HHsearch alignment for GI: 255764495 and conserved domain: TIGR00619
>TIGR00619 sbcd nuclease SbcCD, D subunit; InterPro: IPR004593 All proteins in this family for which functions are known are double-stranded DNA exonuclease (as part of a complex with SbcC homologs). This complex functions in the initiation of recombination and recombinational repair and is particularly important in regulating the stability of DNA sections that can form secondary structures. This family is likely to be homologous to the MRE11 family.; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=99.51 E-value=3.3e-14 Score=112.31 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=71.7
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH--HHHHHH
Q ss_conf 889941114278854100022210001210000012330899999999996269979999374444899899--999999
Q gi|255764495|r 11 VLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNRE--IFTSTH 88 (309)
Q Consensus 11 ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~--~~~~~~ 88 (309)
T Consensus 2 riLHtsDwHlGk~l~~GhinPat--G-----l~Sr~~e~~~~L~~l~~~~~~e~~Da~lvAGDvFD~~~P~~ea~~L~~~ 74 (275)
T TIGR00619 2 RILHTSDWHLGKTLEGGHINPAT--G-----LVSRLAEQKAFLDDLLEILKAEQVDALLVAGDVFDTANPPAEAQELFYA 74 (275)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCH--H-----HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 40013057513233787103002--2-----5548999999999999999738998899700007889887999999999
Q ss_pred HHHHHC---CCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 998618---997189994588422220356766
Q gi|255764495|r 89 WLRSIG---NPHDISIVPGNHDAYISGAKEKSL 118 (309)
Q Consensus 89 ~~~~l~---~~~~v~~v~GNHD~~~~~~~~~~~ 118 (309)
T Consensus 75 ~l~~L~~~~~R~p~Vvi~GNHD~~~~Ls~~~~L 107 (275)
T TIGR00619 75 FLLNLSDANPRLPIVVISGNHDSADRLSAAKKL 107 (275)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCHHHHCHHHHH
T ss_conf 999998538961278704788877861116778