbjct: 596 MYQ 598


>gnl|CDD|35325 KOG0102, KOG0102, KOG0102, Molecular chaperones
           mortalin/PBP74/GRP75, HSP70 superfamily
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 640

 Score =  836 bits (2162), Expect = 0.0
 Identities = 409/608 (67%), Positives = 488/608 (80%), Gaps = 1/608 (0%)

Query: 3   KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNP 62
           KVIGIDLGTTNSCVA+M+GK  ++IENAEG RTTPS+V FT +GERLVG PAKRQAVTNP
Sbjct: 28  KVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNP 87

Query: 63  SNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQK 122
            NT FA KRLIGRRF+D  V KD   VP+KIV+   GDAW+EA+GKQYSPSQI A VL K
Sbjct: 88  ENTFFATKRLIGRRFDDPEVQKDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMK 147

Query: 123 MKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLD 182
           MKETAE++LG+ V  AVITVPAYFND+QRQATKDAG+IAGL+VLR+INEPTAAALAYGLD
Sbjct: 148 MKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLD 207

Query: 183 KKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKE 242
           KK+   + VFD GGGTFD+S+LE+ DGVFEVK+TNGDT LGGEDFD+ LV  I   FKKE
Sbjct: 208 KKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKE 267

Query: 243 NGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFER 302
            GIDL +D +ALQRL+EAAEKAKIELSS  QTEINLPFI+A+++G +HLN++LTR +FE 
Sbjct: 268 EGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEE 327

Query: 303 LVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNP 362
           LV  LI +T+EPCKK L+DA LS SDI+EV+LVGGMTRMPK+Q +V++ F K PSKGVNP
Sbjct: 328 LVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNP 387

Query: 363 DEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQVFS 422
           DE VA GAAIQ GVL G+VKD+LLLDVTPLSLGIETLGGVFT +I RN+TIPTKKSQVFS
Sbjct: 388 DEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFS 447

Query: 423 TAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQVS 482
           TAAD Q+ V I++ QGER+M  DNKLLG F L GIPPAP+G PQIEV FDIDANGI  VS
Sbjct: 448 TAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGIGTVS 507

Query: 483 ALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTE 542
           A DKGTGK+Q I+I +SGGLS ++IE MV +AE  A  DK++REA+ETKN A+S+IY TE
Sbjct: 508 AKDKGTGKSQSITIASSGGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTE 567

Query: 543 QSLREHGDKIAEAEQKSIRESIDALRTLLNDADP-DESKIKEATQKLMEVSMNLGKAIYE 601
           +SL+E  +KI   E + + E I  LR L+ + D  D  +IK+A   L + S+ L ++ Y+
Sbjct: 568 KSLKEFEEKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYK 627

Query: 602 AQAKKDAA 609
                   
Sbjct: 628 NMGAGGEG 635


>gnl|CDD|177026 CHL00094, dnaK, heat shock protein 70.
          Length = 621

 Score =  802 bits (2073), Expect = 0.0
 Identities = 366/636 (57%), Positives = 468/636 (73%), Gaps = 18/636 (2%)

Query: 1   MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60
           M KV+GIDLGTTNS VA+M+G    VI NAEG RTTPS+V +T +G+ LVGQ AKRQAV 
Sbjct: 1   MGKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVI 60

Query: 61  NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIE--AQGKQYSPSQISAI 118
           NP NT ++ KR IGR+F++  ++++A  V +K+     G+  IE  A  K +SP +ISA 
Sbjct: 61  NPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQ 118

Query: 119 VLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALA 178
           VL+K+ E A  +LGETV++AVITVPAYFND+QRQATKDAG+IAGL+VLRIINEPTAA+LA
Sbjct: 119 VLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLA 178

Query: 179 YGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT 238
           YGLDKK+  T++VFD GGGTFDVS+LE+GDGVFEV +T+GDT LGG+DFD  +V  +   
Sbjct: 179 YGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKE 238

Query: 239 FKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRA 298
           FKK+ GIDL +D  ALQRL EAAEKAKIELS+ +QTEINLPFI+A   G +H+   LTRA
Sbjct: 239 FKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRA 298

Query: 299 QFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSK 358
           +FE L + LI +   P +  L+DA L  SDIDEVVLVGG TR+P IQ+ V+    K P++
Sbjct: 299 KFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQ 358

Query: 359 GVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKS 418
            VNPDEVVA+GAA+QAGVL G+VKD+LLLDVTPLSLG+ETLGGV T II RN+TIPTKKS
Sbjct: 359 SVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKS 418

Query: 419 QVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGI 478
           +VFSTA DNQ+ V I + QGER++  DNK LG F L GIPPAP+G PQIEV FDIDANGI
Sbjct: 419 EVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGI 478

Query: 479 VQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLI 538
           + V+A DKGTGK Q I+IQ +  L  +++E+MVK+AE NA  DK++RE ++ KN AESL 
Sbjct: 479 LSVTAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLC 538

Query: 539 YSTEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKA 598
           Y  E+ L+E  DKI+E +++ I   I  LR  L + + +   IK   ++L +  M +GK 
Sbjct: 539 YQAEKQLKELKDKISEEKKEKIENLIKKLRQALQNDNYES--IKSLLEELQKALMEIGKE 596

Query: 599 IYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEE 634
           +Y + +  D A++             DDV+D D+ E
Sbjct: 597 VYSSTSTTDPASN------------DDDVIDTDFSE 620


>gnl|CDD|30792 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
           protein turnover, chaperones].
          Length = 579

 Score =  678 bits (1751), Expect = 0.0
 Identities = 360/603 (59%), Positives = 446/603 (73%), Gaps = 28/603 (4%)

Query: 1   MSKVIGIDLGTTNSCVAIMDGKN-VRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAV 59
             K IGIDLGTTNS VA+M G    +VIENAEG R TPS+V F+  GE LVGQ AKRQAV
Sbjct: 4   AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAV 63

Query: 60  TNPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIV 119
            NP NTIF+ KR IGR                      G    +E  GK+Y+P +ISA++
Sbjct: 64  DNPENTIFSIKRKIGRG-------------------SNGLKISVEVDGKKYTPEEISAMI 104

Query: 120 LQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAY 179
           L K+KE AE++LGE V+ AVITVPAYFNDAQRQATKDA RIAGL+VLR+INEPTAAALAY
Sbjct: 105 LTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAY 164

Query: 180 GLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTF 239
           GLDK   +TV+V+D GGGTFDVSLLE+GDGVFEV AT GD  LGG+DFD+ L++++   F
Sbjct: 165 GLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEF 224

Query: 240 KKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQ 299
           K + GIDL+ D  ALQRL+EAAEKAKIELSS +QT INLP I  +      L  +LTRA+
Sbjct: 225 KGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDI----DLLKELTRAK 280

Query: 300 FERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKG 359
           FE L+  L+++T+EP ++ L+DAGL  SDID V+LVGG TR+P +Q+ V++FF K P K 
Sbjct: 281 FEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKS 340

Query: 360 VNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQ 419
           +NPDE VA+GAAIQA VL G+V D+LLLDV PLSLGIETLGGV T II+RN+TIP KKSQ
Sbjct: 341 INPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQ 400

Query: 420 VFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIV 479
            FSTAAD Q+AV+I + QGER+M ADNK LG+F+L GIPPAP+G PQIEV FDIDANGI+
Sbjct: 401 EFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGIL 460

Query: 480 QVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIY 539
            V+A D GTGK Q I+I+AS GLS E+IE+MV+DAE NA +DKK RE VE +N AESLIY
Sbjct: 461 NVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIY 520

Query: 540 STEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAI 599
           S E++L+E   K++E E++ I E+I  L   L     ++ +IK   ++L EV+  L +  
Sbjct: 521 SLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG---EKEEIKAKIEELQEVTQKLAEKK 576

Query: 600 YEA 602
           Y+ 
Sbjct: 577 YQQ 579


>gnl|CDD|35323 KOG0100, KOG0100, KOG0100, Molecular chaperones GRP78/BiP/KAR2,
           HSP70 superfamily [Posttranslational modification,
           protein turnover, chaperones].
          Length = 663

 Score =  645 bits (1666), Expect = 0.0
 Identities = 336/634 (52%), Positives = 444/634 (70%), Gaps = 23/634 (3%)

Query: 1   MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60
           +  VIGIDLGTT SCV +     V +I N +G R TPS V FTD+ ERL+G  AK Q  +
Sbjct: 35  LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTS 93

Query: 61  NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIE-----AQGKQYSPSQI 115
           NP NTIF AKRLIGR+FND +V KD   +PFK+V  K G  +I+      + K ++P +I
Sbjct: 94  NPENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVN-KDGKPYIQVKVGGGETKVFTPEEI 152

Query: 116 SAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175
           SA++L KMKETAE++LG+ V+ AV+TVPAYFNDAQRQATKDAG IAGL+V+RIINEPTAA
Sbjct: 153 SAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAA 212

Query: 176 ALAYGLDKKDA-RTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEH 234
           A+AYGLDKKD  + ++VFD GGGTFDVSLL + +GVFEV ATNGDT LGGEDFD  ++E+
Sbjct: 213 AIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEY 272

Query: 235 ICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMK 294
               +KK++G D+++D  A+Q+L+   EKAK  LSS  Q  I +     +       +  
Sbjct: 273 FIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEI----ESLFDGVDFSET 328

Query: 295 LTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN- 353
           LTRA+FE L   L +KT++P +K L+D+ L  SDIDE+VLVGG TR+PK+QQ ++DFFN 
Sbjct: 329 LTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNG 388

Query: 354 KSPSKGVNPDEVVAMGAAIQAGVLQG--DVKDLLLLDVTPLSLGIETLGGVFTSIIDRNS 411
           K PSKG+NPDE VA GAA+QAGVL G  D  D++LLDV PL+LGIET+GGV T +I RN+
Sbjct: 389 KEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNPLTLGIETVGGVMTKLIPRNT 448

Query: 412 TIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAF 471
            IPTKKSQVFSTA DNQ  V+I++ +GER M  DN LLG+FDL GIPPAP+G PQIEV F
Sbjct: 449 VIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTF 508

Query: 472 DIDANGIVQVSALDKGTGKAQQISIQASGG-LSSEDIEKMVKDAEMNAEMDKKRREAVET 530
           ++DANGI+QVSA DKGTGK ++I+I    G L+ EDIE+MV +AE  AE DKK +E +E 
Sbjct: 509 EVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEA 568

Query: 531 KNHAESLIYSTEQSLREH---GDKIAEAEQKSIRESI-DALRTLLNDADPDESKIKEATQ 586
           +N  ES  YS +  + +    G K+++ ++++I +++ +AL  L ++ D  + + KE  +
Sbjct: 569 RNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKK 628

Query: 587 KLMEVSMNLGKAIYE---AQAKKDAAADTATADT 617
           +L  V   +   +Y       +     DT   D 
Sbjct: 629 ELEAVVQPIISKLYGGAGGAPEPAGEEDTDEKDE 662


>gnl|CDD|35324 KOG0101, KOG0101, KOG0101, Molecular chaperones HSP70/HSC70, HSP70
           superfamily [Posttranslational modification, protein
           turnover, chaperones].
          Length = 620

 Score =  546 bits (1407), Expect = e-156
 Identities = 316/606 (52%), Positives = 416/606 (68%), Gaps = 17/606 (2%)

Query: 1   MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60
            S  IGIDLGTT SCV +     V +I N +G RTTPS+V FTD  ERL+G  AK Q   
Sbjct: 6   ESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDT-ERLIGDAAKNQVAR 64

Query: 61  NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQG----KQYSPSQIS 116
           NP NT+F AKRLIGR F+D  V  D  L PFK++  +GG   I+       K ++P +IS
Sbjct: 65  NPDNTVFDAKRLIGRFFDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEIS 124

Query: 117 AIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176
           ++VL K+KETAE++LG+TV KAV+TVPAYFND+QR ATKDA  IAGL+VLRIINEPTAAA
Sbjct: 125 SMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAALIAGLNVLRIINEPTAAA 184

Query: 177 LAYGLDKK--DARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEH 234
           LAYGLDKK    R V++FD GGGTFDVS+L +  G+FEVKAT GDT LGGEDFD+ LV H
Sbjct: 185 LAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNH 244

Query: 235 ICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMK 294
               FK++ G D+  +  AL+RL+ A E+AK  LSS++Q  I +  +             
Sbjct: 245 FAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSL----YEGIDFYTS 300

Query: 295 LTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN- 353
           +TRA+FE L   L + T+EP +K L+DA L  SDIDEVVLVGG TR+PK+Q+ ++DFFN 
Sbjct: 301 ITRARFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNG 360

Query: 354 KSPSKGVNPDEVVAMGAAIQAGVLQGD----VKDLLLLDVTPLSLGIETLGGVFTSIIDR 409
           K  +K +NPDE VA GAA+QA +L GD    ++DLLL+DV PLSLG+ET GGVFT +I R
Sbjct: 361 KELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPLSLGVETAGGVFTVLIPR 420

Query: 410 NSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEV 469
           N++IPTKK+Q F+T +DNQ  V I++ +GER M  DN LLG+F+L GIPPAP+G PQIEV
Sbjct: 421 NTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 480

Query: 470 AFDIDANGIVQVSALDKGTGKAQQISIQ-ASGGLSSEDIEKMVKDAEMNAEMDKKRREAV 528
            FDIDANGI+ V+A+DK TGK  +I+I    G LS E+IE+MV++AE     D+K+++ V
Sbjct: 481 TFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKV 540

Query: 529 ETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKL 588
             KN  ES  ++ + ++ +   KI E +++ I +  + +   L+     E +  E  QK 
Sbjct: 541 AAKNSLESYAFNMKATVEDEKGKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKE 600

Query: 589 MEVSMN 594
           +E+  N
Sbjct: 601 LELVCN 606


>gnl|CDD|35326 KOG0103, KOG0103, KOG0103, Molecular chaperones HSP105/HSP110/SSE1,
           HSP70 superfamily [Posttranslational modification,
           protein turnover, chaperones].
          Length = 727

 Score =  276 bits (706), Expect = 2e-74
 Identities = 191/632 (30%), Positives = 302/632 (47%), Gaps = 59/632 (9%)

Query: 1   MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60
           MS V+G DLG  N  +A+     + V+ N    R TP++V F  +  R +G  AK Q  T
Sbjct: 1   MS-VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKN-RFIGVAAKNQQTT 58

Query: 61  NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQG----KQYSPSQIS 116
           N  NT+   KRLIGR+F+D  V ++   +P  +V+ K GD  I+ +       ++P Q+ 
Sbjct: 59  NVKNTVSNFKRLIGRKFSDPEVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVL 118

Query: 117 AIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176
           A++L K+K TAE  L   VS  VI VP+YF D+QR+A  DA RIAGL+ LR++N+ TA A
Sbjct: 119 AMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARIAGLNPLRLMNDTTATA 178

Query: 177 LAYGLDKKD-------ARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDS 229
           LAYG+ K D        R V+  D G  ++ VS+     G  +V AT  D  LGG DFD 
Sbjct: 179 LAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDE 238

Query: 230 CLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQ 289
            L++H    FK +  ID++ +  A  RL    EK K  LS+ ++  +N+     +     
Sbjct: 239 ALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKD--- 295

Query: 290 HLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQ 349
            ++ K+ R +FE L   L+++   P  K L DA L   DI  V +VGG++R+P I++ + 
Sbjct: 296 -VSSKIKREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMIS 354

Query: 350 DFFNKSPSKGVNPDEVVAMGAAIQAGVLQGD--VKDLLLLDVTPLSLGIETL-----GGV 402
           DFF K  S+ +N DE VA GAA+Q  +L     V++  + D+ P S+ +  +     GG 
Sbjct: 355 DFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPYSISLRWVKQGEDGGS 414

Query: 403 FTSIIDRNSTIPTKK------SQVFSTAA--DNQSAVSIRIGQGERKMFADNKLLGQFDL 454
            T +  +    P+ K         F+  A     + +     + E+            + 
Sbjct: 415 VTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEF 474

Query: 455 ----VGIPPAPKGTPQIEVAF---DIDANGIVQVSALDKGTGKAQQ-------------- 493
               V +     G   IE A    DI+   + +         K  +              
Sbjct: 475 SKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKV 534

Query: 494 ---ISIQASGGLSSEDIEK-MVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSL-REH 548
              I     G L ++++E  + K+ +M    DK  +E V+ KN  E  +Y     L  ++
Sbjct: 535 DLPIEAYTKGALITDELELYIEKENKM-ILQDKLEKETVDAKNALEEYVYDMRDKLSDKY 593

Query: 549 GDKIAEAEQKSIRESIDALRTLLNDADPDESK 580
            D I +AE++ +++ +      L +   D++K
Sbjct: 594 EDFITDAEREKLKKMLTDTEEWLYEDGEDQTK 625


>gnl|CDD|35327 KOG0104, KOG0104, KOG0104, Molecular chaperones GRP170/SIL1, HSP70
           superfamily [Posttranslational modification, protein
           turnover, chaperones].
          Length = 902

 Score =  217 bits (554), Expect = 8e-57
 Identities = 182/707 (25%), Positives = 306/707 (43%), Gaps = 78/707 (11%)

Query: 2   SKVIGIDLGTTNSCVAIMD-GKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60
             V+ +DLG+    VA++  G  + ++ N E  R TPS+V F   GER+ G+ A   A  
Sbjct: 22  LAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKG-GERIFGEAAASMATR 80

Query: 61  NPSNTIFAAKRLIGRRFNDSTVAK-DASLVPFKIVE--GKGGDAWIEAQGKQYSPSQISA 117
            P +T    K L+G+  +D TV         F++VE   +    +  +  ++YS  ++ A
Sbjct: 81  FPQSTYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLA 140

Query: 118 IVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAAL 177
           ++LQ  K  AE +  + +   VITVP +FN A+R+A   A +IAGL+VL++IN+ TA AL
Sbjct: 141 MILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVAL 200

Query: 178 AYGLDKK-----DARTVIVFDFGGGTFDVSLL--------EMGDGV--FEVKATNGDTFL 222
            YG+ ++       +  I +D G G+   +++        E G      +V     D  L
Sbjct: 201 NYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTL 260

Query: 223 GGEDFDSCLVEHICDTFKKENGI--DLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPF 280
           GG +    L +H+ + F +++    D+  +  A+ +L + AE+ K  LS+ S+    +  
Sbjct: 261 GGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQI-- 318

Query: 281 ISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTR 340
              +        +K+TR +FE L   L ++ VEP    L+ A LS  +I++V+L GG TR
Sbjct: 319 --ESLIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATR 376

Query: 341 MPKIQQSVQDFFNKSP-SKGVNPDEVVAMGAAIQAGVLQGD--VKDLLLLDVTPLSL--- 394
           +PK+Q+++     K    K +N DE   MGA  QA  L     VK   ++D +       
Sbjct: 377 VPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSFKVKPFNVVDASVYPYLVE 436

Query: 395 -----GIETLGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLL 449
                GI  L  V   +  R S  P KK   F++ +D+    +I  G         N  L
Sbjct: 437 FETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFP-FNINYG-----DLGQN--L 488

Query: 450 GQFDLVGIPPAPKGTPQ-------IEVAFDIDANGIVQVSALD-----KGTGKAQQISIQ 497
              +L G+  A K           I+ +F +D +GIV VS ++     +    +      
Sbjct: 489 TTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKST 548

Query: 498 ASGGLSSEDIEKMVKDAEMNAEMDKKRREAVET------KNHAESLIYSTEQSLREHGDK 551
            S   S+ + E+   D+    + ++K  E  E            S    TE+   E    
Sbjct: 549 LSKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKP 608

Query: 552 IAEAEQKS-IRESIDALRTLLNDADPDESKIKEATQKL------------MEVSMNLGKA 598
             + E  + +   +    T  +    +E+ +  A  KL             E + N  +A
Sbjct: 609 TEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEA 668

Query: 599 -IYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKDDEKDKKK 644
            ++E Q K D       A    K  +K  V     + +++D      
Sbjct: 669 FLFELQDKLDDDEYAEVATEEEKKILKKKVSLL-MDWLEEDGSQTPT 714


>gnl|CDD|31275 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis
           [Cell division and chromosome partitioning].
          Length = 342

 Score = 60.2 bits (146), Expect = 2e-09
 Identities = 67/281 (23%), Positives = 114/281 (40%), Gaps = 66/281 (23%)

Query: 2   SKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTN 61
           S  IGIDLGT N+ V +     V            PS+V    EG+              
Sbjct: 6   SNDIGIDLGTANTLVYVKGKGIVL---------NEPSVVAIESEGK-------------- 42

Query: 62  PSNTIFA----AKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISA 117
            +  + A    AK+++GR     T     ++ P K              G          
Sbjct: 43  -TKVVLAVGEEAKQMLGR-----TPGNIVAIRPMK-------------DGVIADFEVTEL 83

Query: 118 IVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAAL 177
           ++   +K+  ++       + VI VP+   D +R+A K+A   AG   + +I EP AAA+
Sbjct: 84  MLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAI 143

Query: 178 AYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTF-LGGEDFDSCLVEHIC 236
             GL   +    +V D GGGT +V+++ +G  V      +  +  +GG+  D  ++ ++ 
Sbjct: 144 GAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIV------SSSSVRVGGDKMDEAIIVYV- 196

Query: 237 DTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEIN 277
              +K+  + + + T         AEK KIE+ S    E +
Sbjct: 197 ---RKKYNLLIGERT---------AEKIKIEIGSAYPEEED 225


>gnl|CDD|34429 COG4820, EutJ, Ethanolamine utilization protein, possible
           chaperonin [Amino acid transport and metabolism].
          Length = 277

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 18/131 (13%)

Query: 119 VLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALA 178
           +++++K+T E  LG   + A   +P        + + +    AGL+VL +++EPTAA  A
Sbjct: 77  IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAA--A 134

Query: 179 YGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT 238
             L   D     V D GGGT  +S+++ G  ++      G T             H+   
Sbjct: 135 DVLQLDDG---GVVDIGGGTTGISIVKKGKVIYSADEPTGGT-------------HMTLV 178

Query: 239 FKKENGIDLKQ 249
                GI L++
Sbjct: 179 LAGNYGISLEE 189


>gnl|CDD|31190 COG0849, FtsA, Actin-like ATPase involved in cell division [Cell
           division and chromosome partitioning].
          Length = 418

 Score = 38.6 bits (90), Expect = 0.005
 Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 32/198 (16%)

Query: 161 AGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDT 220
           AGL V  I+ EP A+ALA   + +    V + D GGGT D+++ + G   +      G  
Sbjct: 177 AGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRY-----TGVI 231

Query: 221 FLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQT----EI 276
            +GG+     +               LK          E AE+ KI+  S   +    E 
Sbjct: 232 PVGGDHVTKDI------------AKGLKTPF-------EEAERIKIKYGSALISLADDEE 272

Query: 277 NLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVG 336
            +   S  S   + +    TR++   ++   +++ +E  K  L+ +GL       VVL G
Sbjct: 273 TIEVPSVGSDIPRQV----TRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTG 328

Query: 337 GMTRMPKIQQSVQDFFNK 354
           G  ++P I +  +  F +
Sbjct: 329 GGAQLPGIVELAERIFGR 346


>gnl|CDD|31268 COG1070, XylB, Sugar (pentulose and hexulose) kinases
          [Carbohydrate transport and metabolism].
          Length = 502

 Score = 33.8 bits (77), Expect = 0.13
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 1  MSKVIGIDLGTTNSCVAIMDGKNVRVIE 28
          M  V+GID+GTT+    + D     V+ 
Sbjct: 3  MKYVLGIDIGTTSVKAVLFDEDGGEVVA 30



 Score = 32.7 bits (74), Expect = 0.31
 Identities = 25/114 (21%), Positives = 36/114 (31%), Gaps = 12/114 (10%)

Query: 277 NLPFISANSAGAQ-HLNMKLTRAQFERL----VNHLIQKTVEPCKKCLQDAGLSPSDIDE 331
             P     + G    L +  TRA   R     V   +   +E  ++              
Sbjct: 351 RGPHADPAARGGFVGLTLPHTRAHLARAVLEGVAFALADGLEALEEL------GGKPPSR 404

Query: 332 VVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLL 385
           V +VGG  R P   Q + D     P      +E  A+G A  A    G + D  
Sbjct: 405 VRVVGGGARSPLWLQILADALGL-PVVVPEVEEAGALGGAALAAAALGGIYDSA 457


>gnl|CDD|145248 pfam01968, Hydantoinase_A, Hydantoinase/oxoprolinase.  This family
           includes the enzymes hydantoinase and oxoprolinase
           EC:3.5.2.9. Both reactions involve the hydrolysis of
           5-membered rings via hydrolysis of their internal imide
           bonds.
          Length = 285

 Score = 33.4 bits (77), Expect = 0.21
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 16/103 (15%)

Query: 117 AIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLD------VLRIIN 170
           A +   M+   E      + +  I  P Y         +  G +  ++      V  I++
Sbjct: 9   AYLAPIMRRYLEGVEDA-LKERGIKAPLYV-------MQSDGGLMSIEEARRKPVETILS 60

Query: 171 EPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEV 213
            P A  +         +  IV D GG + DVSL+   DG  E+
Sbjct: 61  GPAAGVVGAAYTLAGLKNAIVVDMGGTSTDVSLII--DGEPEI 101


>gnl|CDD|30494 COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta
           subunit [Amino acid transport and metabolism / Secondary
           metabolites biosynthesis, transport, and catabolism].
          Length = 674

 Score = 33.5 bits (76), Expect = 0.21
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 162 GLDVLRIINEPTAAALAYG-LDKKDARTVIVFDFGGGTFDVSLLEMG 207
              V  I++ P A  +    L    A   IVFD GG + DV+L+  G
Sbjct: 252 EKPVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTSTDVALIIDG 298



 Score = 29.2 bits (65), Expect = 3.6
 Identities = 43/193 (22%), Positives = 65/193 (33%), Gaps = 37/193 (19%)

Query: 1   MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPS-MVGFTDEGERLVGQPAKRQAV 59
           M   IGID+G T +   ++D     +        TTP    G  + G RL  +  +   V
Sbjct: 1   MMLRIGIDVGGTFTDAVLLDEDGGVLATIK--VLTTPDLPSGIVNAGIRLALELLEGSEV 58

Query: 60  -------TNPSNTI---------------FAAKRLIGR----RFNDSTVAKDASLVPFKI 93
                  T  +N +               F     IGR    R     + K   LVP   
Sbjct: 59  DLVVHGTTLATNALLERKGLRTALITTKGFVDLIEIGRQNRPRLYPLYIKKPKPLVPRVR 118

Query: 94  VEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSK-AVITVPAYFNDAQRQ 152
           V   GG   + A+G+   P     +     +E A +     V   AV ++ +Y N     
Sbjct: 119 V--FGGHERVGAEGEVIKPLDEEEV-----REAAAALKAAGVEAIAVSSLFSYRNPEHEL 171

Query: 153 ATKDAGRIAGLDV 165
              +  R  G D+
Sbjct: 172 RVAEIIREIGPDI 184


>gnl|CDD|31267 COG1069, AraB, Ribulose kinase [Energy production and conversion].
          Length = 544

 Score = 31.8 bits (72), Expect = 0.57
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 318 CLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVL 377
             +D G++   ID +   GG+ + P + Q   D   + P      D+ V +GAA+ A V 
Sbjct: 424 TFEDQGIA---IDTLFASGGIRKNPLLMQLYADVTGR-PVVIPASDQAVLLGAAMFAAVA 479

Query: 378 QGDVKDL 384
            G   DL
Sbjct: 480 AGVHPDL 486


>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
           includes archaeal L12p, the protein that is functionally
           equivalent to L7/L12 in bacteria and the P1 and P2
           proteins in eukaryotes. L12p is homologous to P1 and P2
           but is not homologous to bacterial L7/L12. It is located
           in the L12 stalk, with proteins L10, L11, and 23S rRNA.
           L12p is the only protein in the ribosome to occur as
           multimers, always appearing as sets of dimers. Recent
           data indicate that most archaeal species contain six
           copies of L12p (three homodimers), while eukaryotes have
           four copies (two heterodimers), and bacteria may have
           four or six copies (two or three homodimers), depending
           on the species. The organization of proteins within the
           stalk has been characterized primarily in bacteria,
           where L7/L12 forms either two or three homodimers and
           each homodimer binds to the extended C-terminal helix of
           L10. L7/L12 is attached to the ribosome through L10 and
           is the only ribosomal protein that does not directly
           interact with rRNA. Archaeal L12p is believed to
           function in a similar fashion. However, hybrid ribosomes
           containing the large subunit from E. coli with an
           archaeal stalk are able to bind archaeal and eukaryotic
           elongation factors but not bacterial elongation factors.
           In several mesophilic and thermophilic archaeal species,
           the binding of 23S rRNA to protein L11 and to the
           L10/L12p pentameric complex was found to be
           temperature-dependent and cooperative..
          Length = 106

 Score = 31.3 bits (71), Expect = 0.83
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 565 DALRTLLNDA--DPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTD 622
           + L+ +L  A  + DE+++K     L EV  N+ +AI +A     AAA  A A   A+  
Sbjct: 20  ENLKKVLEAAGIEVDEARVKALVAALEEV--NIDEAIKKAAVAAAAAAPAAAAAAAAEEK 77

Query: 623 VKDDVVDADYEEIKDDE 639
            ++   +   EE K++E
Sbjct: 78  AEEKEEEKKKEEEKEEE 94


>gnl|CDD|29417 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III
           (KASIII) initiates the elongation in type II fatty acid
           synthase systems. It is found in bacteria and plants.
           Elongation of fatty acids in the type II systems occurs
           by Claisen condensation of malonyl-acyl carrier protein
           (ACP) with acyl-ACP. KASIII initiates this process by
           specifically using acetyl-CoA over acyl-CoA..
          Length = 320

 Score = 30.5 bits (69), Expect = 1.4
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 312 VEPCKKCLQDAGLSPSDIDEVVLVGGMTR 340
           VE  KK L+DAG+   DID +++V   T 
Sbjct: 55  VEAAKKALEDAGIDADDID-LIIVATSTP 82


>gnl|CDD|29418 cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific
           polyketide synthases (PKS) and related enzymes, also
           called type III PKSs. PKS generate an array of different
           products, dependent on the nature of the starter
           molecule. They share a common chemical strategy, after
           the starter molecule is loaded onto the active site
           cysteine, a carboxylative condensation reation extends
           the polyketide chain. Plant-specific PKS are dimeric
           iterative PKSs, using coenzyme A esters to deliver
           substrate to the active site, but they differ in the
           choice of starter molecule and the number of
           condensation reactions..
          Length = 361

 Score = 30.6 bits (69), Expect = 1.6
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 16/86 (18%)

Query: 255 QRLKEAAEKAKIE-----LSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQ 309
           ++LK    K  IE     L    +T    P +S +      + ++  R   E        
Sbjct: 39  EKLKRLCAKTGIETRYLVLPGGEETYAPRPEMSPSLDERNDIALEEARELAEEAA----- 93

Query: 310 KTVEPCKKCLQDAGLSPSDIDEVVLV 335
                 +  L +AGL PSDID +V+ 
Sbjct: 94  ------RGALDEAGLRPSDIDHLVVN 113


>gnl|CDD|30680 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein].
          Length = 323

 Score = 30.2 bits (68), Expect = 2.0
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 11/127 (8%)

Query: 269 SSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSD 328
           S  SQ ++       ++   +     L       +    ++   +  ++ L+ AGL+P D
Sbjct: 183 SDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVFKFAVRAMPKAIEEVLEKAGLTPED 242

Query: 329 IDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGV-NPDEVVAMGAA-----IQAGVLQGDVK 382
           ID  V      R   I +++         K V   D+     AA     +   + +G +K
Sbjct: 243 IDWFVPHQANLR---IIEAIAKKLGIPEEKVVVTVDKYGNTSAASIPLALDEALREGRIK 299

Query: 383 --DLLLL 387
             DL+LL
Sbjct: 300 PGDLVLL 306



 Score = 29.4 bits (66), Expect = 3.2
 Identities = 12/23 (52%), Positives = 18/23 (78%)

Query: 312 VEPCKKCLQDAGLSPSDIDEVVL 334
           VE  +K L+DAG+SP DID +++
Sbjct: 57  VEAARKALEDAGISPDDIDLIIV 79


>gnl|CDD|144616 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase,
           family 1. 
          Length = 211

 Score = 29.9 bits (68), Expect = 2.1
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 9/69 (13%)

Query: 567 LRTLLNDADPDE-------SKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTA 619
           L  LLN+ D           K KE T+ L       GKA+  ++  ++A    A    T 
Sbjct: 96  LHALLNNEDRINIELGSELKKFKEFTKGLD--PEERGKALENSEEIREAHNSFARQGQTE 153

Query: 620 KTDVKDDVV 628
             D +DDV 
Sbjct: 154 APDAEDDVD 162


>gnl|CDD|145766 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal
           domain.  This domain adopts a ribonuclease H-like fold
           and is structurally related to the N-terminal domain.
          Length = 193

 Score = 30.0 bits (68), Expect = 2.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 318 CLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGV 376
            L+      + ID ++  GG +R P + Q + D   + P +   P E  A+GAA+ A V
Sbjct: 134 ILEALAELGAPIDRIIASGGGSRNPLLLQLLADALGR-PVEVPEPAEATALGAALLAAV 191


>gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
            (vWA) domain [General function prediction only].
          Length = 4600

 Score = 30.1 bits (67), Expect = 2.2
 Identities = 24/143 (16%), Positives = 62/143 (43%), Gaps = 12/143 (8%)

Query: 505  EDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESI 564
            +D+E++  + +   + D    EA E ++    +    +  + E+ +  +E E + + E +
Sbjct: 3835 DDLEELANEEDTANQSDLDESEARELESDMNGVT--KDSVVSENENSDSEEENQDLDEEV 3892

Query: 565  DALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTDVK 624
            + +   L+++  ++   +   + L+E            Q   + +A    +D  +K D  
Sbjct: 3893 NDIPEDLSNSLNEKLWDEPNEEDLLETE----------QKSNEQSAANNESDLVSKEDDN 3942

Query: 625  DDVVDADYEEIKDDEKDKKKLSI 647
              + D D +E +D+E+    + I
Sbjct: 3943 KALEDKDRQEKEDEEEMSDDVGI 3965


>gnl|CDD|37283 KOG2072, KOG2072, KOG2072, Translation initiation factor 3, subunit
           a (eIF-3a) [Translation, ribosomal structure and
           biogenesis].
          Length = 988

 Score = 30.0 bits (67), Expect = 2.3
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 505 EDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESI 564
           ++++K  K       + +KR+E +E +N       + EQ+  +   +  EAE+K + E  
Sbjct: 557 KNVDKEHKRILARKSLIEKRKEDLEKQNVEREAEEAQEQAKEQR--QAREAEEKRLIEEK 614

Query: 565 ---DALRTLLNDADPDESKIKEATQKLM--EVSMNLGKAIYEAQAKK 606
              +A R L       + ++KE  ++L   EV    GK       +K
Sbjct: 615 KEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEK 661


>gnl|CDD|29978 cd00454, Trunc_globin, Truncated hemoglobins (trHbs) are a family
           of oxygen-binding heme proteins found in cyanobacteria,
           eubacteria, unicellular eukaryotes, and plants. The
           truncated hemoglobins have a characteristic two-over-two
           alpha helical folding pattern that is distinct from the
           three-over-three pattern found in other globins.  A
           subset of these have been demonstrated to form
           homodimers..
          Length = 116

 Score = 29.8 bits (67), Expect = 2.4
 Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 8/51 (15%)

Query: 290 HLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTR 340
           HL   +T  +F+  +  L           L + G+     D ++       
Sbjct: 68  HLPFPITEEEFDAWLELLRD--------ALDELGVPAELADALLARAERIA 110


>gnl|CDD|144572 pfam01031, Dynamin_M, Dynamin central region.  This region lies
           between the GTPase domain, see pfam00350, and the
           pleckstrin homology (PH) domain, see pfam00169.
          Length = 295

 Score = 29.8 bits (68), Expect = 2.4
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 16/65 (24%)

Query: 300 FERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEV------VLVGGMTRMP----KIQQSVQ 349
           FE LV   I++  EP  KCL          DE+      +    ++R P     I++ V+
Sbjct: 194 FEVLVKQQIKRLEEPALKCLDLV------YDELRKIFLKIASKELSRFPNLKEAIKEVVE 247

Query: 350 DFFNK 354
           D   +
Sbjct: 248 DILRE 252


>gnl|CDD|37831 KOG2620, KOG2620, KOG2620, Prohibitins and stomatins of the PID
           superfamily [Energy production and conversion].
          Length = 301

 Score = 29.9 bits (67), Expect = 2.5
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 564 IDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAK 620
            + LR  + D +P  S +K A     E       AI E++ ++ A  + A  +  +K
Sbjct: 143 YECLRYEIRDIEPPPS-VKRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESK 198


>gnl|CDD|37652 KOG2441, KOG2441, KOG2441, mRNA splicing factor/probable chromatin
           binding snw family nuclear protein [RNA processing and
           modification, Chromatin structure and dynamics].
          Length = 506

 Score = 29.7 bits (66), Expect = 2.9
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 521 DKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESK 580
           D+K RE V  +   E  +   E+   E   K+ E  QK+ RE     +T   + +  E++
Sbjct: 291 DRKAREEVRMRAQLERKM--AEKEKEEKEQKLRELAQKA-REERGGPQTGAIEKEDREAR 347

Query: 581 ----IKEATQKLMEVSMNLGKAIYEAQAK 605
               I+   +K  E   NL +A  + ++K
Sbjct: 348 TREEIRRDRRKEREKDRNLSRAAPDKRSK 376


>gnl|CDD|33230 COG3424, BcsA, Predicted naringenin-chalcone synthase [Secondary
           metabolites biosynthesis, transport, and catabolism].
          Length = 356

 Score = 29.5 bits (66), Expect = 2.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 312 VEPCKKCLQDAGLSPSDIDEVVLV 335
           V+  ++ L  + L P DID VV V
Sbjct: 81  VDALRRALDGSPLRPEDIDAVVTV 104


>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled
           Receptor Kinase 4-like Protein Serine/Threonine Kinases.
            Serine/Threonine Kinases (STKs), G protein-coupled
           Receptor Kinase (GRK) subfamily, GRK4-like group,
           catalytic (c) domain. STKs catalyze the transfer of the
           gamma-phosphoryl group from ATP to serine/threonine
           residues on protein substrates. The GRK subfamily is
           part of a larger superfamily that includes the catalytic
           domains of other protein STKs, protein tyrosine kinases,
           RIO kinases, aminoglycoside phosphotransferase, choline
           kinase, and phosphoinositide 3-kinase. GRKs
           phosphorylate and regulate G protein-coupled receptors
           (GPCRs), the largest superfamily of cell surface
           receptors which regulate some part of nearly all
           physiological functions. Phosphorylated GPCRs bind to
           arrestins, which prevents further G protein signaling
           despite the presence of activating ligand. There are
           seven types of GRKs, named GRK1 to GRK7. Members of the
           GRK4-like group include GRK4, GRK5, GRK6, and similar
           GRKs. GRKs in this group contain an N-terminal RGS
           homology (RH) domain and a catalytic domain, but lack a
           G protein betagamma-subunit binding domain. They are
           localized to the plasma membrane through
           post-translational lipid modification or direct binding
           to PIP2.
          Length = 285

 Score = 29.4 bits (66), Expect = 3.3
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 165 VLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFE 212
           +L  +N     +LAY  + KDA  +++    GG     +  MG+  F+
Sbjct: 53  ILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFD 100


>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein
           Serine/Threonine Kinase, G protein-coupled Receptor
           Kinase 6.  Serine/Threonine Kinases (STKs), G
           protein-coupled Receptor Kinase (GRK) subfamily, GRK6
           isoform, catalytic (c) domain. STKs catalyze the
           transfer of the gamma-phosphoryl group from ATP to
           serine/threonine residues on protein substrates. The GRK
           subfamily is part of a larger superfamily that includes
           the catalytic domains of other protein STKs, protein
           tyrosine kinases, RIO kinases, aminoglycoside
           phosphotransferase, choline kinase, and phosphoinositide
           3-kinase. GRKs phosphorylate and regulate G
           protein-coupled receptors (GPCRs), the largest
           superfamily of cell surface receptors which regulate
           some part of nearly all physiological functions.
           Phosphorylated GPCRs bind to arrestins, which prevents
           further G protein signaling despite the presence of
           activating ligand. There are seven types of GRKs, named
           GRK1 to GRK7. GRK6 is widely expressed in many tissues.
           t is expressed as multiple splice variants with
           different domain architectures. It is
           post-translationally palmitoylated and localized in the
           membrane. GRK6 plays important roles in the regulation
           of dopamine, M3 muscarinic, opioid, and chemokine
           receptor signaling. It also plays maladaptive roles in
           addiction and Parkinson's disease. GRK6-deficient mice
           exhibit altered dopamine receptor regulation, decreased
           lymphocyte chemotaxis, and increased acute inflammation
           and neutrophil chemotaxis.
          Length = 285

 Score = 29.2 bits (65), Expect = 3.6
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 165 VLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFE 212
           +L  +N     +LAY  + KDA  +++    GG     +  MG+  FE
Sbjct: 53  ILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFE 100


>gnl|CDD|119433 cd05173, PI3Kc_IA_beta, Phosphoinositide 3-kinase (PI3K), class IA,
           beta isoform, catalytic domain; The PI3K catalytic
           domain family is part of a larger superfamily that
           includes the catalytic domains of other kinases such as
           the typical serine/threonine/tyrosine protein kinases
           (PKs), aminoglycoside phosphotransferase, choline
           kinase, and RIO kinases. PI3Ks catalyze the transfer of
           the gamma-phosphoryl group from ATP to the 3-hydroxyl of
           the inositol ring of D-myo-phosphatidylinositol (PtdIns)
           or its derivatives. PI3Ks can be divided into three main
           classes (I, II, and III), defined by their substrate
           specificity, regulation, and domain structure. Class I
           PI3Ks are the only enzymes capable of converting
           PtdIns(4,5)P2 to the critical second messenger
           PtdIns(3,4,5)P3. Class I enzymes are heterodimers and
           exist in multiple isoforms consisting of one catalytic
           subunit (out of four isoforms) and one of several
           regulatory subunits. They are further classified into
           class IA (alpha, beta and delta) and IB (gamma). Class
           IA enzymes contain an N-terminal p85 binding domain, a
           Ras binding domain, a lipid binding C2 domain, a PI3K
           homology domain of unknown function, and a C-terminal
           ATP-binding cataytic domain. They associate with a
           regulatory subunit of the p85 family and are activated
           by tyrosine kinase receptors. In addition, PI3Kbeta can
           also be activated by G-protein-coupled receptors.
           Deletion of PI3Kbeta in mice results in early lethality
           at around day three of development. PI3Kbeta plays an
           important role in regulating sustained integrin
           activation and stable platelet agrregation, especially
           under conditions of high shear stress..
          Length = 362

 Score = 29.2 bits (65), Expect = 3.7
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 22/73 (30%)

Query: 242 ENGIDLKQDTLALQRL-------KEAAEKAK---------------IELSSTSQTEINLP 279
           +NG DL+QD L LQ L       KEA    +               IE+ S+++T  ++ 
Sbjct: 100 KNGDDLRQDMLTLQILRLMDTLWKEAGLDLRIVPYGCLATGDRSGLIEVVSSAETIADIQ 159

Query: 280 FISANSAGAQHLN 292
             S+N A A   N
Sbjct: 160 LNSSNVAAAAAFN 172


>gnl|CDD|147368 pfam05153, DUF706, Family of unknown function (DUF706).  Family of
           uncharacterized eukaryotic function. Some members have a
           described putative function, but a common theme is not
           evident.
          Length = 248

 Score = 29.2 bits (66), Expect = 4.2
 Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 559 SIRESIDALRTLLNDADPD--ESKIKEATQ 586
           +I E+++ L TL++++DPD    +I+   Q
Sbjct: 36  TIWEALELLNTLVDESDPDTDLPQIQHLLQ 65


>gnl|CDD|29416 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
           carrier protein (SCP)-x isoform and related proteins;
           SCP-2  has multiple roles in intracellular lipid
           circulation and metabolism. The N-terminal presequence
           in the SCP-x isoform represents a peroxisomal
           3-ketacyl-Coa thiolase specific for branched-chain acyl
           CoAs, which is proteolytically cleaved from the sterol
           carrier protein..
          Length = 375

 Score = 29.1 bits (65), Expect = 4.2
 Identities = 21/68 (30%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 312 VEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAA 371
            E  +  L DAGL P+DID VV VG                      G     V A GA+
Sbjct: 21  AEAARAALDDAGLEPADIDAVV-VGNAAGGRFQSFPGALIAEYLGLLGKPATRVEAAGAS 79

Query: 372 IQAGVLQG 379
             A V   
Sbjct: 80  GSAAVRAA 87


>gnl|CDD|36599 KOG1385, KOG1385, KOG1385, Nucleoside phosphatase [Nucleotide
           transport and metabolism].
          Length = 453

 Score = 28.8 bits (64), Expect = 5.3
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 180 GLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEV 213
            L     RTV V D GGG+  ++ L   +   E 
Sbjct: 206 TLGAPGHRTVGVVDLGGGSTQITFLPTFEDTLEA 239


>gnl|CDD|147564 pfam05451, Phytoreo_Pns, Phytoreovirus nonstructural protein
           Pns10/11.  This family consists of Phytoreovirus
           nonstructural proteins Pns10 and Pns11. Genome segment
           S11 of rice gall dwarf virus (RGDV), a member of
           Phytoreovirus encodes a putative protein of 40 kDa that
           exhibits approximately 37% homology at the amino acid
           level to the nonstructural proteins Pns10 of rice dwarf
           and wound tumour viruses, which are other members of
           Phytoreovirus.
          Length = 344

 Score = 28.6 bits (64), Expect = 5.8
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 540 STEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEAT-QKLMEVSMNLGKA 598
            TE+ +R H + +   E   I    DA++ L    D   + I EA   KL   +      
Sbjct: 4   DTERFVRLHVELLCAHEGHEIISKFDAIKKLNLTQDGGANNISEAAFSKLRNFARKSEAY 63

Query: 599 IYEAQAKKDAAADTATA 615
           I    A++D   DT  A
Sbjct: 64  IASDLAERDLTRDTHKA 80


>gnl|CDD|30900 COG0554, GlpK, Glycerol kinase [Energy production and conversion].
          Length = 499

 Score = 28.6 bits (64), Expect = 5.9
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 10/87 (11%)

Query: 305 NHLIQKTVEPCKKCLQDAGL-------SPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPS 357
            H+ + T+E      Q   +       S   +  + + GG +R   + Q   D       
Sbjct: 374 AHIARATLESI--AYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADILGVPVE 431

Query: 358 KGVNPDEVVAMGAAIQAGVLQGDVKDL 384
           + V   E  A+GAA  AG+  G  KDL
Sbjct: 432 RPVV-LETTALGAAYLAGLAVGFWKDL 457


>gnl|CDD|109812 pfam00769, ERM, Ezrin/radixin/moesin family.  This family of
           proteins contain a band 4.1 domain (pfam00373), at their
           amino terminus. This family represents the rest of these
           proteins.
          Length = 244

 Score = 28.2 bits (63), Expect = 6.8
 Identities = 19/134 (14%), Positives = 51/134 (38%), Gaps = 6/134 (4%)

Query: 519 EMDKKRREAVETKNHAESLIYSTEQSLREHGDKIA--EAEQKSIRESIDALRTLLNDADP 576
           E +++++E  E     E  +   ++ L E+ +     E + K   E    L    ++ + 
Sbjct: 2   EAEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEE 61

Query: 577 DESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIK 636
           +  +++E      E    L   + EA A+     +           ++ ++ +A     +
Sbjct: 62  ENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREA----QE 117

Query: 637 DDEKDKKKLSIFLS 650
             E+ +++L    +
Sbjct: 118 AHERARQELLEAAA 131


>gnl|CDD|34366 COG4752, COG4752, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 190

 Score = 28.4 bits (63), Expect = 7.0
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 17/118 (14%)

Query: 102 WIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIA 161
           W+  +G++Y+P++   + L ++  T E  + E + K     P     + R        I+
Sbjct: 66  WLSGEGRKYNPTRYEIVQLVRLAYTLEEVI-EDIEKEEGRRPLIVGTSARTYPNT---IS 121

Query: 162 GLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGD 219
              +   I E            +D   +I+F  G G  D  L+   D + E      D
Sbjct: 122 YSWLRNEIQE------------RDKPWLILFGTGWGLPD-ELMNTSDYILEPIRAASD 166


>gnl|CDD|36720 KOG1507, KOG1507, KOG1507, Nucleosome assembly protein NAP-1
           [Chromatin structure and dynamics, Cell cycle control,
           cell division, chromosome partitioning].
          Length = 358

 Score = 28.0 bits (62), Expect = 8.1
 Identities = 21/157 (13%), Positives = 57/157 (36%), Gaps = 2/157 (1%)

Query: 488 TGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLRE 547
              +  +S   +   +     +   DA   +  D+   +   T     + +     SL  
Sbjct: 4   DKDSGNMSDAPTPHNTPSSASESPADAPSGSLDDESSSDEESTPKLLSA-LDGRLASLAG 62

Query: 548 HGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKD 607
               + E    +++  + AL+ L  + D  E+K +E   +L      L + +++ + ++ 
Sbjct: 63  LLSDMVENLPPAVKNRVLALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFD-KRREI 121

Query: 608 AAADTATADTTAKTDVKDDVVDADYEEIKDDEKDKKK 644
              +    +   +   + +      E+ ++ EK+  K
Sbjct: 122 INGEVEPTEEEIEWPEEIEDEGNLAEDTEEAEKEDPK 158


>gnl|CDD|32252 COG2069, CdhD, CO dehydrogenase/acetyl-CoA synthase delta subunit
           (corrinoid Fe-S protein) [Energy production and
           conversion].
          Length = 403

 Score = 28.0 bits (62), Expect = 8.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 161 AGLDVLRIINEPTAAALAYGLD 182
            GL   RI+ +PT  AL YG++
Sbjct: 275 RGLPRDRIVMDPTTCALGYGIE 296


>gnl|CDD|147033 pfam04675, DNA_ligase_A_N, DNA ligase N terminus.  This region is
           found in many but not all ATP-dependent DNA ligase
           enzymes (EC:6.5.1.1). It is thought to be involved in
           DNA binding and in catalysis. In human DNA ligase I, and
           in Saccharomyces cerevisiae, this region was necessary
           for catalysis, and separated from the amino terminus by
           targeting elements. In vaccinia virus this region was
           not essential for catalysis, but deletion decreases the
           affinity for nicked DNA and decreased the rate of strand
           joining at a step subsequent to enzyme-adenylate
           formation.
          Length = 177

 Score = 28.0 bits (63), Expect = 8.5
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 11/85 (12%)

Query: 501 GLSSEDIEKMVKD----AEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAE 556
           GLS + IE++ K      E+  E+ KKR++ +        L   T Q + E  DKIA+  
Sbjct: 74  GLSEDSIEELYKKVGDLGEVAEELLKKRKQTLFKP---PPL---TVQEVYETLDKIAKLS 127

Query: 557 QKSIRES-IDALRTLLNDADPDESK 580
            K  ++  ID L+ LL+ A P E+K
Sbjct: 128 GKGSQDEKIDLLKKLLSRATPLEAK 152


>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein
           Serine/Threonine Kinase, G protein-coupled Receptor
           Kinase 5.  Serine/Threonine Kinases (STKs), G
           protein-coupled Receptor Kinase (GRK) subfamily, GRK5
           isoform, catalytic (c) domain. STKs catalyze the
           transfer of the gamma-phosphoryl group from ATP to
           serine/threonine residues on protein substrates. The GRK
           subfamily is part of a larger superfamily that includes
           the catalytic domains of other protein STKs, protein
           tyrosine kinases, RIO kinases, aminoglycoside
           phosphotransferase, choline kinase, and phosphoinositide
           3-kinase. GRKs phosphorylate and regulate G
           protein-coupled receptors (GPCRs), the largest
           superfamily of cell surface receptors which regulate
           some part of nearly all physiological functions.
           Phosphorylated GPCRs bind to arrestins, which prevents
           further G protein signaling despite the presence of
           activating ligand. There are seven types of GRKs, named
           GRK1 to GRK7. GRK5 is widely expressed in many tissues.
           It associates with the membrane though an N-terminal
           PIP2 binding domain and also binds phospholipids via its
           C-terminus. GRK5 deficiency is associated with early
           Alzheimer's disease in humans and mouse models. GRK5
           also plays a crucial role in the pathogenesis of
           sporadic Parkinson's disease. It participates in the
           regulation and desensitization of PDGFRbeta, a receptor
           tyrosine kinase involved in a variety of downstream
           cellular effects including cell growth, chemotaxis,
           apoptosis, and angiogenesis. GRK5 also regulates
           Toll-like receptor 4, which is involved in innate and
           adaptive immunity.
          Length = 285

 Score = 28.0 bits (62), Expect = 9.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 165 VLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFE 212
           +L  +N      LAY  + KDA  +++    GG     +  MG+  FE
Sbjct: 53  ILEKVNSQFVVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFE 100


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.313    0.130    0.352 

Gapped
Lambda     K      H
   0.267   0.0573    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,079,833
Number of extensions: 369374
Number of successful extensions: 1073
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1027
Number of HSP's successfully gapped: 81
Length of query: 652
Length of database: 6,263,737
Length adjustment: 100
Effective length of query: 552
Effective length of database: 4,102,837
Effective search space: 2264766024
Effective search space used: 2264766024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.6 bits)