HHsearch alignment for GI: 255764495 and conserved domain: PRK04036
>PRK04036 DNA polymerase II small subunit; Validated.
Probab=99.30 E-value=7.4e-11 Score=90.24 Aligned_cols=196 Identities=19% Similarity=0.242 Sum_probs=101.5
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH--------HCCCCEEEECCCCCCC----
Q ss_conf 7889941114278854100022210001210000012330899999999996--------2699799993744448----
Q gi|255764495|r 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDIL--------LHNVDHVSITGDIVNF---- 77 (309)
Q Consensus 10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~--------~~~pD~vvitGDl~~~---- 77 (309)
T Consensus 237 v~aafiSDiHvGS-----------------------k~Fle~~w~kFi~Wln~~~~~~~~a~~vkYlviaGD~VDGVGiY 293 (497)
T PRK04036 237 VYAVFISDVHVGS-----------------------KEFLEDAFEKFLDWLNGEVGSEEIASRVKYLIIAGDLVDGIGIY 293 (497)
T ss_pred EEEEEEECCCCCC-----------------------HHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEECCCCCCEECC
T ss_conf 6899994222171-----------------------87879999999998658986344564053899945743640058
Q ss_pred -CC---------HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHH-HHHHHHCCCCCCCCCCCCCEEEEECCC
Q ss_conf -99---------8999999999986189971899945884222203567664-324543134444455562127997198
Q gi|255764495|r 78 -TC---------NREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLH-AWKDYITSDTTCSTGKKLFPYLRIRNN 146 (309)
Q Consensus 78 -~~---------~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (309)
T Consensus 294 PgQe~eL~i~di~~QY~~~a~~l~~iP~~I~iii~PGNHDavR~AEPQP~l~~~~~~~~~~---~n~~~v~NP~~v~l~G 370 (497)
T PRK04036 294 PGQEKELDIVDIYEQYEEAAEYLSQIPEHIKIIISPGNHDAVRLAEPQPAFPEEIASLFPK---ENVTFVSNPAVVNLHG 370 (497)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHCCC---CCEEEECCCEEEEECC
T ss_conf 9843414307899999999999985855757998579866335468999988888842554---7869967974899888
Q ss_pred EEEEEEC-----CCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 7999832-----88888875547600899999999998524336970899983768887643110127978999999874
Q gi|255764495|r 147 IALIGCS-----TAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHE 221 (309)
Q Consensus 147 ~~~i~l~-----s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~ 221 (309)
T Consensus 371 ~~vL~YHG~S~dd~v~~ip~~s--y~~p~--~~m~~lLkr---RHLaP~~G~~~p-iape~--~D~l--------vId-~ 431 (497)
T PRK04036 371 VDVLIYHGRSIDDVIGLIPGAS--YDKPG--KAMEELLKR---RHLAPIYGGRTP-IAPEK--EDYL--------VID-E 431 (497)
T ss_pred EEEEEECCCCHHHHHHHCCCCC--CCCHH--HHHHHHHHH---CCCCCCCCCCCC-CCCCC--CCCE--------EEC-C
T ss_conf 7899886876889997575777--57989--999999986---155876589677-79998--7866--------324-8
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCC
Q ss_conf 98199998767532478716998689999576235
Q gi|255764495|r 222 GADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQ 256 (309)
Q Consensus 222 ~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~ 256 (309)
T Consensus 432 vPDif~tGHvH~~~~~~Y~g----v~~--insgtw 460 (497)
T PRK04036 432 VPDIFHTGHVHINGVGNYRG----VLL--VNSGTW 460 (497)
T ss_pred CCCEEECCCCCEECCCCCCC----EEE--EECCCC
T ss_conf 98617727501001000478----889--823766