HHsearch alignment for GI: 255764495 and conserved domain: PRK10966

>PRK10966 exonuclease subunit SbcD; Provisional.
Probab=99.89  E-value=6.3e-21  Score=156.53  Aligned_cols=246  Identities=18%  Similarity=0.197  Sum_probs=128.1

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH--HHHHHH
Q ss_conf             788994111427885410002221000121000001233089999999999626997999937444489989--999999
Q gi|255764495|r   10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNR--EIFTST   87 (309)
Q Consensus        10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~--~~~~~~   87 (309)
T Consensus         1 MkiLHTSDWHLGk~l~g----------------~sr~~eq~~fL~~l~~~~~~e~vDavlIAGDifD~~~P~~~A~~l~~   64 (402)
T PRK10966          1 MRILHTSDWHLGQNFYS----------------KSRAAEHQAFLDWLLEQAQEHQVDAIIVAGDIFDTGSPPSYARELYN   64 (402)
T ss_pred             CCEEEHHHHHCCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHH
T ss_conf             95076103343821489----------------78299999999999999998499999988755799999999999999


Q ss_pred             HHHHHHCC-CCCEEEEECCCCCCCCCHHHHHH-HHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCC---CC
Q ss_conf             99986189-97189994588422220356766-432454313444445556212799719879998328888887---55
Q gi|255764495|r   88 HWLRSIGN-PHDISIVPGNHDAYISGAKEKSL-HAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPP---FS  162 (309)
Q Consensus        88 ~~~~~l~~-~~~v~~v~GNHD~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~---~~  162 (309)
T Consensus        65 ~fl~~l~~~~~~vvvIaGNHDS~~rL~~~~~ll~~~~~~v~~~~~~~~~~~~i~l~~~~G~~~~~~~alPyl~p~~~~~~  144 (402)
T PRK10966         65 RFVVNLQQTGCQLVVLAGNHDSVATLNESRDLLAFLNTTVIASASDDLGHQVIILPRRDGTPGAVLCAIPFLRPRDVITS  144 (402)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCHHHHHCCHHHHHHCCEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCCHHHHHHH
T ss_conf             99999996699689994798987776243657886786997035656666429985599877689997798998996532


Q ss_pred             CCCEECHH-HH----------HHHHH---HHHHCCCCCCEEEEEEECCCCCCCCCCCCC---CCCHHHHH-HHHHHCCCE
Q ss_conf             47600899-99----------99999---985243369708999837688876431101---27978999-999874981
Q gi|255764495|r  163 ANGYFGQE-QA----------HATSK---LLRKANKKGFFRIIMMHHPPVLDTSSLYNR---MFGIQRFQ-KMIWHEGAD  224 (309)
Q Consensus       163 ~~g~~~~~-q~----------~~l~~---~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~---~~~~~~l~-~~l~~~~v~  224 (309)
T Consensus       145 ~~g~~~~~~~~~l~~~i~~~~~~~~~~a~~~~~~~~~~~p~i~~~Hl~~~G~~~sdSeR~i~vGg~~~v~~~~f--~~~d  222 (402)
T PRK10966        145 QAGLSGIEKQQALQQAIADHYQQLYQLACELRDALGQPLPIIATGHLTTVGASKSDSVRDIYIGTLDAFPAQAF--PPAD  222 (402)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHC--CCCC
T ss_conf             04777115899999999999999999999986311457756999730542776577624688878240568677--9878


Q ss_pred             EEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf             99998767532478716998689999576235778888778548999953898
Q gi|255764495|r  225 LILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKNE  277 (309)
Q Consensus       225 lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~~  277 (309)
T Consensus       223 YvALGHlH~pQ~v---~~~~~irYSGSP-l~~sFsE~~~~K~v~lVd~~~~~~  271 (402)
T PRK10966        223 YIALGHIHRAQKV---GGTEHIRYCGSP-IPLSFDELGKSKSVHLVEFDQGKL  271 (402)
T ss_pred             EEECCCCCCCCCC---CCCCCEEECCCC-CCCCCCCCCCCCEEEEEEECCCCC
T ss_conf             7635776665606---899867976985-523533246765599999779984