BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764494|ref|YP_003065050.2| molecular chaperone DnaK [Candidatus Liberibacter asiaticus str. psy62] (652 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764494|ref|YP_003065050.2| molecular chaperone DnaK [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 1324 bits (3426), Expect = 0.0, Method: Compositional matrix adjust. Identities = 652/652 (100%), Positives = 652/652 (100%) Query: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT Sbjct: 1 MSKVIGIDLGTTNSCVAIMDGKNVRVIENAEGTRTTPSMVGFTDEGERLVGQPAKRQAVT 60 Query: 61 NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVL 120 NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVL Sbjct: 61 NPSNTIFAAKRLIGRRFNDSTVAKDASLVPFKIVEGKGGDAWIEAQGKQYSPSQISAIVL 120 Query: 121 QKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG 180 QKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG Sbjct: 121 QKMKETAESFLGETVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYG 180 Query: 181 LDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK 240 LDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK Sbjct: 181 LDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLGGEDFDSCLVEHICDTFK 240 Query: 241 KENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF 300 KENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF Sbjct: 241 KENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLPFISANSAGAQHLNMKLTRAQF 300 Query: 301 ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGV 360 ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGV Sbjct: 301 ERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGMTRMPKIQQSVQDFFNKSPSKGV 360 Query: 361 NPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQV 420 NPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQV Sbjct: 361 NPDEVVAMGAAIQAGVLQGDVKDLLLLDVTPLSLGIETLGGVFTSIIDRNSTIPTKKSQV 420 Query: 421 FSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQ 480 FSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQ Sbjct: 421 FSTAADNQSAVSIRIGQGERKMFADNKLLGQFDLVGIPPAPKGTPQIEVAFDIDANGIVQ 480 Query: 481 VSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYS 540 VSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYS Sbjct: 481 VSALDKGTGKAQQISIQASGGLSSEDIEKMVKDAEMNAEMDKKRREAVETKNHAESLIYS 540 Query: 541 TEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIY 600 TEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIY Sbjct: 541 TEQSLREHGDKIAEAEQKSIRESIDALRTLLNDADPDESKIKEATQKLMEVSMNLGKAIY 600 Query: 601 EAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKDDEKDKKKLSIFLSRT 652 EAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKDDEKDKKKLSIFLSRT Sbjct: 601 EAQAKKDAAADTATADTTAKTDVKDDVVDADYEEIKDDEKDKKKLSIFLSRT 652 >gi|254781177|ref|YP_003065590.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 40.4 bits (93), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/192 (22%), Positives = 89/192 (46%), Gaps = 25/192 (13%) Query: 161 AGLDVLRIINEPTAAALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVF-EVKATNGD 219 A L V R++ P A+ LA +D + +V D GGGT +++ + G V+ +V A G Sbjct: 203 AHLSVERMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGG- 261 Query: 220 TFLGGEDFDSCLVEHICDTFKKENGIDLKQDTLALQRLKEAAEKAKIELSSTSQTEINLP 279 H+ + + G+ + D +RLK + I + +++P Sbjct: 262 -------------SHVTNDLAR--GLSISLDN--AERLK-VMHPSIIPSLADEHDILSIP 303 Query: 280 FISANSAGAQHLNM-KLTRAQFERLVNHLIQKTVEPCKKCLQDAGLSPSDIDEVVLVGGM 338 I A H ++ +++RA R++ I++T E + ++ +G S +VL GG Sbjct: 304 TI----GNADHNDLVQVSRAMISRIIQARIEETFELIGERIKKSGFSSLASKRIVLTGGA 359 Query: 339 TRMPKIQQSVQD 350 +++ +Q+ +++ Sbjct: 360 SQVIGLQEMLRE 371 >gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 586 Score = 25.0 bits (53), Expect = 4.3, Method: Compositional matrix adjust. Identities = 8/18 (44%), Positives = 13/18 (72%) Query: 274 TEINLPFISANSAGAQHL 291 T++N+ F+SAN G H+ Sbjct: 121 TKVNIEFVSANPTGPMHV 138 >gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 686 Score = 24.6 bits (52), Expect = 5.3, Method: Compositional matrix adjust. Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Query: 19 MDGKNVRVIENAEGTRTTPSM-VGFTDE 45 D ++R++E E R P M +G TDE Sbjct: 44 YDASSIRILEGLEPVRMRPGMYIGGTDE 71 >gi|254781167|ref|YP_003065580.1| tRNA-dihydrouridine synthase A [Candidatus Liberibacter asiaticus str. psy62] Length = 322 Score = 24.3 bits (51), Expect = 6.4, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 13/48 (27%) Query: 176 ALAYGLDKKDARTVIVFDFGGGTFDVSLLEMGDGVFEVKATNGDTFLG 223 A+ GL KD R + D+ D V+E+K N D F+G Sbjct: 158 AILKGLSPKDNRKIPNLDY-------------DIVYEIKKENPDLFIG 192 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.313 0.130 0.352 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 381,193 Number of Sequences: 1233 Number of extensions: 15723 Number of successful extensions: 39 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 11 length of query: 652 length of database: 328,796 effective HSP length: 80 effective length of query: 572 effective length of database: 230,156 effective search space: 131649232 effective search space used: 131649232 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 41 (20.4 bits)