RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|255764494|ref|YP_003065050.2| molecular chaperone DnaK [Candidatus Liberibacter asiaticus str. psy62] (652 letters) >gnl|CDD|143803 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 Score = 952 bits (2462), Expect = 0.0 Identities = 395/603 (65%), Positives = 484/603 (80%), Gaps = 10/603 (1%) Query: 4 VIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNPS 63 VIGIDLGTTNSCVA+M+G VI N EG RTTPS+V FT + ERLVGQ AKRQAVTNP Sbjct: 1 VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPK-ERLVGQAAKRQAVTNPK 59 Query: 64 NTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEA--QGKQYSPSQISAIVLQ 121 NT+F+ KRLIGR+F+D V +D VP+K+V+ GDA +E G+ ++P QISA+VLQ Sbjct: 60 NTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQ 119 Query: 122 KMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGL 181 K+KETAE++LG+ V+ AVITVPAYFNDAQRQATKDAGRIAGL+VLRIINEPTAAALAYGL Sbjct: 120 KLKETAEAYLGKPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGL 179 Query: 182 DKKDA-RTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK 240 DKKD R V+VFD GGGTFDVS+LE+GDGVFEV ATNGDT LGGEDFD+ LV+H + FK Sbjct: 180 DKKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEFK 239 Query: 241 KENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF 300 K+ GIDL +D ALQRL+EAAEKAKIELSS +QTEINLPFI+A + G + ++ LTRA+F Sbjct: 240 KKYGIDLSKDPRALQRLREAAEKAKIELSS-NQTEINLPFITAMADG-KDVSGTLTRAKF 297 Query: 301 ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGV 360 E L L ++T+EP +K L+DA LS S+IDEVVLVGG TR+P +Q+ V++FF K PSK V Sbjct: 298 EELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKTV 357 Query: 361 NPDEVVAMGAAIQAGVLQG--DVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKS 418 NPDE VA+GAA+QAGVL G DVKD+LLLDVTPLSLGIETLGGV T +I RN+TIPTKKS Sbjct: 358 NPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKS 417 Query: 419 QVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGI 478 Q+FSTAADNQ+AV I++ QGER+M DNKLLG F+L GIPPAP+G PQIEV FDIDANGI Sbjct: 418 QIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGI 477 Query: 479 VQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLI 538 + VSA DKGTGK Q+I+I S GLS ++IE+MVKDAE A DKKR+E +E KN AE + Sbjct: 478 LTVSAKDKGTGKEQKITITNSSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYV 537 Query: 539 YSTEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKA 598 YS E+SL+E GDK+ EA++K + E+I+ L+ L D +E I+ T++L +V +G+ Sbjct: 538 YSLEKSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDKEE--IEAKTEELQKVVQPIGER 595 Query: 599 IYE 601 +Y+ Sbjct: 596 MYQ 598 >gnl|CDD|35325 KOG0102, KOG0102, KOG0102, Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]. Length = 640 Score = 836 bits (2162), Expect = 0.0 Identities = 409/608 (67%), Positives = 488/608 (80%), Gaps = 1/608 (0%) Query: 3 KVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTNP 62 KVIGIDLGTTNSCVA+M+GK ++IENAEG RTTPS+V FT +GERLVG PAKRQAVTNP Sbjct: 28 KVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNP 87 Query: 63 SNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVLQK 122 NT FA KRLIGRRF+D V KD VP+KIV+ GDAW+EA+GKQYSPSQI A VL K Sbjct: 88 ENTFFATKRLIGRRFDDPEVQKDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMK 147 Query: 123 MKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLD 182 MKETAE++LG+ V AVITVPAYFND+QRQATKDAG+IAGL+VLR+INEPTAAALAYGLD Sbjct: 148 MKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLD 207 Query: 183 KKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFKKE 242 KK+ + VFD GGGTFD+S+LE+ DGVFEVK+TNGDT LGGEDFD+ LV I FKKE Sbjct: 208 KKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKE 267 Query: 243 NGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQFER 302 GIDL +D +ALQRL+EAAEKAKIELSS QTEINLPFI+A+++G +HLN++LTR +FE Sbjct: 268 EGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEE 327 Query: 303 LVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNP 362 LV LI +T+EPCKK L+DA LS SDI+EV+LVGGMTRMPK+Q +V++ F K PSKGVNP Sbjct: 328 LVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNP 387 Query: 363 DEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQVFS 422 DE VA GAAIQ GVL G+VKD+LLLDVTPLSLGIETLGGVFT +I RN+TIPTKKSQVFS Sbjct: 388 DEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFS 447 Query: 423 TAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQVS 482 TAAD Q+ V I++ QGER+M DNKLLG F L GIPPAP+G PQIEV FDIDANGI VS Sbjct: 448 TAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGIGTVS 507 Query: 483 ALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTE 542 A DKGTGK+Q I+I +SGGLS ++IE MV +AE A DK++REA+ETKN A+S+IY TE Sbjct: 508 AKDKGTGKSQSITIASSGGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTE 567 Query: 543 QSLREHGDKIAEAEQKSIRESIDALRTLLNDADP-DESKIKEATQKLMEVSMNLGKAIYE 601 +SL+E +KI E + + E I LR L+ + D D +IK+A L + S+ L ++ Y+ Sbjct: 568 KSLKEFEEKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYK 627 Query: 602 AQAKKDAA 609 Sbjct: 628 NMGAGGEG 635 >gnl|CDD|177026 CHL00094, dnaK, heat shock protein 70. Length = 621 Score = 802 bits (2073), Expect = 0.0 Identities = 366/636 (57%), Positives = 468/636 (73%), Gaps = 18/636 (2%) Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60 M KV+GIDLGTTNS VA+M+G VI NAEG RTTPS+V +T +G+ LVGQ AKRQAV Sbjct: 1 MGKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVI 60 Query: 61 NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIE--AQGKQYSPSQISAI 118 NP NT ++ KR IGR+F++ ++++A V +K+ G+ IE A K +SP +ISA Sbjct: 61 NPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQ 118 Query: 119 VLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALA 178 VL+K+ E A +LGETV++AVITVPAYFND+QRQATKDAG+IAGL+VLRIINEPTAA+LA Sbjct: 119 VLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLA 178 Query: 179 YGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT 238 YGLDKK+ T++VFD GGGTFDVS+LE+GDGVFEV +T+GDT LGG+DFD +V + Sbjct: 179 YGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKE 238 Query: 239 FKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRA 298 FKK+ GIDL +D ALQRL EAAEKAKIELS+ +QTEINLPFI+A G +H+ LTRA Sbjct: 239 FKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRA 298 Query: 299 QFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSK 358 +FE L + LI + P + L+DA L SDIDEVVLVGG TR+P IQ+ V+ K P++ Sbjct: 299 KFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQ 358 Query: 359 GVNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKS 418 VNPDEVVA+GAA+QAGVL G+VKD+LLLDVTPLSLG+ETLGGV T II RN+TIPTKKS Sbjct: 359 SVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKS 418 Query: 419 QVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGI 478 +VFSTA DNQ+ V I + QGER++ DNK LG F L GIPPAP+G PQIEV FDIDANGI Sbjct: 419 EVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGI 478 Query: 479 VQVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLI 538 + V+A DKGTGK Q I+IQ + L +++E+MVK+AE NA DK++RE ++ KN AESL Sbjct: 479 LSVTAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLC 538 Query: 539 YSTEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKA 598 Y E+ L+E DKI+E +++ I I LR L + + + IK ++L + M +GK Sbjct: 539 YQAEKQLKELKDKISEEKKEKIENLIKKLRQALQNDNYES--IKSLLEELQKALMEIGKE 596 Query: 599 IYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEE 634 +Y + + D A++ DDV+D D+ E Sbjct: 597 VYSSTSTTDPASN------------DDDVIDTDFSE 620 >gnl|CDD|30792 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]. Length = 579 Score = 678 bits (1751), Expect = 0.0 Identities = 360/603 (59%), Positives = 446/603 (73%), Gaps = 28/603 (4%) Query: 1 MSKVIGIDLGTTNSCVAIMDGKN-VRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAV 59 K IGIDLGTTNS VA+M G +VIENAEG R TPS+V F+ GE LVGQ AKRQAV Sbjct: 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAV 63 Query: 60 TNPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIV 119 NP NTIF+ KR IGR G +E GK+Y+P +ISA++ Sbjct: 64 DNPENTIFSIKRKIGRG-------------------SNGLKISVEVDGKKYTPEEISAMI 104 Query: 120 LQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAY 179 L K+KE AE++LGE V+ AVITVPAYFNDAQRQATKDA RIAGL+VLR+INEPTAAALAY Sbjct: 105 LTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAY 164 Query: 180 GLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTF 239 GLDK +TV+V+D GGGTFDVSLLE+GDGVFEV AT GD LGG+DFD+ L++++ F Sbjct: 165 GLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEF 224 Query: 240 KKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQ 299 K + GIDL+ D ALQRL+EAAEKAKIELSS +QT INLP I + L +LTRA+ Sbjct: 225 KGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDI----DLLKELTRAK 280 Query: 300 FERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKG 359 FE L+ L+++T+EP ++ L+DAGL SDID V+LVGG TR+P +Q+ V++FF K P K Sbjct: 281 FEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKS 340 Query: 360 VNPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQ 419 +NPDE VA+GAAIQA VL G+V D+LLLDV PLSLGIETLGGV T II+RN+TIP KKSQ Sbjct: 341 INPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQ 400 Query: 420 VFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIV 479 FSTAAD Q+AV+I + QGER+M ADNK LG+F+L GIPPAP+G PQIEV FDIDANGI+ Sbjct: 401 EFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGIL 460 Query: 480 QVSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIY 539 V+A D GTGK Q I+I+AS GLS E+IE+MV+DAE NA +DKK RE VE +N AESLIY Sbjct: 461 NVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIY 520 Query: 540 STEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAI 599 S E++L+E K++E E++ I E+I L L ++ +IK ++L EV+ L + Sbjct: 521 SLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG---EKEEIKAKIEELQEVTQKLAEKK 576 Query: 600 YEA 602 Y+ Sbjct: 577 YQQ 579 >gnl|CDD|35323 KOG0100, KOG0100, KOG0100, Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]. Length = 663 Score = 645 bits (1666), Expect = 0.0 Identities = 336/634 (52%), Positives = 444/634 (70%), Gaps = 23/634 (3%) Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60 + VIGIDLGTT SCV + V +I N +G R TPS V FTD+ ERL+G AK Q + Sbjct: 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTS 93 Query: 61 NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIE-----AQGKQYSPSQI 115 NP NTIF AKRLIGR+FND +V KD +PFK+V K G +I+ + K ++P +I Sbjct: 94 NPENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVN-KDGKPYIQVKVGGGETKVFTPEEI 152 Query: 116 SAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAA 175 SA++L KMKETAE++LG+ V+ AV+TVPAYFNDAQRQATKDAG IAGL+V+RIINEPTAA Sbjct: 153 SAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAA 212 Query: 176 ALAYGLDKKDA-RTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEH 234 A+AYGLDKKD + ++VFD GGGTFDVSLL + +GVFEV ATNGDT LGGEDFD ++E+ Sbjct: 213 AIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEY 272 Query: 235 ICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMK 294 +KK++G D+++D A+Q+L+ EKAK LSS Q I + + + Sbjct: 273 FIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEI----ESLFDGVDFSET 328 Query: 295 LTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN- 353 LTRA+FE L L +KT++P +K L+D+ L SDIDE+VLVGG TR+PK+QQ ++DFFN Sbjct: 329 LTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNG 388 Query: 354 KSPSKGVNPDEVVAMGAAIQAGVLQG--DVKDLLLLDVTPLSLGIETLGGVFTSIIDRNS 411 K PSKG+NPDE VA GAA+QAGVL G D D++LLDV PL+LGIET+GGV T +I RN+ Sbjct: 389 KEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNPLTLGIETVGGVMTKLIPRNT 448 Query: 412 TIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAF 471 IPTKKSQVFSTA DNQ V+I++ +GER M DN LLG+FDL GIPPAP+G PQIEV F Sbjct: 449 VIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTF 508 Query: 472 DIDANGIVQVSALDKGTGKAQQISIQASGG-LSSEDIEKMVKDAEMNAEMDKKRREAVET 530 ++DANGI+QVSA DKGTGK ++I+I G L+ EDIE+MV +AE AE DKK +E +E Sbjct: 509 EVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEA 568 Query: 531 KNHAESLIYSTEQSLREH---GDKIAEAEQKSIRESI-DALRTLLNDADPDESKIKEATQ 586 +N ES YS + + + G K+++ ++++I +++ +AL L ++ D + + KE + Sbjct: 569 RNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKK 628 Query: 587 KLMEVSMNLGKAIYE---AQAKKDAAADTATADT 617 +L V + +Y + DT D Sbjct: 629 ELEAVVQPIISKLYGGAGGAPEPAGEEDTDEKDE 662 >gnl|CDD|35324 KOG0101, KOG0101, KOG0101, Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]. Length = 620 Score = 546 bits (1407), Expect = e-156 Identities = 316/606 (52%), Positives = 416/606 (68%), Gaps = 17/606 (2%) Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60 S IGIDLGTT SCV + V +I N +G RTTPS+V FTD ERL+G AK Q Sbjct: 6 ESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDT-ERLIGDAAKNQVAR 64 Query: 61 NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQG----KQYSPSQIS 116 NP NT+F AKRLIGR F+D V D L PFK++ +GG I+ K ++P +IS Sbjct: 65 NPDNTVFDAKRLIGRFFDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEIS 124 Query: 117 AIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 ++VL K+KETAE++LG+TV KAV+TVPAYFND+QR ATKDA IAGL+VLRIINEPTAAA Sbjct: 125 SMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAALIAGLNVLRIINEPTAAA 184 Query: 177 LAYGLDKK--DARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEH 234 LAYGLDKK R V++FD GGGTFDVS+L + G+FEVKAT GDT LGGEDFD+ LV H Sbjct: 185 LAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNH 244 Query: 235 ICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMK 294 FK++ G D+ + AL+RL+ A E+AK LSS++Q I + + Sbjct: 245 FAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSL----YEGIDFYTS 300 Query: 295 LTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFN- 353 +TRA+FE L L + T+EP +K L+DA L SDIDEVVLVGG TR+PK+Q+ ++DFFN Sbjct: 301 ITRARFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNG 360 Query: 354 KSPSKGVNPDEVVAMGAAIQAGVLQGD----VKDLLLLDVTPLSLGIETLGGVFTSIIDR 409 K +K +NPDE VA GAA+QA +L GD ++DLLL+DV PLSLG+ET GGVFT +I R Sbjct: 361 KELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPLSLGVETAGGVFTVLIPR 420 Query: 410 NSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEV 469 N++IPTKK+Q F+T +DNQ V I++ +GER M DN LLG+F+L GIPPAP+G PQIEV Sbjct: 421 NTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 480 Query: 470 AFDIDANGIVQVSALDKGTGKAQQISIQ-ASGGLSSEDIEKMVKDAEMNAEMDKKRREAV 528 FDIDANGI+ V+A+DK TGK +I+I G LS E+IE+MV++AE D+K+++ V Sbjct: 481 TFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKV 540 Query: 529 ETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKL 588 KN ES ++ + ++ + KI E +++ I + + + L+ E + E QK Sbjct: 541 AAKNSLESYAFNMKATVEDEKGKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKE 600 Query: 589 MEVSMN 594 +E+ N Sbjct: 601 LELVCN 606 >gnl|CDD|35326 KOG0103, KOG0103, KOG0103, Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]. Length = 727 Score = 276 bits (706), Expect = 2e-74 Identities = 191/632 (30%), Positives = 302/632 (47%), Gaps = 59/632 (9%) Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60 MS V+G DLG N +A+ + V+ N R TP++V F + R +G AK Q T Sbjct: 1 MS-VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKN-RFIGVAAKNQQTT 58 Query: 61 NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQG----KQYSPSQIS 116 N NT+ KRLIGR+F+D V ++ +P +V+ K GD I+ + ++P Q+ Sbjct: 59 NVKNTVSNFKRLIGRKFSDPEVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVL 118 Query: 117 AIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAA 176 A++L K+K TAE L VS VI VP+YF D+QR+A DA RIAGL+ LR++N+ TA A Sbjct: 119 AMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARIAGLNPLRLMNDTTATA 178 Query: 177 LAYGLDKKD-------ARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDS 229 LAYG+ K D R V+ D G ++ VS+ G +V AT D LGG DFD Sbjct: 179 LAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDE 238 Query: 230 CLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQ 289 L++H FK + ID++ + A RL EK K LS+ ++ +N+ + Sbjct: 239 ALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKD--- 295 Query: 290 HLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQ 349 ++ K+ R +FE L L+++ P K L DA L DI V +VGG++R+P I++ + Sbjct: 296 -VSSKIKREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMIS 354 Query: 350 DFFNKSPSKGVNPDEVVAMGAAIQAGVLQGD--VKDLLLLDVTPLSLGIETL-----GGV 402 DFF K S+ +N DE VA GAA+Q +L V++ + D+ P S+ + + GG Sbjct: 355 DFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPYSISLRWVKQGEDGGS 414 Query: 403 FTSIIDRNSTIPTKK------SQVFSTAA--DNQSAVSIRIGQGERKMFADNKLLGQFDL 454 T + + P+ K F+ A + + + E+ + Sbjct: 415 VTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEF 474 Query: 455 ----VGIPPAPKGTPQIEVAF---DIDANGIVQVSALDKGTGKAQQ-------------- 493 V + G IE A DI+ + + K + Sbjct: 475 SKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKV 534 Query: 494 ---ISIQASGGLSSEDIEK-MVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSL-REH 548 I G L ++++E + K+ +M DK +E V+ KN E +Y L ++ Sbjct: 535 DLPIEAYTKGALITDELELYIEKENKM-ILQDKLEKETVDAKNALEEYVYDMRDKLSDKY 593 Query: 549 GDKIAEAEQKSIRESIDALRTLLNDADPDESK 580 D I +AE++ +++ + L + D++K Sbjct: 594 EDFITDAEREKLKKMLTDTEEWLYEDGEDQTK 625 >gnl|CDD|35327 KOG0104, KOG0104, KOG0104, Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]. Length = 902 Score = 217 bits (554), Expect = 8e-57 Identities = 182/707 (25%), Positives = 306/707 (43%), Gaps = 78/707 (11%) Query: 2 SKVIGIDLGTTNSCVAIMD-GKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60 V+ +DLG+ VA++ G + ++ N E R TPS+V F GER+ G+ A A Sbjct: 22 LAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKG-GERIFGEAAASMATR 80 Query: 61 NPSNTIFAAKRLIGRRFNDSTVAK-DASLVPFKIVE--GKGGDAWIEAQGKQYSPSQISA 117 P +T K L+G+ +D TV F++VE + + + ++YS ++ A Sbjct: 81 FPQSTYRQLKDLLGKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLA 140 Query: 118 IVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAAL 177 ++LQ K AE + + + VITVP +FN A+R+A A +IAGL+VL++IN+ TA AL Sbjct: 141 MILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVAL 200 Query: 178 AYGLDKK-----DARTVIVFDFGGGTFDVSLL--------EMGDGV--FEVKATNGDTFL 222 YG+ ++ + I +D G G+ +++ E G +V D L Sbjct: 201 NYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTL 260 Query: 223 GGEDFDSCLVEHICDTFKKENGI--DLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPF 280 GG + L +H+ + F +++ D+ + A+ +L + AE+ K LS+ S+ + Sbjct: 261 GGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQI-- 318 Query: 281 ISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTR 340 + +K+TR +FE L L ++ VEP L+ A LS +I++V+L GG TR Sbjct: 319 --ESLIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATR 376 Query: 341 MPKIQQSVQDFFNKSP-SKGVNPDEVVAMGAAIQAGVLQGD--VKDLLLLDVTPLSL--- 394 +PK+Q+++ K K +N DE MGA QA L VK ++D + Sbjct: 377 VPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSFKVKPFNVVDASVYPYLVE 436 Query: 395 -----GIETLGGVFTSIIDRNSTIPTKKSQVFSTAADNQSAVSIRIGQGERKMFADNKLL 449 GI L V + R S P KK F++ +D+ +I G N L Sbjct: 437 FETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFP-FNINYG-----DLGQN--L 488 Query: 450 GQFDLVGIPPAPKGTPQ-------IEVAFDIDANGIVQVSALD-----KGTGKAQQISIQ 497 +L G+ A K I+ +F +D +GIV VS ++ + + Sbjct: 489 TTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKST 548 Query: 498 ASGGLSSEDIEKMVKDAEMNAEMDKKRREAVET------KNHAESLIYSTEQSLREHGDK 551 S S+ + E+ D+ + ++K E E S TE+ E Sbjct: 549 LSKLGSTSEGEETSDDSVQEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKP 608 Query: 552 IAEAEQKS-IRESIDALRTLLNDADPDESKIKEATQKL------------MEVSMNLGKA 598 + E + + + T + +E+ + A KL E + N +A Sbjct: 609 TEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQKEKEKSEREEASNELEA 668 Query: 599 -IYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKDDEKDKKK 644 ++E Q K D A K +K V + +++D Sbjct: 669 FLFELQDKLDDDEYAEVATEEEKKILKKKVSLL-MDWLEEDGSQTPT 714 >gnl|CDD|31275 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]. Length = 342 Score = 60.2 bits (146), Expect = 2e-09 Identities = 67/281 (23%), Positives = 114/281 (40%), Gaps = 66/281 (23%) Query: 2 SKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVTN 61 S IGIDLGT N+ V + V PS+V EG+ Sbjct: 6 SNDIGIDLGTANTLVYVKGKGIVL---------NEPSVVAIESEGK-------------- 42 Query: 62 PSNTIFA----AKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISA 117 + + A AK+++GR T ++ P K G Sbjct: 43 -TKVVLAVGEEAKQMLGR-----TPGNIVAIRPMK-------------DGVIADFEVTEL 83 Query: 118 IVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAAL 177 ++ +K+ ++ + VI VP+ D +R+A K+A AG + +I EP AAA+ Sbjct: 84 MLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAI 143 Query: 178 AYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTF-LGGEDFDSCLVEHIC 236 GL + +V D GGGT +V+++ +G V + + +GG+ D ++ ++ Sbjct: 144 GAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIV------SSSSVRVGGDKMDEAIIVYV- 196 Query: 237 DTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEIN 277 +K+ + + + T AEK KIE+ S E + Sbjct: 197 ---RKKYNLLIGERT---------AEKIKIEIGSAYPEEED 225 >gnl|CDD|34429 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]. Length = 277 Score = 53.5 bits (128), Expect = 2e-07 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 18/131 (13%) Query: 119 VLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALA 178 +++++K+T E LG + A +P + + + AGL+VL +++EPTAA A Sbjct: 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAA--A 134 Query: 179 YGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDT 238 L D V D GGGT +S+++ G ++ G T H+ Sbjct: 135 DVLQLDDG---GVVDIGGGTTGISIVKKGKVIYSADEPTGGT-------------HMTLV 178 Query: 239 FKKENGIDLKQ 249 GI L++ Sbjct: 179 LAGNYGISLEE 189 >gnl|CDD|31190 COG0849, FtsA, Actin-like ATPase involved in cell division [Cell division and chromosome partitioning]. Length = 418 Score = 38.6 bits (90), Expect = 0.005 Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 32/198 (16%) Query: 161 AGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDT 220 AGL V I+ EP A+ALA + + V + D GGGT D+++ + G + G Sbjct: 177 AGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRY-----TGVI 231 Query: 221 FLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQT----EI 276 +GG+ + LK E AE+ KI+ S + E Sbjct: 232 PVGGDHVTKDI------------AKGLKTPF-------EEAERIKIKYGSALISLADDEE 272 Query: 277 NLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVG 336 + S S + + TR++ ++ +++ +E K L+ +GL VVL G Sbjct: 273 TIEVPSVGSDIPRQV----TRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTG 328 Query: 337 GMTRMPKIQQSVQDFFNK 354 G ++P I + + F + Sbjct: 329 GGAQLPGIVELAERIFGR 346 >gnl|CDD|31268 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]. Length = 502 Score = 33.8 bits (77), Expect = 0.13 Identities = 10/28 (35%), Positives = 15/28 (53%) Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIE 28 M V+GID+GTT+ + D V+ Sbjct: 3 MKYVLGIDIGTTSVKAVLFDEDGGEVVA 30 Score = 32.7 bits (74), Expect = 0.31 Identities = 25/114 (21%), Positives = 36/114 (31%), Gaps = 12/114 (10%) Query: 277 NLPFISANSAGAQ-HLNMKLTRAQFERL----VNHLIQKTVEPCKKCLQDAGLSPSDIDE 331 P + G L + TRA R V + +E ++ Sbjct: 351 RGPHADPAARGGFVGLTLPHTRAHLARAVLEGVAFALADGLEALEEL------GGKPPSR 404 Query: 332 VVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVLQGDVKDLL 385 V +VGG R P Q + D P +E A+G A A G + D Sbjct: 405 VRVVGGGARSPLWLQILADALGL-PVVVPEVEEAGALGGAALAAAALGGIYDSA 457 >gnl|CDD|145248 pfam01968, Hydantoinase_A, Hydantoinase/oxoprolinase. This family includes the enzymes hydantoinase and oxoprolinase EC:3.5.2.9. Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds. Length = 285 Score = 33.4 bits (77), Expect = 0.21 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 16/103 (15%) Query: 117 AIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLD------VLRIIN 170 A + M+ E + + I P Y + G + ++ V I++ Sbjct: 9 AYLAPIMRRYLEGVEDA-LKERGIKAPLYV-------MQSDGGLMSIEEARRKPVETILS 60 Query: 171 EPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEV 213 P A + + IV D GG + DVSL+ DG E+ Sbjct: 61 GPAAGVVGAAYTLAGLKNAIVVDMGGTSTDVSLII--DGEPEI 101 >gnl|CDD|30494 COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]. Length = 674 Score = 33.5 bits (76), Expect = 0.21 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 162 GLDVLRIINEPTAAALAYG-LDKKDARTVIVFDFGGGTFDVSLLEMG 207 V I++ P A + L A IVFD GG + DV+L+ G Sbjct: 252 EKPVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTSTDVALIIDG 298 Score = 29.2 bits (65), Expect = 3.6 Identities = 43/193 (22%), Positives = 65/193 (33%), Gaps = 37/193 (19%) Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPS-MVGFTDEGERLVGQPAKRQAV 59 M IGID+G T + ++D + TTP G + G RL + + V Sbjct: 1 MMLRIGIDVGGTFTDAVLLDEDGGVLATIK--VLTTPDLPSGIVNAGIRLALELLEGSEV 58 Query: 60 -------TNPSNTI---------------FAAKRLIGR----RFNDSTVAKDASLVPFKI 93 T +N + F IGR R + K LVP Sbjct: 59 DLVVHGTTLATNALLERKGLRTALITTKGFVDLIEIGRQNRPRLYPLYIKKPKPLVPRVR 118 Query: 94 VEGKGGDAWIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSK-AVITVPAYFNDAQRQ 152 V GG + A+G+ P + +E A + V AV ++ +Y N Sbjct: 119 V--FGGHERVGAEGEVIKPLDEEEV-----REAAAALKAAGVEAIAVSSLFSYRNPEHEL 171 Query: 153 ATKDAGRIAGLDV 165 + R G D+ Sbjct: 172 RVAEIIREIGPDI 184 >gnl|CDD|31267 COG1069, AraB, Ribulose kinase [Energy production and conversion]. Length = 544 Score = 31.8 bits (72), Expect = 0.57 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Query: 318 CLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGVL 377 +D G++ ID + GG+ + P + Q D + P D+ V +GAA+ A V Sbjct: 424 TFEDQGIA---IDTLFASGGIRKNPLLMQLYADVTGR-PVVIPASDQAVLLGAAMFAAVA 479 Query: 378 QGDVKDL 384 G DL Sbjct: 480 AGVHPDL 486 >gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly interact with rRNA. Archaeal L12p is believed to function in a similar fashion. However, hybrid ribosomes containing the large subunit from E. coli with an archaeal stalk are able to bind archaeal and eukaryotic elongation factors but not bacterial elongation factors. In several mesophilic and thermophilic archaeal species, the binding of 23S rRNA to protein L11 and to the L10/L12p pentameric complex was found to be temperature-dependent and cooperative.. Length = 106 Score = 31.3 bits (71), Expect = 0.83 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%) Query: 565 DALRTLLNDA--DPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTD 622 + L+ +L A + DE+++K L EV N+ +AI +A AAA A A A+ Sbjct: 20 ENLKKVLEAAGIEVDEARVKALVAALEEV--NIDEAIKKAAVAAAAAAPAAAAAAAAEEK 77 Query: 623 VKDDVVDADYEEIKDDE 639 ++ + EE K++E Sbjct: 78 AEEKEEEKKKEEEKEEE 94 >gnl|CDD|29417 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.. Length = 320 Score = 30.5 bits (69), Expect = 1.4 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Query: 312 VEPCKKCLQDAGLSPSDIDEVVLVGGMTR 340 VE KK L+DAG+ DID +++V T Sbjct: 55 VEAAKKALEDAGIDADDID-LIIVATSTP 82 >gnl|CDD|29418 cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.. Length = 361 Score = 30.6 bits (69), Expect = 1.6 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 16/86 (18%) Query: 255 QRLKEAAEKAKIE-----LSSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQ 309 ++LK K IE L +T P +S + + ++ R E Sbjct: 39 EKLKRLCAKTGIETRYLVLPGGEETYAPRPEMSPSLDERNDIALEEARELAEEAA----- 93 Query: 310 KTVEPCKKCLQDAGLSPSDIDEVVLV 335 + L +AGL PSDID +V+ Sbjct: 94 ------RGALDEAGLRPSDIDHLVVN 113 >gnl|CDD|30680 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein]. Length = 323 Score = 30.2 bits (68), Expect = 2.0 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 11/127 (8%) Query: 269 SSTSQTEINLPFISANSAGAQHLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSD 328 S SQ ++ ++ + L + ++ + ++ L+ AGL+P D Sbjct: 183 SDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVFKFAVRAMPKAIEEVLEKAGLTPED 242 Query: 329 IDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGV-NPDEVVAMGAA-----IQAGVLQGDVK 382 ID V R I +++ K V D+ AA + + +G +K Sbjct: 243 IDWFVPHQANLR---IIEAIAKKLGIPEEKVVVTVDKYGNTSAASIPLALDEALREGRIK 299 Query: 383 --DLLLL 387 DL+LL Sbjct: 300 PGDLVLL 306 Score = 29.4 bits (66), Expect = 3.2 Identities = 12/23 (52%), Positives = 18/23 (78%) Query: 312 VEPCKKCLQDAGLSPSDIDEVVL 334 VE +K L+DAG+SP DID +++ Sbjct: 57 VEAARKALEDAGISPDDIDLIIV 79 >gnl|CDD|144616 pfam01088, Peptidase_C12, Ubiquitin carboxyl-terminal hydrolase, family 1. Length = 211 Score = 29.9 bits (68), Expect = 2.1 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 9/69 (13%) Query: 567 LRTLLNDADPDE-------SKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTA 619 L LLN+ D K KE T+ L GKA+ ++ ++A A T Sbjct: 96 LHALLNNEDRINIELGSELKKFKEFTKGLD--PEERGKALENSEEIREAHNSFARQGQTE 153 Query: 620 KTDVKDDVV 628 D +DDV Sbjct: 154 APDAEDDVD 162 >gnl|CDD|145766 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal domain. This domain adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain. Length = 193 Score = 30.0 bits (68), Expect = 2.1 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 318 CLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAAIQAGV 376 L+ + ID ++ GG +R P + Q + D + P + P E A+GAA+ A V Sbjct: 134 ILEALAELGAPIDRIIASGGGSRNPLLLQLLADALGR-PVEVPEPAEATALGAALLAAV 191 >gnl|CDD|34868 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]. Length = 4600 Score = 30.1 bits (67), Expect = 2.2 Identities = 24/143 (16%), Positives = 62/143 (43%), Gaps = 12/143 (8%) Query: 505 EDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESI 564 +D+E++ + + + D EA E ++ + + + E+ + +E E + + E + Sbjct: 3835 DDLEELANEEDTANQSDLDESEARELESDMNGVT--KDSVVSENENSDSEEENQDLDEEV 3892 Query: 565 DALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTDVK 624 + + L+++ ++ + + L+E Q + +A +D +K D Sbjct: 3893 NDIPEDLSNSLNEKLWDEPNEEDLLETE----------QKSNEQSAANNESDLVSKEDDN 3942 Query: 625 DDVVDADYEEIKDDEKDKKKLSI 647 + D D +E +D+E+ + I Sbjct: 3943 KALEDKDRQEKEDEEEMSDDVGI 3965 >gnl|CDD|37283 KOG2072, KOG2072, KOG2072, Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]. Length = 988 Score = 30.0 bits (67), Expect = 2.3 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 7/107 (6%) Query: 505 EDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESI 564 ++++K K + +KR+E +E +N + EQ+ + + EAE+K + E Sbjct: 557 KNVDKEHKRILARKSLIEKRKEDLEKQNVEREAEEAQEQAKEQR--QAREAEEKRLIEEK 614 Query: 565 ---DALRTLLNDADPDESKIKEATQKLM--EVSMNLGKAIYEAQAKK 606 +A R L + ++KE ++L EV GK +K Sbjct: 615 KEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEK 661 >gnl|CDD|29978 cd00454, Trunc_globin, Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, eubacteria, unicellular eukaryotes, and plants. The truncated hemoglobins have a characteristic two-over-two alpha helical folding pattern that is distinct from the three-over-three pattern found in other globins. A subset of these have been demonstrated to form homodimers.. Length = 116 Score = 29.8 bits (67), Expect = 2.4 Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 8/51 (15%) Query: 290 HLNMKLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTR 340 HL +T +F+ + L L + G+ D ++ Sbjct: 68 HLPFPITEEEFDAWLELLRD--------ALDELGVPAELADALLARAERIA 110 >gnl|CDD|144572 pfam01031, Dynamin_M, Dynamin central region. This region lies between the GTPase domain, see pfam00350, and the pleckstrin homology (PH) domain, see pfam00169. Length = 295 Score = 29.8 bits (68), Expect = 2.4 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 16/65 (24%) Query: 300 FERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEV------VLVGGMTRMP----KIQQSVQ 349 FE LV I++ EP KCL DE+ + ++R P I++ V+ Sbjct: 194 FEVLVKQQIKRLEEPALKCLDLV------YDELRKIFLKIASKELSRFPNLKEAIKEVVE 247 Query: 350 DFFNK 354 D + Sbjct: 248 DILRE 252 >gnl|CDD|37831 KOG2620, KOG2620, KOG2620, Prohibitins and stomatins of the PID superfamily [Energy production and conversion]. Length = 301 Score = 29.9 bits (67), Expect = 2.5 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 564 IDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAK 620 + LR + D +P S +K A E AI E++ ++ A + A + +K Sbjct: 143 YECLRYEIRDIEPPPS-VKRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESK 198 >gnl|CDD|37652 KOG2441, KOG2441, KOG2441, mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification, Chromatin structure and dynamics]. Length = 506 Score = 29.7 bits (66), Expect = 2.9 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 7/89 (7%) Query: 521 DKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESK 580 D+K RE V + E + E+ E K+ E QK+ RE +T + + E++ Sbjct: 291 DRKAREEVRMRAQLERKM--AEKEKEEKEQKLRELAQKA-REERGGPQTGAIEKEDREAR 347 Query: 581 ----IKEATQKLMEVSMNLGKAIYEAQAK 605 I+ +K E NL +A + ++K Sbjct: 348 TREEIRRDRRKEREKDRNLSRAAPDKRSK 376 >gnl|CDD|33230 COG3424, BcsA, Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 356 Score = 29.5 bits (66), Expect = 2.9 Identities = 10/24 (41%), Positives = 14/24 (58%) Query: 312 VEPCKKCLQDAGLSPSDIDEVVLV 335 V+ ++ L + L P DID VV V Sbjct: 81 VDALRRALDGSPLRPEDIDAVVTV 104 >gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285 Score = 29.4 bits (66), Expect = 3.3 Identities = 13/48 (27%), Positives = 23/48 (47%) Query: 165 VLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFE 212 +L +N +LAY + KDA +++ GG + MG+ F+ Sbjct: 53 ILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFD 100 >gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285 Score = 29.2 bits (65), Expect = 3.6 Identities = 14/48 (29%), Positives = 23/48 (47%) Query: 165 VLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFE 212 +L +N +LAY + KDA +++ GG + MG+ FE Sbjct: 53 ILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFE 100 >gnl|CDD|119433 cd05173, PI3Kc_IA_beta, Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and delta) and IB (gamma). Class IA enzymes contain an N-terminal p85 binding domain, a Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-terminal ATP-binding cataytic domain. They associate with a regulatory subunit of the p85 family and are activated by tyrosine kinase receptors. In addition, PI3Kbeta can also be activated by G-protein-coupled receptors. Deletion of PI3Kbeta in mice results in early lethality at around day three of development. PI3Kbeta plays an important role in regulating sustained integrin activation and stable platelet agrregation, especially under conditions of high shear stress.. Length = 362 Score = 29.2 bits (65), Expect = 3.7 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 22/73 (30%) Query: 242 ENGIDLKQDTLALQRL-------KEAAEKAK---------------IELSSTSQTEINLP 279 +NG DL+QD L LQ L KEA + IE+ S+++T ++ Sbjct: 100 KNGDDLRQDMLTLQILRLMDTLWKEAGLDLRIVPYGCLATGDRSGLIEVVSSAETIADIQ 159 Query: 280 FISANSAGAQHLN 292 S+N A A N Sbjct: 160 LNSSNVAAAAAFN 172 >gnl|CDD|147368 pfam05153, DUF706, Family of unknown function (DUF706). Family of uncharacterized eukaryotic function. Some members have a described putative function, but a common theme is not evident. Length = 248 Score = 29.2 bits (66), Expect = 4.2 Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 2/30 (6%) Query: 559 SIRESIDALRTLLNDADPD--ESKIKEATQ 586 +I E+++ L TL++++DPD +I+ Q Sbjct: 36 TIWEALELLNTLVDESDPDTDLPQIQHLLQ 65 >gnl|CDD|29416 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.. Length = 375 Score = 29.1 bits (65), Expect = 4.2 Identities = 21/68 (30%), Positives = 24/68 (35%), Gaps = 1/68 (1%) Query: 312 VEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGVNPDEVVAMGAA 371 E + L DAGL P+DID VV VG G V A GA+ Sbjct: 21 AEAARAALDDAGLEPADIDAVV-VGNAAGGRFQSFPGALIAEYLGLLGKPATRVEAAGAS 79 Query: 372 IQAGVLQG 379 A V Sbjct: 80 GSAAVRAA 87 >gnl|CDD|36599 KOG1385, KOG1385, KOG1385, Nucleoside phosphatase [Nucleotide transport and metabolism]. Length = 453 Score = 28.8 bits (64), Expect = 5.3 Identities = 11/34 (32%), Positives = 15/34 (44%) Query: 180 GLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEV 213 L RTV V D GGG+ ++ L + E Sbjct: 206 TLGAPGHRTVGVVDLGGGSTQITFLPTFEDTLEA 239 >gnl|CDD|147564 pfam05451, Phytoreo_Pns, Phytoreovirus nonstructural protein Pns10/11. This family consists of Phytoreovirus nonstructural proteins Pns10 and Pns11. Genome segment S11 of rice gall dwarf virus (RGDV), a member of Phytoreovirus encodes a putative protein of 40 kDa that exhibits approximately 37% homology at the amino acid level to the nonstructural proteins Pns10 of rice dwarf and wound tumour viruses, which are other members of Phytoreovirus. Length = 344 Score = 28.6 bits (64), Expect = 5.8 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Query: 540 STEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEAT-QKLMEVSMNLGKA 598 TE+ +R H + + E I DA++ L D + I EA KL + Sbjct: 4 DTERFVRLHVELLCAHEGHEIISKFDAIKKLNLTQDGGANNISEAAFSKLRNFARKSEAY 63 Query: 599 IYEAQAKKDAAADTATA 615 I A++D DT A Sbjct: 64 IASDLAERDLTRDTHKA 80 >gnl|CDD|30900 COG0554, GlpK, Glycerol kinase [Energy production and conversion]. Length = 499 Score = 28.6 bits (64), Expect = 5.9 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 10/87 (11%) Query: 305 NHLIQKTVEPCKKCLQDAGL-------SPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPS 357 H+ + T+E Q + S + + + GG +R + Q D Sbjct: 374 AHIARATLESI--AYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADILGVPVE 431 Query: 358 KGVNPDEVVAMGAAIQAGVLQGDVKDL 384 + V E A+GAA AG+ G KDL Sbjct: 432 RPVV-LETTALGAAYLAGLAVGFWKDL 457 >gnl|CDD|109812 pfam00769, ERM, Ezrin/radixin/moesin family. This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244 Score = 28.2 bits (63), Expect = 6.8 Identities = 19/134 (14%), Positives = 51/134 (38%), Gaps = 6/134 (4%) Query: 519 EMDKKRREAVETKNHAESLIYSTEQSLREHGDKIA--EAEQKSIRESIDALRTLLNDADP 576 E +++++E E E + ++ L E+ + E + K E L ++ + Sbjct: 2 EAEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEE 61 Query: 577 DESKIKEATQKLMEVSMNLGKAIYEAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIK 636 + +++E E L + EA A+ + ++ ++ +A + Sbjct: 62 ENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREA----QE 117 Query: 637 DDEKDKKKLSIFLS 650 E+ +++L + Sbjct: 118 AHERARQELLEAAA 131 >gnl|CDD|34366 COG4752, COG4752, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 190 Score = 28.4 bits (63), Expect = 7.0 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 17/118 (14%) Query: 102 WIEAQGKQYSPSQISAIVLQKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIA 161 W+ +G++Y+P++ + L ++ T E + E + K P + R I+ Sbjct: 66 WLSGEGRKYNPTRYEIVQLVRLAYTLEEVI-EDIEKEEGRRPLIVGTSARTYPNT---IS 121 Query: 162 GLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGD 219 + I E +D +I+F G G D L+ D + E D Sbjct: 122 YSWLRNEIQE------------RDKPWLILFGTGWGLPD-ELMNTSDYILEPIRAASD 166 >gnl|CDD|36720 KOG1507, KOG1507, KOG1507, Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics, Cell cycle control, cell division, chromosome partitioning]. Length = 358 Score = 28.0 bits (62), Expect = 8.1 Identities = 21/157 (13%), Positives = 57/157 (36%), Gaps = 2/157 (1%) Query: 488 TGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYSTEQSLRE 547 + +S + + + DA + D+ + T + + SL Sbjct: 4 DKDSGNMSDAPTPHNTPSSASESPADAPSGSLDDESSSDEESTPKLLSA-LDGRLASLAG 62 Query: 548 HGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIYEAQAKKD 607 + E +++ + AL+ L + D E+K +E +L L + +++ + ++ Sbjct: 63 LLSDMVENLPPAVKNRVLALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFD-KRREI 121 Query: 608 AAADTATADTTAKTDVKDDVVDADYEEIKDDEKDKKK 644 + + + + + E+ ++ EK+ K Sbjct: 122 INGEVEPTEEEIEWPEEIEDEGNLAEDTEEAEKEDPK 158 >gnl|CDD|32252 COG2069, CdhD, CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]. Length = 403 Score = 28.0 bits (62), Expect = 8.3 Identities = 10/22 (45%), Positives = 14/22 (63%) Query: 161 AGLDVLRIINEPTAAALAYGLD 182 GL RI+ +PT AL YG++ Sbjct: 275 RGLPRDRIVMDPTTCALGYGIE 296 >gnl|CDD|147033 pfam04675, DNA_ligase_A_N, DNA ligase N terminus. This region is found in many but not all ATP-dependent DNA ligase enzymes (EC:6.5.1.1). It is thought to be involved in DNA binding and in catalysis. In human DNA ligase I, and in Saccharomyces cerevisiae, this region was necessary for catalysis, and separated from the amino terminus by targeting elements. In vaccinia virus this region was not essential for catalysis, but deletion decreases the affinity for nicked DNA and decreased the rate of strand joining at a step subsequent to enzyme-adenylate formation. Length = 177 Score = 28.0 bits (63), Expect = 8.5 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 11/85 (12%) Query: 501 GLSSEDIEKMVKD----AEMNAEMDKKRREAVETKNHAESLIYSTEQSLREHGDKIAEAE 556 GLS + IE++ K E+ E+ KKR++ + L T Q + E DKIA+ Sbjct: 74 GLSEDSIEELYKKVGDLGEVAEELLKKRKQTLFKP---PPL---TVQEVYETLDKIAKLS 127 Query: 557 QKSIRES-IDALRTLLNDADPDESK 580 K ++ ID L+ LL+ A P E+K Sbjct: 128 GKGSQDEKIDLLKKLLSRATPLEAK 152 >gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285 Score = 28.0 bits (62), Expect = 9.2 Identities = 14/48 (29%), Positives = 22/48 (45%) Query: 165 VLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFE 212 +L +N LAY + KDA +++ GG + MG+ FE Sbjct: 53 ILEKVNSQFVVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFE 100 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.313 0.130 0.352 Gapped Lambda K H 0.267 0.0573 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 7,079,833 Number of extensions: 369374 Number of successful extensions: 1073 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1027 Number of HSP's successfully gapped: 81 Length of query: 652 Length of database: 6,263,737 Length adjustment: 100 Effective length of query: 552 Effective length of database: 4,102,837 Effective search space: 2264766024 Effective search space used: 2264766024 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 61 (27.6 bits)