BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764494|ref|YP_003065050.2| molecular chaperone DnaK
[Candidatus Liberibacter asiaticus str. psy62]
         (652 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764494|ref|YP_003065050.2| molecular chaperone DnaK [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 652

 Score = 1324 bits (3426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/652 (100%), Positives = 652/652 (100%)

Query: 1   MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60
           MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT
Sbjct: 1   MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60

Query: 61  NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVL 120
           NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVL
Sbjct: 61  NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVL 120

Query: 121 QKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG 180
           QKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG
Sbjct: 121 QKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG 180

Query: 181 LDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK 240
           LDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK
Sbjct: 181 LDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK 240

Query: 241 KENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF 300
           KENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF
Sbjct: 241 KENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF 300

Query: 301 ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGV 360
           ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGV
Sbjct: 301 ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGV 360

Query: 361 NPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQV 420
           NPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQV
Sbjct: 361 NPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQV 420

Query: 421 FSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQ 480
           FSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQ
Sbjct: 421 FSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQ 480

Query: 481 VSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYS 540
           VSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYS
Sbjct: 481 VSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYS 540

Query: 541 TEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIY 600
           TEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIY
Sbjct: 541 TEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIY 600

Query: 601 EAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKDDEKDKKKLSIFLSRT 652
           EAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKDDEKDKKKLSIFLSRT
Sbjct: 601 EAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKDDEKDKKKLSIFLSRT 652


>gi|254781177|ref|YP_003065590.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 440

 Score = 40.4 bits (93), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 89/192 (46%), Gaps = 25/192 (13%)

Query: 161 AGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVF-EVKATNGD 219
           A L V R++  P A+ LA  +D +     +V D GGGT  +++ + G  V+ +V A  G 
Sbjct: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGG- 261

Query: 220 TFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLP 279
                         H+ +   +  G+ +  D    +RLK     + I   +     +++P
Sbjct: 262 -------------SHVTNDLAR--GLSISLDN--AERLK-VMHPSIIPSLADEHDILSIP 303

Query: 280 FISANSAGAQHLNM-KLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGM 338
            I      A H ++ +++RA   R++   I++T E   + ++ +G S      +VL GG 
Sbjct: 304 TI----GNADHNDLVQVSRAMISRIIQARIEETFELIGERIKKSGFSSLASKRIVLTGGA 359

Query: 339 TRMPKIQQSVQD 350
           +++  +Q+ +++
Sbjct: 360 SQVIGLQEMLRE 371


>gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 586

 Score = 25.0 bits (53), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 274 TEINLPFISANSAGAQHL 291
           T++N+ F+SAN  G  H+
Sbjct: 121 TKVNIEFVSANPTGPMHV 138


>gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 686

 Score = 24.6 bits (52), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 19 MDGKNVRVIENAEGTRTTPSM-VGFTDE 45
           D  ++R++E  E  R  P M +G TDE
Sbjct: 44 YDASSIRILEGLEPVRMRPGMYIGGTDE 71


>gi|254781167|ref|YP_003065580.1| tRNA-dihydrouridine synthase A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 322

 Score = 24.3 bits (51), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 13/48 (27%)

Query: 176 ALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLG 223
           A+  GL  KD R +   D+             D V+E+K  N D F+G
Sbjct: 158 AILKGLSPKDNRKIPNLDY-------------DIVYEIKKENPDLFIG 192


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.313    0.130    0.352 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,193
Number of Sequences: 1233
Number of extensions: 15723
Number of successful extensions: 39
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 11
length of query: 652
length of database: 328,796
effective HSP length: 80
effective length of query: 572
effective length of database: 230,156
effective search space: 131649232
effective search space used: 131649232
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 41 (20.4 bits)