Query         gi|255764495|ref|YP_003065022.2| putative phosphoesterase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 309
No_of_seqs    192 out of 2664
Neff          9.8 
Searched_HMMs 39220
Date          Sun May 29 23:04:03 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764495.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK11148 cyclic 3',5'-adenosin 100.0 3.8E-36 9.6E-41  256.7  26.8  239    6-287    12-262 (275)
  2 COG1409 Icc Predicted phosphoh 100.0   2E-26   5E-31  192.7  21.8  230   10-276     1-237 (301)
  3 PRK11340 phosphodiesterase Yae  99.9 4.4E-22 1.1E-26  164.1  18.0  168   10-237    49-216 (270)
  4 PRK10966 exonuclease subunit S  99.9 6.3E-21 1.6E-25  156.5  19.7  246   10-277     1-271 (402)
  5 KOG3770 consensus               99.9 5.5E-19 1.4E-23  143.7  20.9  264    8-276   137-446 (577)
  6 COG0420 SbcD DNA repair exonuc  99.8 4.2E-19 1.1E-23  144.5  18.0  245   10-283     1-258 (390)
  7 pfam00149 Metallophos Calcineu  99.8   9E-19 2.3E-23  142.3  16.0  185   10-234     1-186 (186)
  8 KOG1432 consensus               99.8 1.6E-15 4.2E-20  120.9  22.4  264    6-286    50-360 (379)
  9 KOG1378 consensus               99.8 3.8E-16 9.6E-21  125.1  19.1  163   64-236   174-346 (452)
 10 COG2129 Predicted phosphoester  99.8 1.5E-15 3.9E-20  121.1  21.5  217    9-287     3-225 (226)
 11 COG1408 Predicted phosphohydro  99.7 1.3E-15 3.2E-20  121.7  11.0   79   10-114    45-123 (284)
 12 COG1768 Predicted phosphohydro  99.6 9.8E-15 2.5E-19  115.8  11.8  194   10-236     1-201 (230)
 13 PRK09453 phosphodiesterase; Pr  99.6 4.1E-13   1E-17  105.1  18.2  155   10-271     1-161 (183)
 14 PRK05340 UDP-2,3-diacylglucosa  99.6 5.7E-13 1.4E-17  104.2  17.0   77   10-111     1-85  (240)
 15 TIGR00619 sbcd nuclease SbcCD,  99.5 3.3E-14 8.4E-19  112.3   6.5  101   11-118     2-107 (275)
 16 TIGR01854 lipid_A_lpxH UDP-2,3  99.4 2.9E-12 7.5E-17   99.5  10.7  178   13-241     2-212 (241)
 17 TIGR00040 yfcE phosphodiestera  99.4   1E-11 2.6E-16   95.9  13.2  163   10-275     1-165 (170)
 18 COG0622 Predicted phosphoester  99.4 1.4E-10 3.6E-15   88.4  19.0  156    9-275     1-156 (172)
 19 KOG2679 consensus               99.4 1.1E-10 2.9E-15   89.0  17.2  191   58-257    69-276 (336)
 20 COG2908 Uncharacterized protei  99.4 1.9E-12 4.9E-17  100.7   7.5  198   14-253     2-214 (237)
 21 PRK09418 bifunctional 2',3'-cy  99.3 2.3E-09 5.8E-14   80.5  20.6  247    6-282    36-326 (780)
 22 PRK04036 DNA polymerase II sma  99.3 7.4E-11 1.9E-15   90.2  12.4  196   10-256   237-460 (497)
 23 KOG2310 consensus               99.2 6.7E-09 1.7E-13   77.4  19.4  233    3-273     8-291 (646)
 24 TIGR00583 mre11 DNA repair pro  99.2 6.9E-11 1.8E-15   90.5   8.1  236    9-273     3-290 (424)
 25 PRK09558 ushA bifunctional UDP  99.2 3.3E-09 8.4E-14   79.4  16.5  207    7-235    32-258 (551)
 26 PRK09419 bifunctional 2',3'-cy  99.2 5.2E-09 1.3E-13   78.1  16.4  262    6-290    39-343 (1260)
 27 COG0737 UshA 5'-nucleotidase/2  99.1 9.7E-09 2.5E-13   76.3  15.9  228    6-253    23-267 (517)
 28 PRK11907 bifunctional 2',3'-cy  99.1 1.4E-07 3.5E-12   68.7  19.4  256    6-288   112-415 (810)
 29 pfam09423 PhoD PhoD-like phosp  98.9 8.8E-07 2.2E-11   63.5  19.1  196   60-257   128-405 (450)
 30 PRK09419 bifunctional 2',3'-cy  98.9   6E-07 1.5E-11   64.5  17.5  205    6-253   662-916 (1260)
 31 COG1311 HYS2 Archaeal DNA poly  98.9 1.1E-07 2.9E-12   69.3  13.6  186   10-241   226-437 (481)
 32 COG4186 Predicted phosphoester  98.9 1.5E-07 3.9E-12   68.4  14.2  146    8-234     2-148 (186)
 33 KOG3662 consensus               98.7 1.9E-06 4.9E-11   61.2  13.9   95    7-112    46-147 (410)
 34 PRK09420 cpdB bifunctional 2',  98.5 1.5E-05 3.9E-10   55.3  15.4  208   67-287     1-248 (578)
 35 COG1407 Predicted ICC-like pho  98.5 6.4E-07 1.6E-11   64.3   8.0   90   10-111    20-112 (235)
 36 PHA02239 putative protein phos  98.5 5.3E-07 1.4E-11   64.9   7.4   71   10-110     1-74  (235)
 37 TIGR01390 CycNucDiestase 2',3'  98.5   2E-05 5.1E-10   54.5  14.7  263   10-291     3-307 (634)
 38 KOG3947 consensus               98.3 2.1E-05 5.4E-10   54.3  11.8  167   66-240    84-270 (305)
 39 PRK09968 serine/threonine-spec  98.2 2.9E-05 7.5E-10   53.4  11.3   66   11-110    16-82  (218)
 40 PRK13625 bis(5'-nucleosyl)-tet  98.2 5.1E-06 1.3E-10   58.4   6.6   70   10-109     1-79  (245)
 41 PRK11439 pphA serine/threonine  98.1 9.5E-06 2.4E-10   56.6   6.2   70    3-110    14-84  (218)
 42 PRK00166 apaH diadenosine tetr  98.0 1.3E-05 3.4E-10   55.7   6.2   68    9-109     1-69  (275)
 43 TIGR00024 SbcD_rel_arch phosph  98.0   1E-05 2.6E-10   56.4   5.5   86   11-111    16-114 (243)
 44 TIGR01530 nadN NAD nucleotidas  97.8  0.0019 4.9E-08   41.5  14.4  190   10-233     1-217 (550)
 45 pfam04042 DNA_pol_E_B DNA poly  97.6  0.0016 4.1E-08   42.0  10.7   76   12-110     1-89  (205)
 46 KOG4419 consensus               97.5  0.0024 6.2E-08   40.8  10.5  205   10-239    43-274 (602)
 47 KOG2863 consensus               97.4  0.0031 7.9E-08   40.1  10.7  176   57-245    20-242 (456)
 48 COG3540 PhoD Phosphodiesterase  97.4  0.0058 1.5E-07   38.3  12.0  183   56-240   160-424 (522)
 49 cd00144 PP2Ac Protein phosphat  97.2    0.02   5E-07   34.8  14.4  198   65-276    55-262 (269)
 50 COG5555 Cytolysin, a secreted   96.8   0.002 5.2E-08   41.3   4.7  165   65-234   127-334 (392)
 51 KOG3325 consensus               96.8   0.035   9E-07   33.2  11.0   97  186-298    78-178 (183)
 52 smart00156 PP2Ac Protein phosp  96.4   0.077   2E-06   30.9  12.4  197   66-277    56-261 (271)
 53 PTZ00244 serine/threonine-prot  96.0    0.12 3.1E-06   29.7  12.0  196   66-276    80-284 (294)
 54 PTZ00239 serine/threonine prot  96.0    0.13 3.2E-06   29.5  12.6   47   66-112    71-117 (303)
 55 KOG0374 consensus               95.4    0.16   4E-06   28.9   8.4  198   65-276    86-293 (331)
 56 pfam06874 FBPase_2 Firmicute f  95.2   0.014 3.5E-07   35.9   2.6   56   52-112   172-227 (641)
 57 smart00854 PGA_cap Bacterial c  95.1    0.26 6.6E-06   27.5  16.9  196   48-253    18-234 (239)
 58 TIGR00668 apaH bis(5'-nucleosy  94.6   0.032 8.2E-07   33.4   3.1   56   51-110    14-70  (280)
 59 pfam09587 PGA_cap Bacterial ca  92.9    0.68 1.7E-05   24.7  17.1  216   11-253     1-232 (237)
 60 COG1692 Calcineurin-like phosp  92.7    0.72 1.8E-05   24.5  19.7  164   52-237    18-183 (266)
 61 PRK10425 DNase TatD; Provision  92.0    0.89 2.3E-05   24.0  11.7  127   52-221    16-142 (258)
 62 PRK09982 universal stress prot  91.8    0.93 2.4E-05   23.8   9.8  110   67-233     5-114 (142)
 63 COG3855 Fbp Uncharacterized pr  91.4     0.2 5.2E-06   28.2   3.2   54   54-112   180-233 (648)
 64 KOG0371 consensus               91.0    0.84 2.1E-05   24.1   6.0   57   59-117    80-139 (319)
 65 PTZ00235 DNA polymerase epsilo  90.0     1.4 3.5E-05   22.7   7.6   75   11-109    29-122 (307)
 66 PRK04286 hypothetical protein;  89.2     1.2 3.1E-05   23.1   5.6   63  165-235   188-252 (294)
 67 TIGR02477 PFKA_PPi diphosphate  87.6       2   5E-05   21.7   7.0   62   42-107   146-208 (566)
 68 KOG3818 consensus               87.5       2 5.1E-05   21.6   7.3   83    4-112   279-372 (525)
 69 TIGR00486 TIGR00486 conserved   87.5     1.7 4.2E-05   22.2   5.4   64   48-111    52-118 (325)
 70 KOG0372 consensus               84.8     2.3 5.8E-05   21.3   5.0   47   66-112    71-117 (303)
 71 cd01825 SGNH_hydrolase_peri1 S  84.6     2.7   7E-05   20.7   5.3   98   11-109     1-108 (189)
 72 COG1168 MalY Bifunctional PLP-  84.5     2.5 6.4E-05   21.0   5.1   92  172-271   147-247 (388)
 73 cd01310 TatD_DNAse TatD like p  77.2     4.9 0.00013   19.0  13.6  128   52-222    16-143 (251)
 74 KOG4184 consensus               76.6     4.2 0.00011   19.5   4.0   49   46-94    220-270 (478)
 75 TIGR01422 phosphonatase phosph  74.8     5.7 0.00015   18.6   4.9   44   48-91    122-167 (199)
 76 TIGR02855 spore_yabG sporulati  73.8       3 7.6E-05   20.5   2.7   15  282-296   248-262 (292)
 77 COG2843 PgsA Putative enzyme o  73.0     6.3 0.00016   18.4   8.5   76  172-252   210-285 (372)
 78 TIGR00920 2A060605 3-hydroxy-3  72.7     4.4 0.00011   19.4   3.3   69    3-108   692-761 (988)
 79 TIGR00010 TIGR00010 hydrolase,  72.6     6.4 0.00016   18.3  12.8  137   52-228    19-165 (269)
 80 KOG0373 consensus               70.0     7.3 0.00019   17.9   5.1   47   64-112    71-120 (306)
 81 TIGR01368 CPSaseIIsmall carbam  69.7     6.1 0.00015   18.5   3.5   20   56-75    124-144 (383)
 82 PRK10116 universal stress prot  68.2       8  0.0002   17.7   6.3   37   67-104     5-41  (142)
 83 PRK05421 hypothetical protein;  67.6     8.2 0.00021   17.6   5.5   53  169-232   158-210 (254)
 84 TIGR02961 allantoicase allanto  65.8     6.3 0.00016   18.3   2.9   16  272-287   178-193 (376)
 85 TIGR00504 pyro_pdase pyrrolido  65.4     7.2 0.00018   18.0   3.2   29   47-75     43-71  (220)
 86 COG2248 Predicted hydrolase (m  61.2      11 0.00027   16.8   6.0   63  165-235   187-252 (304)
 87 cd01985 ETF The electron trans  60.8      11 0.00028   16.8   5.0   52  174-233    51-102 (181)
 88 KOG0376 consensus               59.6      11 0.00029   16.7   7.9  189   67-277   244-448 (476)
 89 cd07366 3MGA_Dioxygenase Subun  57.7      10 0.00026   17.0   2.8   27   47-73     69-95  (328)
 90 PRK13363 protocatechuate 4,5-d  56.9     9.8 0.00025   17.1   2.6   26   48-73     72-97  (335)
 91 pfam02350 Epimerase_2 UDP-N-ac  55.3      13 0.00034   16.2   5.4   48   50-105    53-100 (346)
 92 TIGR02539 SepCysS Sep-tRNA:Cys  54.8      14 0.00035   16.1   4.7   50  174-229   133-185 (381)
 93 TIGR02329 propionate_PrpR prop  54.8      14 0.00035   16.1   3.1   45  212-256   329-391 (658)
 94 pfam01026 TatD_DNase TatD rela  54.5      14 0.00035   16.1  14.4  131   53-222    16-146 (255)
 95 KOG2732 consensus               53.7      14 0.00036   16.0   6.4  173   65-256   218-414 (435)
 96 pfam01784 NIF3 NIF3 (NGG1p int  53.1      15 0.00037   16.0   5.2   62   50-111    39-103 (238)
 97 PRK11449 putative deoxyribonuc  52.8      15 0.00037   15.9  10.7  130   52-222    20-149 (258)
 98 TIGR00639 PurN phosphoribosylg  51.4      15 0.00037   16.0   2.8   14   53-66     14-29  (215)
 99 cd00758 MoCF_BD MoCF_BD: molyb  50.5      16 0.00041   15.7   4.9   11   65-75     59-69  (133)
100 TIGR03568 NeuC_NnaA UDP-N-acet  50.4      16 0.00041   15.7   5.9   25   51-75     80-104 (365)
101 COG0381 WecB UDP-N-acetylgluco  49.9      16 0.00042   15.6   3.3   28   48-75     76-103 (383)
102 KOG0375 consensus               48.2      16  0.0004   15.8   2.5   19   92-110   142-160 (517)
103 pfam07819 PGAP1 PGAP1-like pro  46.6      18 0.00047   15.3   3.6   16   95-110     3-18  (225)
104 cd02991 UAS_ETEA UAS family, E  46.6      18 0.00047   15.3   3.7   45  176-220     7-51  (116)
105 PRK13670 hypothetical protein;  46.4      18 0.00047   15.3   4.1   27   57-83     21-50  (390)
106 PRK13671 hypothetical protein;  46.3      18 0.00047   15.3   4.1   32   57-88     20-54  (298)
107 COG0434 SgcQ Predicted TIM-bar  45.5      19 0.00049   15.2   4.7   59   48-107    28-97  (263)
108 cd02065 B12-binding_like B12 b  43.2      21 0.00053   15.0   5.6   52   53-108    39-90  (125)
109 pfam03437 BtpA BtpA family. Th  42.2      21 0.00054   14.9   5.5   72   15-102     6-88  (254)
110 PRK10834 hypothetical protein;  42.2      21 0.00054   14.9   5.0   54   43-97     60-113 (239)
111 COG0084 TatD Mg-dependent DNas  41.5      22 0.00056   14.8  13.6  138   53-231    19-158 (256)
112 COG3931 Predicted N-formylglut  40.9      14 0.00035   16.1   1.3   19   98-116   101-119 (263)
113 TIGR00633 xth exodeoxyribonucl  40.2      23 0.00058   14.7   3.2   22   49-70     11-34  (279)
114 KOG2476 consensus               39.6      23  0.0006   14.6  12.6  164   52-231    21-196 (528)
115 pfam08413 Metallophos_C Calcin  39.5      23  0.0006   14.6   3.0   32  245-281     2-33  (38)
116 cd03522 MoeA_like MoeA_like. T  39.2      24  0.0006   14.6   2.8   49  212-260   182-235 (312)
117 TIGR01307 pgm_bpd_ind 2,3-bisp  38.8      24 0.00061   14.5   4.6   27  212-239   435-461 (529)
118 PRK10799 putative hydrolase-ox  37.2      25 0.00065   14.4   4.5   62   48-109    40-103 (247)
119 cd00765 Pyrophosphate_PFK Phos  36.9      26 0.00066   14.3   7.1   59   41-103   143-202 (550)
120 pfam05636 DUF795 Protein of un  36.8      26 0.00066   14.3   4.1   27   57-83     21-50  (389)
121 cd03786 GT1_UDP-GlcNAc_2-Epime  35.8      27 0.00068   14.2   5.9   27   50-76     74-100 (363)
122 KOG1099 consensus               35.7      27 0.00069   14.2   5.3   11   67-77     91-101 (294)
123 PRK13195 pyrrolidone-carboxyla  35.3      27 0.00069   14.2   3.2   27   48-74     45-71  (222)
124 PRK09275 aspartate aminotransf  34.3      28 0.00072   14.1   3.6   49  177-228   236-284 (531)
125 KOG0092 consensus               34.2      28 0.00072   14.1   4.8   42   63-107    76-120 (200)
126 cd02172 RfaE_N RfaE is a prote  34.1      28 0.00072   14.1   5.0   17  216-232    81-97  (143)
127 PRK11930 putative bifunctional  32.9      30 0.00076   13.9   5.6   50   43-92    338-391 (824)
128 PRK05647 purN phosphoribosylgl  32.0      31 0.00078   13.8   2.9   11   53-63     15-25  (200)
129 PRK13539 cytochrome c biogenes  31.8      31 0.00079   13.8   3.4   30  168-197   158-187 (206)
130 TIGR02471 sucr_syn_bact_C sucr  31.4      24 0.00061   14.5   1.3   41   50-98     15-59  (241)
131 COG0123 AcuC Deacetylases, inc  31.2      32 0.00081   13.7   6.1   14  214-227   231-244 (340)
132 pfam05582 Peptidase_U57 YabG p  30.4      33 0.00083   13.7   5.5   16  170-185   141-156 (287)
133 PRK07085 diphosphate--fructose  29.9      33 0.00085   13.6   6.7   60   42-105   144-204 (557)
134 pfam08497 Radical_SAM_N Radica  28.8      35 0.00089   13.5   3.8   48   63-111    15-85  (298)
135 COG2039 Pcp Pyrrolidone-carbox  28.7      35 0.00089   13.5   3.2   28   48-75     44-71  (207)
136 COG4607 CeuA ABC-type enteroch  28.4      35  0.0009   13.4   2.3   22   52-73    106-127 (320)
137 PRK13193 pyrrolidone-carboxyla  28.3      35  0.0009   13.4   3.3   28   48-75     44-71  (201)
138 COG0299 PurN Folate-dependent   27.6      36 0.00093   13.3   3.7   18   56-73     71-88  (200)
139 pfam06925 MGDG_synth Monogalac  27.5      37 0.00093   13.3   2.9   28   54-81      6-34  (169)
140 cd00887 MoeA MoeA family. Memb  27.2      37 0.00094   13.3   4.6   42  212-253   250-291 (394)
141 TIGR00195 exoDNase_III exodeox  26.8      38 0.00096   13.3   2.9   21   50-70     12-34  (281)
142 cd00363 PFK Phosphofructokinas  26.7      38 0.00096   13.2   6.3   56   49-108    77-133 (338)
143 PRK13196 pyrrolidone-carboxyla  26.1      39 0.00098   13.2   3.3   27   48-74     46-72  (212)
144 TIGR02082 metH methionine synt  26.1      39 0.00099   13.2   5.6   74  142-231   224-306 (1265)
145 cd06533 Glyco_transf_WecG_TagA  26.0      39 0.00099   13.2   6.4   16   49-64     31-46  (171)
146 pfam02310 B12-binding B12 bind  26.0      39 0.00099   13.2   6.1   21   54-74     41-61  (121)
147 COG2949 SanA Uncharacterized m  26.0      39 0.00099   13.2   4.7   35   44-78     73-107 (235)
148 pfam08981 consensus             25.8      39   0.001   13.1   6.2   26   46-71      7-32  (181)
149 PRK10360 DNA-binding transcrip  25.8      39   0.001   13.1   4.9   48   53-107    36-83  (196)
150 COG3981 Predicted acetyltransf  25.7      39   0.001   13.1   4.0   22  173-194   117-138 (174)
151 pfam02698 DUF218 DUF218 domain  25.4      40   0.001   13.1   5.3   47   51-97     17-63  (148)
152 TIGR02685 pter_reduc_Leis pter  25.3      40   0.001   13.1   3.3   33   46-78     32-65  (283)
153 TIGR02482 PFKA_ATP 6-phosphofr  25.3      40   0.001   13.1   6.0   51   49-108    76-127 (302)
154 cd07359 PCA_45_Doxase_B_like S  25.0      40   0.001   13.0   3.4   26   48-73     28-53  (271)
155 cd01820 PAF_acetylesterase_lik  25.0      40   0.001   13.0   5.6   27   51-78     19-46  (214)
156 PRK13307 bifunctional formalde  24.6      41  0.0011   13.0   4.8   12  245-256   330-341 (392)
157 cd06259 YdcF-like YdcF-like. Y  24.5      41  0.0011   13.0   5.4   48   49-96     19-66  (150)
158 cd01743 GATase1_Anthranilate_S  24.4      42  0.0011   13.0   4.7   12   60-71     38-49  (184)
159 PTZ00099 rab6; Provisional      24.4      42  0.0011   13.0   4.0   44   61-108    49-96  (176)
160 cd07033 TPP_PYR_DXS_TK_like Py  24.3      42  0.0011   13.0   4.0   26   54-79      4-29  (156)
161 TIGR02495 NrdG2 anaerobic ribo  24.2      42  0.0011   12.9   4.3   44   46-94     43-89  (220)
162 smart00594 UAS UAS domain.      24.2      42  0.0011   12.9   3.6   54  176-232    17-70  (122)
163 pfam10686 DUF2493 Protein of u  23.9      42  0.0011   12.9   3.5   41   50-94     17-57  (71)
164 TIGR01284 alt_nitrog_alph nitr  23.8      43  0.0011   12.9   4.6   48  210-267   394-441 (468)
165 cd02812 PcrB_like PcrB_like pr  23.8      43  0.0011   12.9   6.2   52   56-110    17-68  (219)
166 TIGR01264 tyr_amTase_E tyrosin  23.7      43  0.0011   12.9   7.4  104  169-276   160-272 (415)
167 PRK05670 anthranilate synthase  23.7      43  0.0011   12.9   4.9   14   58-71     37-50  (192)
168 COG3426 Butyrate kinase [Energ  23.3      44  0.0011   12.8   4.1   23   53-75     52-79  (358)
169 pfam04587 ADP_PFK_GK ADP-speci  23.2      44  0.0011   12.8   3.3   54   48-101   191-255 (444)
170 PRK13538 cytochrome c biogenes  23.2      44  0.0011   12.8   3.9   11   14-24     16-26  (204)
171 cd04121 Rab40 Rab40 subfamily.  22.9      44  0.0011   12.8   3.3   41   63-107    77-120 (189)
172 TIGR02817 adh_fam_1 zinc-bindi  22.6      45  0.0011   12.7   3.1   36   59-94     78-114 (338)
173 pfam03841 SelA L-seryl-tRNA se  22.5      41   0.001   13.0   1.1   18  166-183   243-260 (367)
174 TIGR02845 spore_V_AD stage V s  22.1      46  0.0012   12.7   4.1   86  160-258   195-283 (331)
175 TIGR01214 rmlD dTDP-4-dehydror  22.0      46  0.0012   12.7   2.6   66   47-112    43-116 (317)
176 TIGR01957 nuoB_fam NADH-quinon  22.0      46  0.0012   12.7   3.7   39   63-107    56-95  (146)
177 PRK00955 hypothetical protein;  21.9      46  0.0012   12.6   3.7   47   63-110    12-81  (599)
178 cd04124 RabL2 RabL2 subfamily.  21.8      47  0.0012   12.6   3.9   13   64-76     72-84  (161)
179 cd02067 B12-binding B12 bindin  21.7      47  0.0012   12.6   6.7   49   53-104    39-88  (119)
180 PRK09191 two-component respons  21.6      47  0.0012   12.6   5.3   18  211-228   171-188 (261)
181 TIGR02398 gluc_glyc_Psyn gluco  21.3      48  0.0012   12.6   1.9   15  188-202   160-174 (495)
182 TIGR02875 spore_0_A sporulatio  21.3      48  0.0012   12.6   2.6   20   55-76     39-58  (270)
183 PRK05637 anthranilate synthase  21.2      48  0.0012   12.6   4.0   14   59-72     39-52  (208)
184 KOG3873 consensus               21.1      48  0.0012   12.5   3.7   24  170-193   154-177 (422)
185 PRK13197 pyrrolidone-carboxyla  21.1      48  0.0012   12.5   3.2   24   49-72     46-69  (215)
186 PRK13194 pyrrolidone-carboxyla  21.0      48  0.0012   12.5   3.4   28   48-75     44-71  (204)
187 cd07372 2A5CPDO_B The beta sub  20.9      49  0.0012   12.5   3.3   21   51-71     37-57  (294)
188 cd04118 Rab24 Rab24 subfamily.  20.8      49  0.0012   12.5   4.4   43   62-108    71-116 (193)
189 PRK04311 selenocysteine syntha  20.7      46  0.0012   12.7   1.1   14  168-181   327-340 (465)
190 COG0327 Uncharacterized conser  20.6      49  0.0013   12.5   4.5   66   47-112    40-108 (250)
191 TIGR02080 O_succ_thio_ly O-suc  20.6      49  0.0013   12.5  12.1   81   15-112    23-103 (383)
192 cd02072 Glm_B12_BD B12 binding  20.5      49  0.0013   12.5   6.4   40   54-95     40-79  (128)
193 CHL00101 trpG anthranilate syn  20.5      50  0.0013   12.5   4.4   12   61-72     40-51  (190)
194 pfam00551 Formyl_trans_N Formy  20.0      51  0.0013   12.4   2.6   13   96-108    27-39  (181)

No 1  
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=100.00  E-value=3.8e-36  Score=256.66  Aligned_cols=239  Identities=14%  Similarity=0.128  Sum_probs=182.0

Q ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCC--CCEEEECCCCCCCCCHHHH
Q ss_conf             55327889941114278854100022210001210000012330899999999996269--9799993744448998999
Q gi|255764495|r    6 TTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHN--VDHVSITGDIVNFTCNREI   83 (309)
Q Consensus         6 ~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~--pD~vvitGDl~~~~~~~~~   83 (309)
                      +..| ||+||||+||...+...                .......+.|+++++.+++..  ||+||+||||++.|.+++|
T Consensus        12 ~~~m-kiiQISD~HL~~~~~~~----------------~~g~dt~~~l~~vl~~i~~~~~~~D~viiTGDLs~dgs~esY   74 (275)
T PRK11148         12 EARV-RILQITDTHLFADEHET----------------LLGVNTWESYQAVLEAIRAEQHEFDLIVATGDLAQDHSAEAY   74 (275)
T ss_pred             CCCE-EEEEEECCCCCCCCCCC----------------CCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHH
T ss_conf             9877-99998367758788763----------------527698999999999998459998899976402589999999


Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf             99999998618997189994588422220356766432454313444445556212799719879998328888887554
Q gi|255764495|r   84 FTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSA  163 (309)
Q Consensus        84 ~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~  163 (309)
                      +.+.++++++  +.|++++|||||...  .+       ...+....     ......+...+++.+++|||....   ..
T Consensus        75 ~~l~~~L~~l--~~P~~~lPGNHD~~~--~m-------~~~l~~~~-----~~~~~~v~~~~~w~iI~LDS~~~g---~~  135 (275)
T PRK11148         75 QHFAEGIAPL--RKPCVWLPGNHDFQP--AM-------YSALQDAG-----ISPAKHVLIGEHWQILLLDSQVFG---VP  135 (275)
T ss_pred             HHHHHHHHHC--CCCEEEECCCCCCHH--HH-------HHHHCCCC-----CCCCCEEEECCCEEEEEEECCCCC---CC
T ss_conf             9999999726--999899588762389--99-------98603266-----786532796498799999799999---77


Q ss_pred             CCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCC--CCCCHHHHHHHHHHC-CCEEEEECCCCCCEEEEEE
Q ss_conf             7600899999999998524336970899983768887643110--127978999999874-9819999876753247871
Q gi|255764495|r  164 NGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYN--RMFGIQRFQKMIWHE-GADLILHGHTHLNSLHWIK  240 (309)
Q Consensus       164 ~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~--~~~~~~~l~~~l~~~-~v~lvl~GH~H~~~~~~~~  240 (309)
                      .|.++++|++||++.|++.+.  ++.+|++||||+.....|.+  .+.|+++|.++++++ +|..|+|||+|+.....+.
T Consensus       136 ~G~L~~~qL~wL~~~L~~~~~--~~~lV~lHHpPv~ig~~wmD~~~L~N~~~l~~il~~~~~Vk~v~~GHvHq~~~~~~~  213 (275)
T PRK11148        136 HGELSEFQLEWLERKLADAPE--RHTLVLLHHHPLPAGSAWLDQHSLRNAHELAQVLAKFPNVKAILCGHIHQELDLDWN  213 (275)
T ss_pred             CCEECHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHEEC
T ss_conf             708399999999999974789--987999927984579832001118799999999974899049996265756770699


Q ss_pred             CCCCCEEEEEECCCCCCCCCC-------CCCCCEEEEEEECCCCEEEEEEEEEE
Q ss_conf             699868999957623577888-------87785489999538983899999951
Q gi|255764495|r  241 NEKKLIPVVGIASASQKVHSN-------KPQASYNLFYIEKKNEYWTLEGKRYT  287 (309)
Q Consensus       241 ~~~~~~~~~~~~s~~~~~~~~-------~~~~~y~li~i~~~~~~~~v~~~r~~  287 (309)
                      +    +++++|||+|..+...       ...+||+.+++.++| .+.-.+.|..
T Consensus       214 g----i~~~~tPSTc~QF~p~s~~f~~d~~~PGyR~l~L~~dG-~~~t~V~Rv~  262 (275)
T PRK11148        214 G----RRLLATPSTCVQFKPHCDNFTLDTIAPGWRELELHADG-SLETEVHRLA  262 (275)
T ss_pred             C----EEEEECCCCCEEECCCCCCCCCCCCCCCEEEEEECCCC-CEEEEEEECC
T ss_conf             9----99997487211146799875404889970799974899-5898999826


No 2  
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.96  E-value=2e-26  Score=192.73  Aligned_cols=230  Identities=22%  Similarity=0.275  Sum_probs=159.2

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             78899411142788541000222100012100000123308999999999962699799993744448998999999999
Q gi|255764495|r   10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHW   89 (309)
Q Consensus        10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~   89 (309)
                      +||+||||+|+++                      ........++++++.++..+||+||+||||++.|.+++++.+.++
T Consensus         1 ~~i~~isD~H~~~----------------------~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~~~~~~~~~~~   58 (301)
T COG1409           1 MRIAHISDLHLGA----------------------LGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGEPEEYRRLKEL   58 (301)
T ss_pred             CEEEEEECCCCCC----------------------CCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf             9689981688774----------------------556558999999997366799989988746566665899999999


Q ss_pred             HHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEC-CCEEEEEECCCCCCCCCCCCCEEC
Q ss_conf             9861899718999458842222035676643245431344444555621279971-987999832888888755476008
Q gi|255764495|r   90 LRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIR-NNIALIGCSTAIATPPFSANGYFG  168 (309)
Q Consensus        90 ~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~s~~~~~~~~~~g~~~  168 (309)
                      ++.+..+.|++++|||||.+...........+..+...            ..... +++.++++|+....   ...|+++
T Consensus        59 l~~~~~~~~~~~vpGNHD~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~d~~~~~---~~~G~~~  123 (301)
T COG1409          59 LARLELPAPVIVVPGNHDARVVNGEAFSDQFFNRYAVL------------VGACSSGGWRVIGLDSSVPG---VPLGRLG  123 (301)
T ss_pred             HHHCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCHHH------------CCCCCCCCEEEEEECCCCCC---CCCCEEC
T ss_conf             97467788758638985454444322311014553010------------10223786699973156567---7687735


Q ss_pred             HHHHHHHHHHHHHCCCCCC-EEEEEEECCCCCC-CCCCCCCCCCHHHHHHHHHHCC--CEEEEECCCCCC--EEEEEECC
Q ss_conf             9999999999852433697-0899983768887-6431101279789999998749--819999876753--24787169
Q gi|255764495|r  169 QEQAHATSKLLRKANKKGF-FRIIMMHHPPVLD-TSSLYNRMFGIQRFQKMIWHEG--ADLILHGHTHLN--SLHWIKNE  242 (309)
Q Consensus       169 ~~q~~~l~~~L~~~~~~~~-~~iv~~Hhpp~~~-~~~~~~~~~~~~~l~~~l~~~~--v~lvl~GH~H~~--~~~~~~~~  242 (309)
                      ..|+.|+++.|+....... ..++++|||+... .......+.++..+..++..++  ++++|+||.|..  ......+.
T Consensus       124 ~~q~~~l~~~l~~~~~~~~~~~v~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~  203 (301)
T COG1409         124 AEQLDWLEEALAAAPERAKDTVVVLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLAAQTVYQLNGT  203 (301)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf             88899999997752012564069984478777776401344324334456776447841499969744554112212674


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             9868999957623577888877854899995389
Q gi|255764495|r  243 KKLIPVVGIASASQKVHSNKPQASYNLFYIEKKN  276 (309)
Q Consensus       243 ~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~  276 (309)
                      ......+.+++++...........++.++++..+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (301)
T COG1409         204 RLSDLLVGAGPATCSQVFRGSATAFNTLDLDGPG  237 (301)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf             2332120025643203356664321026760686


No 3  
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.90  E-value=4.4e-22  Score=164.11  Aligned_cols=168  Identities=20%  Similarity=0.226  Sum_probs=107.8

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             78899411142788541000222100012100000123308999999999962699799993744448998999999999
Q gi|255764495|r   10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHW   89 (309)
Q Consensus        10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~   89 (309)
                      +||+||||+|+|..                        .....++.+++.+++++||+|+++||+++...+.++..+.+.
T Consensus        49 lrI~~lSDlH~g~~------------------------~~~~~l~~~v~~~n~~~PDlVv~tGD~vd~~~~~~~~~~~~~  104 (270)
T PRK11340         49 FKILFLADLHYSRF------------------------VPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFSDV  104 (270)
T ss_pred             CEEEEEECCCCCCC------------------------CCHHHHHHHHHHHHHCCCCEEEECCCEECCCCCHHHHHHHHH
T ss_conf             58999925668898------------------------898999999999871299999986763447772107999999


Q ss_pred             HHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEECH
Q ss_conf             98618997189994588422220356766432454313444445556212799719879998328888887554760089
Q gi|255764495|r   90 LRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQ  169 (309)
Q Consensus        90 ~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~  169 (309)
                      +++|..+.|+|+|.||||.+..........   +.+....-.....+..........+.++|++..+....       ..
T Consensus       105 l~~L~~~~gvyaVlGNHD~~~~~~~~~~i~---~~l~~~Gi~vL~N~~~~i~~~~~~~~l~Gv~D~~~~~~-------~~  174 (270)
T PRK11340        105 LSPLAECAPTFACFGNHDRPVGTEKNHLIG---ETLKSAGITVLFNQATVIATPNRQFELVGTGDLWAGQC-------KP  174 (270)
T ss_pred             HHHCCCCCCEEEECCCCCCCCCCCCHHHHH---HHHHHCCCEEEECCEEEEEECCEEEEEEECCCHHHCCC-------CC
T ss_conf             874013388599737864224542069999---99997799892088299975993999996276465556-------67


Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEE
Q ss_conf             99999999985243369708999837688876431101279789999998749819999876753247
Q gi|255764495|r  170 EQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLH  237 (309)
Q Consensus       170 ~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~  237 (309)
                      .          ....++.++|++.|.|-.                .+.+.+.++|++||||+|..|+.
T Consensus       175 ~----------~~~~~~~p~IlL~H~P~~----------------~~~~~~~~~dL~LSGHTHGGQi~  216 (270)
T PRK11340        175 P----------PASEANLPRLVLAHNPDS----------------KEVMRDEPWDLMLCGHTHGGQLR  216 (270)
T ss_pred             C----------CCCCCCCCEEEEEECCCC----------------HHHCCCCCCCEEEEECCCCCEEE
T ss_conf             6----------121468986999818982----------------34435568557997237788798


No 4  
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=99.89  E-value=6.3e-21  Score=156.53  Aligned_cols=246  Identities=18%  Similarity=0.197  Sum_probs=128.1

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH--HHHHHH
Q ss_conf             788994111427885410002221000121000001233089999999999626997999937444489989--999999
Q gi|255764495|r   10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNR--EIFTST   87 (309)
Q Consensus        10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~--~~~~~~   87 (309)
                      -||+|+||+|||..-..                ..+.+....+|+++++.+.+++||+|+|+||+++.+.|.  ..+.+.
T Consensus         1 MkiLHTSDWHLGk~l~g----------------~sr~~eq~~fL~~l~~~~~~e~vDavlIAGDifD~~~P~~~A~~l~~   64 (402)
T PRK10966          1 MRILHTSDWHLGQNFYS----------------KSRAAEHQAFLDWLLEQAQEHQVDAIIVAGDIFDTGSPPSYARELYN   64 (402)
T ss_pred             CCEEEHHHHHCCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHH
T ss_conf             95076103343821489----------------78299999999999999998499999988755799999999999999


Q ss_pred             HHHHHHCC-CCCEEEEECCCCCCCCCHHHHHH-HHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCC---CC
Q ss_conf             99986189-97189994588422220356766-432454313444445556212799719879998328888887---55
Q gi|255764495|r   88 HWLRSIGN-PHDISIVPGNHDAYISGAKEKSL-HAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPP---FS  162 (309)
Q Consensus        88 ~~~~~l~~-~~~v~~v~GNHD~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~---~~  162 (309)
                      +++.+|.. .++++++.||||...+......+ ....-+..+.................+.+.++.+--....+.   ..
T Consensus        65 ~fl~~l~~~~~~vvvIaGNHDS~~rL~~~~~ll~~~~~~v~~~~~~~~~~~~i~l~~~~G~~~~~~~alPyl~p~~~~~~  144 (402)
T PRK10966         65 RFVVNLQQTGCQLVVLAGNHDSVATLNESRDLLAFLNTTVIASASDDLGHQVIILPRRDGTPGAVLCAIPFLRPRDVITS  144 (402)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCHHHHHCCHHHHHHCCEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCCHHHHHHH
T ss_conf             99999996699689994798987776243657886786997035656666429985599877689997798998996532


Q ss_pred             CCCEECHH-HH----------HHHHH---HHHHCCCCCCEEEEEEECCCCCCCCCCCCC---CCCHHHHH-HHHHHCCCE
Q ss_conf             47600899-99----------99999---985243369708999837688876431101---27978999-999874981
Q gi|255764495|r  163 ANGYFGQE-QA----------HATSK---LLRKANKKGFFRIIMMHHPPVLDTSSLYNR---MFGIQRFQ-KMIWHEGAD  224 (309)
Q Consensus       163 ~~g~~~~~-q~----------~~l~~---~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~---~~~~~~l~-~~l~~~~v~  224 (309)
                      ..|.-..+ +.          ..+.+   .+......+.+.|++.|-.........+.+   .-+.+.+- +++  .+++
T Consensus       145 ~~g~~~~~~~~~l~~~i~~~~~~~~~~a~~~~~~~~~~~p~i~~~Hl~~~G~~~sdSeR~i~vGg~~~v~~~~f--~~~d  222 (402)
T PRK10966        145 QAGLSGIEKQQALQQAIADHYQQLYQLACELRDALGQPLPIIATGHLTTVGASKSDSVRDIYIGTLDAFPAQAF--PPAD  222 (402)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHC--CCCC
T ss_conf             04777115899999999999999999999986311457756999730542776577624688878240568677--9878


Q ss_pred             EEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf             99998767532478716998689999576235778888778548999953898
Q gi|255764495|r  225 LILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKNE  277 (309)
Q Consensus       225 lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~~  277 (309)
                      ++..||+|+++..   +....+.+.|+| ...++...+..+++.++++++++.
T Consensus       223 YvALGHlH~pQ~v---~~~~~irYSGSP-l~~sFsE~~~~K~v~lVd~~~~~~  271 (402)
T PRK10966        223 YIALGHIHRAQKV---GGTEHIRYCGSP-IPLSFDELGKSKSVHLVEFDQGKL  271 (402)
T ss_pred             EEECCCCCCCCCC---CCCCCEEECCCC-CCCCCCCCCCCCEEEEEEECCCCC
T ss_conf             7635776665606---899867976985-523533246765599999779984


No 5  
>KOG3770 consensus
Probab=99.85  E-value=5.5e-19  Score=143.74  Aligned_cols=264  Identities=18%  Similarity=0.145  Sum_probs=180.9

Q ss_pred             CEEEEEEEECCCCCCCCCCCCCC---------------CCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCC--CCEEEE
Q ss_conf             32788994111427885410002---------------2210001210000012330899999999996269--979999
Q gi|255764495|r    8 IMFVLAHISDIHLSYSPSFFELS---------------PKRIIGLVNWHFNRKKYFSKEVANLLINDILLHN--VDHVSI   70 (309)
Q Consensus         8 ~m~ri~hlSDlHlg~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~--pD~vvi   70 (309)
                      ..+|++||+|+|.-+........               ...-.++.-|-.++.+..+...++++++.|++..  +|+|+.
T Consensus       137 p~~rvlhltDiH~D~~Y~~gs~a~c~~p~ccr~s~~~p~~~~~~Ag~wG~y~~CD~P~~lies~L~~ike~~~~iD~I~w  216 (577)
T KOG3770         137 PTFRVLHLTDIHLDPDYSEGSDADCDCPMCCRNSDGTPSGTKVAAGPWGDYGKCDSPKRLIESALDHIKENHKDIDYIIW  216 (577)
T ss_pred             CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             74158985125557540247763446752113578888876566788887677888899999999999851899877997


Q ss_pred             CCCCCCCCCH--------HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCH---------------HHHHHHHHHHHHCC
Q ss_conf             3744448998--------999999999986189971899945884222203---------------56766432454313
Q gi|255764495|r   71 TGDIVNFTCN--------REIFTSTHWLRSIGNPHDISIVPGNHDAYISGA---------------KEKSLHAWKDYITS  127 (309)
Q Consensus        71 tGDl~~~~~~--------~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~---------------~~~~~~~~~~~~~~  127 (309)
                      |||+...-..        +......+.+.+.....|||...||||......               .+.....|..|...
T Consensus       217 TGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~~~~~wly~~~~~~W~~wlp~  296 (577)
T KOG3770         217 TGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKRHSQLWLYKHLAGAWSTWLPA  296 (577)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCH
T ss_conf             18987664123449899999999999999868998546610268777574448987763001257899998651045898


Q ss_pred             CCCCCCCCCCCEEEEECCCEEEEEECCCCCC---CCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf             4444455562127997198799983288888---8755476008999999999985243369708999837688876431
Q gi|255764495|r  128 DTTCSTGKKLFPYLRIRNNIALIGCSTAIAT---PPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSL  204 (309)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~---~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~  204 (309)
                      ..........++.....++.++|.||+....   .+..........|++|+..+|..++.+|..+-++.|.||.......
T Consensus       297 e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae~~GekVhil~HIPpG~~~c~~  376 (577)
T KOG3770         297 EAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAESAGEKVHILGHIPPGDGVCLE  376 (577)
T ss_pred             HHHHHHHCCCEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHH
T ss_conf             88744442727998616872599850401155450243257895677669999999998669879999743898853312


Q ss_pred             CCCCCCHHHHHHHHHHCC--CEEEEECCCCCCEEEEEECCCCCEEE-EEECCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             101279789999998749--81999987675324787169986899-9957623577888877854899995389
Q gi|255764495|r  205 YNRMFGIQRFQKMIWHEG--ADLILHGHTHLNSLHWIKNEKKLIPV-VGIASASQKVHSNKPQASYNLFYIEKKN  276 (309)
Q Consensus       205 ~~~~~~~~~l~~~l~~~~--v~lvl~GH~H~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~y~li~i~~~~  276 (309)
                      .+    +..+-.++.++.  +...+.||+|..++..+..+....|. +...+++..+ .....++|.+..+++..
T Consensus       377 ~w----s~~f~~iv~r~~~tI~gqf~GH~h~d~f~v~yde~~~~p~~v~~i~~svtt-y~~~~p~yr~y~~~~~~  446 (577)
T KOG3770         377 GW----SINFYRIVNRFRSTIAGQFYGHTHIDEFRVFYDEETGHPIAVAYIGPSVTT-YYNKNPGYRIYAVDSTI  446 (577)
T ss_pred             HH----HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEECCCCCEE-HHCCCCCCEECCCCCCC
T ss_conf             21----688999999998766642026676403799961456773011002554102-10048874102347655


No 6  
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=99.84  E-value=4.2e-19  Score=144.50  Aligned_cols=245  Identities=18%  Similarity=0.134  Sum_probs=128.7

Q ss_pred             EEEEEEECCCCCC-CCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCH--HHHHHH
Q ss_conf             7889941114278-8541000222100012100000123308999999999962699799993744448998--999999
Q gi|255764495|r   10 FVLAHISDIHLSY-SPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCN--REIFTS   86 (309)
Q Consensus        10 ~ri~hlSDlHlg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~--~~~~~~   86 (309)
                      .||+|+||+|||. ....                ..+.......++.+++.+.++++|+||++||+++.+.|  .....+
T Consensus         1 mkilHtSD~HLG~~~~~~----------------~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~   64 (390)
T COG0420           1 MKILHTSDWHLGSKQLNL----------------PSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLF   64 (390)
T ss_pred             CEEEEECCCCCCCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHH
T ss_conf             907996003678433567----------------1358999999999999999706999998155578899998999999


Q ss_pred             HHHHHHHCC-CCCEEEEECCCCCCCCCHHHHHHH---HHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCC-C
Q ss_conf             999986189-971899945884222203567664---32454313444445556212799719879998328888887-5
Q gi|255764495|r   87 THWLRSIGN-PHDISIVPGNHDAYISGAKEKSLH---AWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPP-F  161 (309)
Q Consensus        87 ~~~~~~l~~-~~~v~~v~GNHD~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~-~  161 (309)
                      .++++.|.. .+|||+++||||............   ..........  .......+ ... ...+++....  .... .
T Consensus        65 ~~~l~~l~~~~Ipv~~I~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~-~~~~l~~~~~--~~~~~~  138 (390)
T COG0420          65 LEALRRLKDAGIPVVVIAGNHDSPSRLSEASPLLLLNNLGLHGVVGR--LVHEIRPP-EIV-AAPWLIPGPD--PDVVFF  138 (390)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHCCCCEEECCC--CCCCCCCC-CCC-CCEEEEECCC--CCEEEE
T ss_conf             99999875469828997278986012643352466751685020464--30012455-334-5439960377--650576


Q ss_pred             CCCCEECHHHHHHH--HHHHHHCCCCCCEEEEEEECCCC--CCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEE
Q ss_conf             54760089999999--99985243369708999837688--876431101279789999998749819999876753247
Q gi|255764495|r  162 SANGYFGQEQAHAT--SKLLRKANKKGFFRIIMMHHPPV--LDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLH  237 (309)
Q Consensus       162 ~~~g~~~~~q~~~l--~~~L~~~~~~~~~~iv~~Hhpp~--~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~  237 (309)
                      .........+...+  ...+.....+..+.|++.|--..  .........+ +... .+.+...+.+++..||+|.++..
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~YvALGHiH~~~~~  216 (390)
T COG0420         139 LGLNGLEKEQFELLLHKGLLSALDPDDDPSILVLHQSIDALTSGAERDLAL-GTVD-LSLLPKGGFDYVALGHIHKRQVI  216 (390)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCC-CCCC-CCCCCCCCCCEEECCCCCCCCEE
T ss_conf             123664177899987566665417656675663102121245677566521-3101-02266788556976888764000


Q ss_pred             EEECCCCCEEEEEECCCC-CCCCCCCCCCCEEEEEEECCCCEEEEEE
Q ss_conf             871699868999957623-5778888778548999953898389999
Q gi|255764495|r  238 WIKNEKKLIPVVGIASAS-QKVHSNKPQASYNLFYIEKKNEYWTLEG  283 (309)
Q Consensus       238 ~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~y~li~i~~~~~~~~v~~  283 (309)
                      ..    ...+++..||.- ..+...+...++.+++++.+. .|.+..
T Consensus       217 ~~----~~~~i~y~GS~~~~~f~E~~~~k~~~~v~~~~~~-~~~~~~  258 (390)
T COG0420         217 PK----EDPPIVYPGSPERYSFGEEGERKGVVLVEFSGGK-LWRFEE  258 (390)
T ss_pred             CC----CCCEEEECCCCCEECHHHHCCCCCEEEEEEECCC-CEEEEC
T ss_conf             67----8870462898703140331665664899850796-115740


No 7  
>pfam00149 Metallophos Calcineurin-like phosphoesterase. This family includes a diverse range of phosphoesterases, including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this superfamily centre around the metal chelating residues.
Probab=99.82  E-value=9e-19  Score=142.35  Aligned_cols=185  Identities=18%  Similarity=0.122  Sum_probs=109.7

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             78899411142788541000222100012100000123308999999999962699799993744448998999999999
Q gi|255764495|r   10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHW   89 (309)
Q Consensus        10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~   89 (309)
                      +||+|+||+|++....                         .....+.+.....+||+||++||+++.+....+.....+
T Consensus         1 ~~i~~isD~H~~~~~~-------------------------~~~~~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~   55 (186)
T pfam00149         1 MRILVIGDLHGGLDDL-------------------------DLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLF   55 (186)
T ss_pred             CEEEEEECCCCCHHHH-------------------------HHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf             9799995896883679-------------------------999999997289999889983674446864189999999


Q ss_pred             HHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEECH
Q ss_conf             98618997189994588422220356766432454313444445556212799719879998328888887554760089
Q gi|255764495|r   90 LRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQ  169 (309)
Q Consensus        90 ~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~  169 (309)
                      ...+..+.|+++++||||...........................           ........+    ...........
T Consensus        56 ~~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~----~~~~~~~~~~~  120 (186)
T pfam00149        56 ALKLKAPGPVYLVRGNHDFDSGNSVLGFYLECAGLPYVLGNGDVS-----------NGTVEIVGL----SSLYGKGGGLV  120 (186)
T ss_pred             HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC-----------CCCCCCCCC----CCCCCCCCHHH
T ss_conf             886307985799617873334556650355402333334322122-----------343221244----43234687799


Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCC-CCCCHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             9999999998524336970899983768887643110-1279789999998749819999876753
Q gi|255764495|r  170 EQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYN-RMFGIQRFQKMIWHEGADLILHGHTHLN  234 (309)
Q Consensus       170 ~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~-~~~~~~~l~~~l~~~~v~lvl~GH~H~~  234 (309)
                      .+..+...............|+++|+|+......... ...+...+..++...+++++++||+|.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~i~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~GH~H~~  186 (186)
T pfam00149       121 WEEFLELLDLLLLAALVDGKILLVHGPLSPSLDSGDDIYLFGEEALEDLLKDNGVDLVLRGHTHVP  186 (186)
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCEEEECCEECC
T ss_conf             999999985181115568859998799888655577405549999999999779989997958477


No 8  
>KOG1432 consensus
Probab=99.76  E-value=1.6e-15  Score=120.90  Aligned_cols=264  Identities=12%  Similarity=0.067  Sum_probs=143.3

Q ss_pred             CCCEEEEEEEECCCCCCCC--CCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHH
Q ss_conf             5532788994111427885--41000222100012100000123308999999999962699799993744448998999
Q gi|255764495|r    6 TTIMFVLAHISDIHLSYSP--SFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREI   83 (309)
Q Consensus         6 ~~~m~ri~hlSDlHlg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~   83 (309)
                      +...|||+.+||+|||...  .-++.....          ..+-.....-.-+-+-+..++||+||+|||++..-+.  -
T Consensus        50 ~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~----------~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t--~  117 (379)
T KOG1432          50 EDGTFKILQVADLHFGFGRETRCRDVLPSE----------EACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHST--Q  117 (379)
T ss_pred             CCCCEEEEEEECCCCCCCCCCCCCCCCCCH----------HHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCC--H
T ss_conf             798168999504411468876435557423----------4453371178999999751389889995771145110--7


Q ss_pred             HHHHHHHHHHC----CCCCEEEEECCCCCCCCCHHHHHHHH--HHHHHCCCC----CCCC-CC--CCCEEEE--------
Q ss_conf             99999998618----99718999458842222035676643--245431344----4445-55--6212799--------
Q gi|255764495|r   84 FTSTHWLRSIG----NPHDISIVPGNHDAYISGAKEKSLHA--WKDYITSDT----TCST-GK--KLFPYLR--------  142 (309)
Q Consensus        84 ~~~~~~~~~l~----~~~~v~~v~GNHD~~~~~~~~~~~~~--~~~~~~~~~----~~~~-~~--~~~~~~~--------  142 (309)
                      +.+..+++.++    ..+|..++.||||.............  ..++.....    +... ..  +.+....        
T Consensus       118 Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~  197 (379)
T KOG1432         118 DAATSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRLQLMKFISKLPYSLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSEL  197 (379)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCC
T ss_conf             68999998750586538975898335564233579999999743897310379964331343124515788215788510


Q ss_pred             -ECCCEEEEEECCCCCCC---CCCCCCEECHHHHHHHHHHHHHC-----CCCCCEEEEEEECCCCCCCCC----------
Q ss_conf             -71987999832888888---75547600899999999998524-----336970899983768887643----------
Q gi|255764495|r  143 -IRNNIALIGCSTAIATP---PFSANGYFGQEQAHATSKLLRKA-----NKKGFFRIIMMHHPPVLDTSS----------  203 (309)
Q Consensus       143 -~~~~~~~i~l~s~~~~~---~~~~~g~~~~~q~~~l~~~L~~~-----~~~~~~~iv~~Hhpp~~~~~~----------  203 (309)
                       ......++.|++.....   -...+.++...|..|++.+-.+.     ...+.+-+++.|.|.-....-          
T Consensus       198 ~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~  277 (379)
T KOG1432         198 ENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELESKTPLIGVF  277 (379)
T ss_pred             CCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCEE
T ss_conf             36751369999347765466444574410131677876544431033576388874689972337874336778621112


Q ss_pred             ---CCCCCCCHHHHHHHHH-HCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCC-CCCCCCEEEEEEECCCCE
Q ss_conf             ---1101279789999998-74981999987675324787169986899995762357788-887785489999538983
Q gi|255764495|r  204 ---LYNRMFGIQRFQKMIW-HEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHS-NKPQASYNLFYIEKKNEY  278 (309)
Q Consensus       204 ---~~~~~~~~~~l~~~l~-~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~y~li~i~~~~~~  278 (309)
                         ......+.. +...|. +.+|+.|+|||.|.+..+-..  .+.++.+.+++++..-.. ++...+-++++++.... 
T Consensus       278 ~E~~~~~~~~sg-~~~~L~~r~~Vk~vf~GHdHvNDfC~~~--k~~~wlCygGgaGyggYg~~gw~Rr~Rv~e~d~~~~-  353 (379)
T KOG1432         278 QEGVSASKHNSG-FLTTLVNRGNVKGVFCGHDHVNDFCGEL--KGELWLCYGGGAGYGGYGIGGWERRARVFELDLNKD-  353 (379)
T ss_pred             ECCCCCCCCCCH-HHHHHHHCCCCCEEEECCCCCCCEECCC--CCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCC-
T ss_conf             113113432627-7899876267535984565445600215--880799945877547767588544048998145604-


Q ss_pred             EEEEEEEE
Q ss_conf             89999995
Q gi|255764495|r  279 WTLEGKRY  286 (309)
Q Consensus       279 ~~v~~~r~  286 (309)
                       +++..++
T Consensus       354 -~IkTWKR  360 (379)
T KOG1432         354 -RIKTWKR  360 (379)
T ss_pred             -CCCEEEE
T ss_conf             -0113322


No 9  
>KOG1378 consensus
Probab=99.76  E-value=3.8e-16  Score=125.09  Aligned_cols=163  Identities=15%  Similarity=0.107  Sum_probs=116.8

Q ss_pred             CCCEEEECCCCCCC-CCH-HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHC---CCCCCCCCCCCC
Q ss_conf             99799993744448-998-9999999999861899718999458842222035676643245431---344444555621
Q gi|255764495|r   64 NVDHVSITGDIVNF-TCN-REIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYIT---SDTTCSTGKKLF  138 (309)
Q Consensus        64 ~pD~vvitGDl~~~-~~~-~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  138 (309)
                      ++|+|++.|||+-. +.. ..++...++++.+++..|..++.||||.......     .|..+..   -...........
T Consensus       174 k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~vPymv~~GNHE~d~~~~~-----~F~~y~~Rf~mP~~~s~s~~~l  248 (452)
T KOG1378         174 KPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIASYVPYMVCSGNHEIDWPPQP-----CFVPYSARFNMPGNSSESDSNL  248 (452)
T ss_pred             CCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC-----CCCCCCEEECCCCCCCCCCCCE
T ss_conf             88689982626522799851167788664345304854996366534577766-----6433210123688767777730


Q ss_pred             EEEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCC-CCEEEEEEECCCCCCCC--CCCCCC--CCHHH
Q ss_conf             27997198799983288888875547600899999999998524336-97089998376888764--311012--79789
Q gi|255764495|r  139 PYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKK-GFFRIIMMHHPPVLDTS--SLYNRM--FGIQR  213 (309)
Q Consensus       139 ~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~-~~~~iv~~Hhpp~~~~~--~~~~~~--~~~~~  213 (309)
                      .|....+++++|+|+|-...     .-....+|-+||++.|+++..+ ..+.|+++|-|......  ..+.+.  .-.+.
T Consensus       249 ~YSfd~G~vhfv~lsse~~~-----~~~~~~~QY~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~  323 (452)
T KOG1378         249 YYSFDVGGVHFVVLSTETYY-----NFLKGTAQYQWLERDLASVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREG  323 (452)
T ss_pred             EEEEEECCEEEEEEECCCCC-----CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCEECCCCHHHCCCCCCCHHHH
T ss_conf             69972063899997241024-----4444335899999999974656897399995566220687123103751012778


Q ss_pred             HHHHHHHCCCEEEEECCCCCCEE
Q ss_conf             99999874981999987675324
Q gi|255764495|r  214 FQKMIWHEGADLILHGHTHLNSL  236 (309)
Q Consensus       214 l~~~l~~~~v~lvl~GH~H~~~~  236 (309)
                      |.++|-+++||++|.||.|...+
T Consensus       324 LE~lf~~~~VDvvf~GHvH~YER  346 (452)
T KOG1378         324 LEPLFVKYKVDVVFWGHVHRYER  346 (452)
T ss_pred             HHHHHHHHCCEEEEEECEECCCC
T ss_conf             99999872941999602031010


No 10 
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.75  E-value=1.5e-15  Score=121.08  Aligned_cols=217  Identities=19%  Similarity=0.227  Sum_probs=135.1

Q ss_pred             EEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC--CCCCHHHHHHH
Q ss_conf             2788994111427885410002221000121000001233089999999999626997999937444--48998999999
Q gi|255764495|r    9 MFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIV--NFTCNREIFTS   86 (309)
Q Consensus         9 m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~--~~~~~~~~~~~   86 (309)
                      |.||+.+||+|-+                            ...+.+++..+...++|+++++|||+  +.+........
T Consensus         3 ~mkil~vtDlHg~----------------------------~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~   54 (226)
T COG2129           3 KMKILAVTDLHGS----------------------------EDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEEL   54 (226)
T ss_pred             CCEEEEEECCCCC----------------------------HHHHHHHHHHHHHCCCCEEEEECCEEHHHCCCHHHHHHH
T ss_conf             4059998403333----------------------------578999999876036888999533521323863787766


Q ss_pred             HHHHHHHC-CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCC
Q ss_conf             99998618-99718999458842222035676643245431344444555621279971987999832888888755476
Q gi|255764495|r   87 THWLRSIG-NPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANG  165 (309)
Q Consensus        87 ~~~~~~l~-~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g  165 (309)
                      .. ++.+. ...||++||||-|........          .. ...    .....+...+++.++++--.-. .++....
T Consensus        55 ~~-~e~l~~~~~~v~avpGNcD~~~v~~~l----------~~-~~~----~v~~~v~~i~~~~~~G~Ggsn~-tp~nt~~  117 (226)
T COG2129          55 NK-LEALKELGIPVLAVPGNCDPPEVIDVL----------KN-AGV----NVHGRVVEIGGYGFVGFGGSNP-TPFNTPR  117 (226)
T ss_pred             HH-HHHHHHCCCEEEEECCCCCHHHHHHHH----------HH-CCC----CCCCCEEEECCCEEEEECCCCC-CCCCCCC
T ss_conf             67-888874597089975889837888999----------86-365----2013168855808997556289-9888800


Q ss_pred             EECHHHH-HHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCC--CCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECC
Q ss_conf             0089999-9999998524336970899983768887643110--127978999999874981999987675324787169
Q gi|255764495|r  166 YFGQEQA-HATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYN--RMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNE  242 (309)
Q Consensus       166 ~~~~~q~-~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~--~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~  242 (309)
                      .++++.+ ..++..++....  ...|+++|+||.........  .-.++..+++++.+.++.+.+|||+|...-..   +
T Consensus       118 e~~E~~I~s~l~~~v~~~~~--~~~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d---~  192 (226)
T COG2129         118 EFSEDEIYSKLKSLVKKADN--PVNILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGID---K  192 (226)
T ss_pred             CCCHHHHHHHHHHHHHCCCC--CCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC---C
T ss_conf             15799999989988751367--406999537998865467777654460999999997497568971000355633---3


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEE
Q ss_conf             986899995762357788887785489999538983899999951
Q gi|255764495|r  243 KKLIPVVGIASASQKVHSNKPQASYNLFYIEKKNEYWTLEGKRYT  287 (309)
Q Consensus       243 ~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~~~~~v~~~r~~  287 (309)
                      -|...+++-++.+        ...|.+++++..    .|++++..
T Consensus       193 iG~TivVNPG~~~--------~g~yA~i~l~~~----~Vk~~~~~  225 (226)
T COG2129         193 IGNTIVVNPGPLG--------EGRYALIELEKE----VVKLEQFS  225 (226)
T ss_pred             CCCEEEECCCCCC--------CCEEEEEEECCC----EEEEEEEC
T ss_conf             5885898789766--------750799996286----89999821


No 11 
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.66  E-value=1.3e-15  Score=121.65  Aligned_cols=79  Identities=23%  Similarity=0.244  Sum_probs=62.3

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             78899411142788541000222100012100000123308999999999962699799993744448998999999999
Q gi|255764495|r   10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHW   89 (309)
Q Consensus        10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~   89 (309)
                      +||+|+||+|+...                         . ....+++..+..+.||+|+++||+++...+.......++
T Consensus        45 ~~iv~lSDlH~~~~-------------------------~-~~~~~~~~~i~~~~~DlivltGD~~~~~~~~~~~~~~~~   98 (284)
T COG1408          45 LKIVQLSDLHSLPF-------------------------R-EEKLALLIAIANELPDLIVLTGDYVDGDRPPGVAALALF   98 (284)
T ss_pred             EEEEEEEHHHHCHH-------------------------H-HHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCHHHHHHH
T ss_conf             06998625554625-------------------------6-778999999873499989994011056777777899999


Q ss_pred             HHHHCCCCCEEEEECCCCCCCCCHH
Q ss_conf             9861899718999458842222035
Q gi|255764495|r   90 LRSIGNPHDISIVPGNHDAYISGAK  114 (309)
Q Consensus        90 ~~~l~~~~~v~~v~GNHD~~~~~~~  114 (309)
                      +..|..+.++++|.||||.......
T Consensus        99 L~~L~~~~gv~av~GNHD~~~~~~~  123 (284)
T COG1408          99 LAKLKAPLGVFAVLGNHDYGVDRSN  123 (284)
T ss_pred             HHHHHCCCCEEEEECCCCCCCCCCC
T ss_conf             8755214787999447543540022


No 12 
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.62  E-value=9.8e-15  Score=115.78  Aligned_cols=194  Identities=19%  Similarity=0.174  Sum_probs=117.7

Q ss_pred             EEEEEEECCCCCCC-CCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             78899411142788-54100022210001210000012330899999999996269979999374444899899999999
Q gi|255764495|r   10 FVLAHISDIHLSYS-PSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTH   88 (309)
Q Consensus        10 ~ri~hlSDlHlg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~   88 (309)
                      -||.-|||+||... +...+.++....|+           .+++.+.....+..+  |.|++.|||++..+.+|...-..
T Consensus         1 M~iyaiaDLHLa~~~pKpM~vFGe~W~gh-----------~ekI~k~W~~~v~~e--DiVllpGDiSWaM~l~ea~~Dl~   67 (230)
T COG1768           1 MRIYAIADLHLALGVPKPMEVFGEPWSGH-----------HEKIKKHWRSKVSPE--DIVLLPGDISWAMRLEEAEEDLR   67 (230)
T ss_pred             CCEEEEEHHHHHHCCCCCEEECCCCCCCC-----------HHHHHHHHHHCCCHH--HEEEECCCCHHHEECHHHHHHHH
T ss_conf             94366323257537998613228754574-----------589999887227841--27884365245410534443145


Q ss_pred             HHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEE---ECCCCC-CCCC-CC
Q ss_conf             998618997189994588422220356766432454313444445556212799719879998---328888-8875-54
Q gi|255764495|r   89 WLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIG---CSTAIA-TPPF-SA  163 (309)
Q Consensus        89 ~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---l~s~~~-~~~~-~~  163 (309)
                      |+..|  |-.-+.+.||||+++... .+......+...-      ....    ....++.++|   ++|... ..++ ..
T Consensus        68 ~i~~L--PG~K~m~rGNHDYWw~s~-skl~n~lp~~l~~------~n~~----f~l~n~aI~G~RgW~s~~~~~e~~te~  134 (230)
T COG1768          68 FIGDL--PGTKYMIRGNHDYWWSSI-SKLNNALPPILFY------LNNG----FELLNYAIVGVRGWDSPSFDSEPLTEQ  134 (230)
T ss_pred             HHHCC--CCCEEEEECCCCCCCCHH-HHHHHHCCCHHHH------HCCC----EEEEEEEEEEEECCCCCCCCCCCCCHH
T ss_conf             65048--996798726776321028-9998655726756------5053----157427898741232787776756456


Q ss_pred             CCEECHHHHHHHHH-HHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEE
Q ss_conf             76008999999999-98524336970899983768887643110127978999999874981999987675324
Q gi|255764495|r  164 NGYFGQEQAHATSK-LLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSL  236 (309)
Q Consensus       164 ~g~~~~~q~~~l~~-~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~  236 (309)
                      ..++-...+.+|+. ..+..+......|+|+|+||+.....       ...+.++++++.|+..+.||.|....
T Consensus       135 Deki~~RE~~RLrlsa~a~l~k~~~~fivM~HYPP~s~~~t-------~~~~sevlee~rv~~~lyGHlHgv~~  201 (230)
T COG1768         135 DEKIFLREIGRLRLSADAALPKGVSKFIVMTHYPPFSDDGT-------PGPFSEVLEEGRVSKCLYGHLHGVPR  201 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC-------CCCHHHHHHHCCEEEEEEEECCCCCC
T ss_conf             78899999999987798754667675999970699899999-------74168888626421577620157898


No 13 
>PRK09453 phosphodiesterase; Provisional
Probab=99.59  E-value=4.1e-13  Score=105.13  Aligned_cols=155  Identities=20%  Similarity=0.178  Sum_probs=96.5

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCH----HHH--
Q ss_conf             78899411142788541000222100012100000123308999999999962699799993744448998----999--
Q gi|255764495|r   10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCN----REI--   83 (309)
Q Consensus        10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~----~~~--   83 (309)
                      -||+-|||+|-                            ....++++++.+++.++|.|+++||++..|..    +.|  
T Consensus         1 MkI~vISDtHg----------------------------n~~ale~vl~~~~~~~vD~iih~GDiv~~Gp~~~~~~~y~p   52 (183)
T PRK09453          1 MKLGFASDIHG----------------------------SLPATEKALELFKQSGADWLVHLGDVLYHGPRNPLPEGYAP   52 (183)
T ss_pred             CEEEEEEECCC----------------------------CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCH
T ss_conf             98999986789----------------------------96999999999875599899999862555777656444786


Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf             99999998618997189994588422220356766432454313444445556212799719879998328888887554
Q gi|255764495|r   84 FTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSA  163 (309)
Q Consensus        84 ~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~  163 (309)
                      ....+.++.+.  .++++|.||||......           ...          ++   ......++.            
T Consensus        53 ~~v~e~l~~~~--~~~~~V~GN~D~~vd~~-----------~~~----------~~---~~~~~~~~~------------   94 (183)
T PRK09453         53 KKVAELLNAYA--DKIIAVRGNCDSEVDQM-----------LLH----------FP---IMAPYQQVL------------   94 (183)
T ss_pred             HHHHHHHHHCC--CCEEEECCCCCHHHHHH-----------HHC----------CC---CCCCCEEEE------------
T ss_conf             99999998518--86899757881777465-----------335----------87---689826998------------


Q ss_pred             CCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCC
Q ss_conf             76008999999999985243369708999837688876431101279789999998749819999876753247871699
Q gi|255764495|r  164 NGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEK  243 (309)
Q Consensus       164 ~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~  243 (309)
                                          - +..+|.++|-.+..           .+   ++.+..+++++++||+|.+....+.+  
T Consensus        95 --------------------~-~g~ri~l~HG~~~~-----------~~---~~~~~~~~Dvvi~GHTH~p~~~~~~g--  137 (183)
T PRK09453         95 --------------------L-EGKRLFLTHGHLYG-----------PE---NLPALHAGDVLVYGHTHIPVAEKQGG--  137 (183)
T ss_pred             --------------------E-CCEEEEEECCCCCC-----------HH---HHHHHCCCCEEEECCCCCCEEEEECC--
T ss_conf             --------------------8-99899998788578-----------65---76652289999989756414799799--


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCEEEEE
Q ss_conf             8689999576235778888778548999
Q gi|255764495|r  244 KLIPVVGIASASQKVHSNKPQASYNLFY  271 (309)
Q Consensus       244 ~~~~~~~~~s~~~~~~~~~~~~~y~li~  271 (309)
                        +.+++.||++..+.  +.+++|.+++
T Consensus       138 --~l~iNPGSvg~PR~--g~p~syaIld  161 (183)
T PRK09453        138 --IILFNPGSVSLPKG--GYPASYGILD  161 (183)
T ss_pred             --EEEEECCCCCCCCC--CCCCEEEEEE
T ss_conf             --99996999877799--8989799998


No 14 
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.57  E-value=5.7e-13  Score=104.18  Aligned_cols=77  Identities=18%  Similarity=0.201  Sum_probs=51.3

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC--CCCEEEECCCCCCCCC-----HHH
Q ss_conf             788994111427885410002221000121000001233089999999999626--9979999374444899-----899
Q gi|255764495|r   10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLH--NVDHVSITGDIVNFTC-----NRE   82 (309)
Q Consensus        10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~--~pD~vvitGDl~~~~~-----~~~   82 (309)
                      .|.+.|||+|||+..+                         ...+++++.++..  ..+.+++.|||++..-     ..-
T Consensus         1 mr~~FISD~HL~~~~~-------------------------~~~~~l~~fL~~~~~~~~~LyllGDifD~W~g~~~~~~~   55 (240)
T PRK05340          1 MPTLFISDLHLSPERP-------------------------AITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPF   55 (240)
T ss_pred             CCEEEEEEECCCCCCH-------------------------HHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCCHH
T ss_conf             9669994008999983-------------------------799999999985315588899934577576067867879


Q ss_pred             HHHHHHHHHHHCC-CCCEEEEECCCCCCCC
Q ss_conf             9999999986189-9718999458842222
Q gi|255764495|r   83 IFTSTHWLRSIGN-PHDISIVPGNHDAYIS  111 (309)
Q Consensus        83 ~~~~~~~~~~l~~-~~~v~~v~GNHD~~~~  111 (309)
                      +......+.++.. ..+|++++||||.+..
T Consensus        56 ~~~v~~~L~~l~~~G~~V~yi~GNHDfllg   85 (240)
T PRK05340         56 AAEIAAALKALSDSGVPCYFMHGNRDFLLG   85 (240)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECCCCHHHH
T ss_conf             999999999998569869999168725535


No 15 
>TIGR00619 sbcd nuclease SbcCD, D subunit; InterPro: IPR004593 All proteins in this family for which functions are known are double-stranded DNA exonuclease (as part of a complex with SbcC homologs). This complex functions in the initiation of recombination and recombinational repair and is particularly important in regulating the stability of DNA sections that can form secondary structures. This family is likely to be homologous to the MRE11 family.; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=99.51  E-value=3.3e-14  Score=112.31  Aligned_cols=101  Identities=21%  Similarity=0.227  Sum_probs=71.7

Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH--HHHHHH
Q ss_conf             889941114278854100022210001210000012330899999999996269979999374444899899--999999
Q gi|255764495|r   11 VLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNRE--IFTSTH   88 (309)
Q Consensus        11 ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~--~~~~~~   88 (309)
                      ||+|+||+|+|..-.....++.+  |     ..-+..+....|+.+++.+.++++|+||++||++|..+|..  -+.+.+
T Consensus         2 riLHtsDwHlGk~l~~GhinPat--G-----l~Sr~~e~~~~L~~l~~~~~~e~~Da~lvAGDvFD~~~P~~ea~~L~~~   74 (275)
T TIGR00619         2 RILHTSDWHLGKTLEGGHINPAT--G-----LVSRLAEQKAFLDDLLEILKAEQVDALLVAGDVFDTANPPAEAQELFYA   74 (275)
T ss_pred             CCHHHHHHHHCCCCCCCCCCCCH--H-----HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf             40013057513233787103002--2-----5548999999999999999738998899700007889887999999999


Q ss_pred             HHHHHC---CCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf             998618---997189994588422220356766
Q gi|255764495|r   89 WLRSIG---NPHDISIVPGNHDAYISGAKEKSL  118 (309)
Q Consensus        89 ~~~~l~---~~~~v~~v~GNHD~~~~~~~~~~~  118 (309)
                      ++..|.   +++|+++++||||..........+
T Consensus        75 ~l~~L~~~~~R~p~Vvi~GNHD~~~~Ls~~~~L  107 (275)
T TIGR00619        75 FLLNLSDANPRLPIVVISGNHDSADRLSAAKKL  107 (275)
T ss_pred             HHHHHHHCCCCEEEEEECCCCCCHHHHCHHHHH
T ss_conf             999998538961278704788877861116778


No 16 
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase; InterPro: IPR010138   This entry represents LpxH, or UDP-2,3-diacylglucosamine hydrolase (or pyrophosphatase), which is an essential enzyme in Escherichia coli that catalyses the fourth step in lipid A biosynthesis. This reaction involves pyrophosphate bond hydrolysis of the precursor UDP-2,3-diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate and UMP . Several Gram-negative bacteria have homologues of LpxH and/or LpxH2, while others have only distant orthologues of LpxH or LpxH2, or lack these enzymes altogether .; GO: 0016462 pyrophosphatase activity, 0009245 lipid A biosynthetic process, 0005737 cytoplasm.
Probab=99.41  E-value=2.9e-12  Score=99.47  Aligned_cols=178  Identities=17%  Similarity=0.199  Sum_probs=96.6

Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH--C-CCCEEEECCCCCCCC----CHHH-HH
Q ss_conf             99411142788541000222100012100000123308999999999962--6-997999937444489----9899-99
Q gi|255764495|r   13 AHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILL--H-NVDHVSITGDIVNFT----CNRE-IF   84 (309)
Q Consensus        13 ~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~--~-~pD~vvitGDl~~~~----~~~~-~~   84 (309)
                      +.||||||++.                         .+++=+.+++.+++  . ++|++.|.|||++.+    .+.+ .+
T Consensus         2 lFISDLHL~~~-------------------------~P~iTa~Fl~FL~~~A~G~AdALYILGDLFeaWIGDD~~~~l~~   56 (241)
T TIGR01854         2 LFISDLHLSEE-------------------------RPDITALFLDFLREEARGKADALYILGDLFEAWIGDDDPSALAR   56 (241)
T ss_pred             CCCCCCCCCCC-------------------------CCHHHHHHHHHHHHHCCCCCHHHHHHCCHHHCEECCCCCCHHHH
T ss_conf             50013458824-------------------------60789999999875233400002210120001146897217999


Q ss_pred             HHHHHHHHHC-CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC-EEEEEECCCCCCCCCC
Q ss_conf             9999998618-9971899945884222203567664324543134444455562127997198-7999832888888755
Q gi|255764495|r   85 TSTHWLRSIG-NPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNN-IALIGCSTAIATPPFS  162 (309)
Q Consensus        85 ~~~~~~~~l~-~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~s~~~~~~~~  162 (309)
                      ...+.++.+. ..+|||++.||-|......+-+   .-+--.-.+. ...        ..+|. +.++--||.+.....+
T Consensus        57 ~va~~~r~vsd~GV~~YF~~GNRDFLiG~~Far---~aG~~LLPD~-~Vi--------dLYG~k~Ll~HGDtLCTdD~aY  124 (241)
T TIGR01854        57 SVAEAIRAVSDQGVPCYFMHGNRDFLIGKRFAR---EAGMTLLPDE-SVI--------DLYGQKVLLMHGDTLCTDDEAY  124 (241)
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH---HHCCEECCCH-HHH--------HHCCCCEEEEECCCCCHHHHHH
T ss_conf             999999987328907984059851566689999---7088107862-465--------5548827995378630201899


Q ss_pred             --------------CCCEECHHHHHHHHHHHHHCCCCC---CE------EEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             --------------476008999999999985243369---70------8999837688876431101279789999998
Q gi|255764495|r  163 --------------ANGYFGQEQAHATSKLLRKANKKG---FF------RIIMMHHPPVLDTSSLYNRMFGIQRFQKMIW  219 (309)
Q Consensus       163 --------------~~g~~~~~q~~~l~~~L~~~~~~~---~~------~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~  219 (309)
                                    -...++-.....|.+.++......   +.      -.-+|=              .+.+++.+.+.
T Consensus       125 q~FR~~vh~p~lQ~lFl~LPL~~R~~lA~k~R~~S~~~~~~K~~Gdqaqf~~ImD--------------V~~~~v~~~~~  190 (241)
T TIGR01854       125 QAFRAKVHQPWLQRLFLLLPLAVRVKLARKIRAESRADKQEKSQGDQAQFVDIMD--------------VNPAEVAAVMR  190 (241)
T ss_pred             HHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC--------------CCHHHHHHHHH
T ss_conf             9999985174899998624489999999999998889863310135224212430--------------58668899998


Q ss_pred             HCCCEEEEECCCCCCEEEEEEC
Q ss_conf             7498199998767532478716
Q gi|255764495|r  220 HEGADLILHGHTHLNSLHWIKN  241 (309)
Q Consensus       220 ~~~v~lvl~GH~H~~~~~~~~~  241 (309)
                      +|||+.++|||||+|..+.++-
T Consensus       191 ~~~v~~lIHGHTHRpAiH~~~~  212 (241)
T TIGR01854       191 RYGVDLLIHGHTHRPAIHELQA  212 (241)
T ss_pred             HCCCCEEECCCCCCCCCCEECC
T ss_conf             7386143067879862241205


No 17 
>TIGR00040 yfcE phosphodiesterase, MJ0936 family; InterPro: IPR000979   Members of this largely uncharacterised family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterised archaeal putative phosphoesterases. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown  to act on model phosphodiesterase substrates; a divalent cation was required. The following uncharacterised proteins are members of the fsmily: Escherichia coli hypothetical protein yfcE; Bacillus subtilis hypothetical protein ysnB; Mycoplasma genitalium and Mycoplasma pneumoniae hypothetical protein MG207; and M. jannaschii hypothetical proteins MJ0623 and MJ0936. .
Probab=99.41  E-value=1e-11  Score=95.92  Aligned_cols=163  Identities=19%  Similarity=0.256  Sum_probs=97.7

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             788994111427885410002221000121000001233089999999999626-9979999374444899899999999
Q gi|255764495|r   10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLH-NVDHVSITGDIVNFTCNREIFTSTH   88 (309)
Q Consensus        10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~-~pD~vvitGDl~~~~~~~~~~~~~~   88 (309)
                      .||+-+||+|.-                            ....+...+..+.+ ++|+||++||++|.-...  .. .+
T Consensus         1 m~il~~SDtH~~----------------------------~~A~e~~~~~~~~~~~~D~viH~GD~~N~~~s~--~~-l~   49 (170)
T TIGR00040         1 MLILVISDTHIP----------------------------LRATELPVEAFDKESNVDLVIHAGDLTNSYKSP--FV-LK   49 (170)
T ss_pred             CEEEEEEECCCC----------------------------CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCH--HH-HH
T ss_conf             958999620897----------------------------533157999998751887999921432355787--89-99


Q ss_pred             HHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEEC
Q ss_conf             99861899718999458842222035676643245431344444555621279971987999832888888755476008
Q gi|255764495|r   89 WLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFG  168 (309)
Q Consensus        89 ~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~  168 (309)
                      .+..+.  .++++|.||+|....                                                         
T Consensus        50 ~~~~~~--~~~~aV~GN~D~~~~---------------------------------------------------------   70 (170)
T TIGR00040        50 EFEDLA--AKVIAVRGNNDGKER---------------------------------------------------------   70 (170)
T ss_pred             HHHHCC--CCEEEEECCCCCCCC---------------------------------------------------------
T ss_conf             886313--858999678998200---------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEE
Q ss_conf             99999999998524336970899983768887643110127978999999874981999987675324787169986899
Q gi|255764495|r  169 QEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPV  248 (309)
Q Consensus       169 ~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~  248 (309)
                         ..+.+..+-+   -+...|+++|..-+.......+   ....|..+.++.++|++++||+|.+....+++    +..
T Consensus        71 ---~~~~~~~~~~---~e~~~f~~~hg~~~~~~~~~g~---~~~~L~~~~~~~~~DVli~GHTH~~~~e~~~~----~l~  137 (170)
T TIGR00040        71 ---EELPEEEIFE---VEGIKFGLVHGDLVYPRGDLGH---WYLVLEYLAKELGVDVLIFGHTHIPVAEELRG----ILL  137 (170)
T ss_pred             ---CCCCHHHHHH---CCCEEEEEEECCEEEECCCCCH---HHHHHHHHHHHCCCEEEEECCCCEEEEEECCC----EEE
T ss_conf             ---0000344422---3880279985785642446771---13556767766284089988714000011276----888


Q ss_pred             EEECCCCCCCCCC-CCCCCEEEEEEECC
Q ss_conf             9957623577888-87785489999538
Q gi|255764495|r  249 VGIASASQKVHSN-KPQASYNLFYIEKK  275 (309)
Q Consensus       249 ~~~~s~~~~~~~~-~~~~~y~li~i~~~  275 (309)
                      ++-||.+..+... ...++|..++++.+
T Consensus       138 ~NPGS~~~p~~~~~yt~~s~~~L~~~~~  165 (170)
T TIGR00040       138 INPGSLTGPRNGRKYTTPSYAILEVDKD  165 (170)
T ss_pred             EECCEEEECCCCCCCCCCEEEEEEECCE
T ss_conf             8188336425799624205899970860


No 18 
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.40  E-value=1.4e-10  Score=88.38  Aligned_cols=156  Identities=21%  Similarity=0.218  Sum_probs=99.4

Q ss_pred             EEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             27889941114278854100022210001210000012330899999999996269979999374444899899999999
Q gi|255764495|r    9 MFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTH   88 (309)
Q Consensus         9 m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~   88 (309)
                      |.+|+-+||+|...                            ...+...+.....++|+|+++||.+......++...  
T Consensus         1 ~m~ilviSDtH~~~----------------------------~~~~~~~~~~~~~~~d~vih~GD~~~~~~~~~l~~~--   50 (172)
T COG0622           1 MMKILVISDTHGPL----------------------------RAIEKALKIFNLEKVDAVIHAGDSTSPFTLDALEGG--   50 (172)
T ss_pred             CCEEEEEECCCCCH----------------------------HHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHC--
T ss_conf             94899995467872----------------------------466699998510599999989975772337877411--


Q ss_pred             HHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEEC
Q ss_conf             99861899718999458842222035676643245431344444555621279971987999832888888755476008
Q gi|255764495|r   89 WLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFG  168 (309)
Q Consensus        89 ~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~  168 (309)
                            ...++++|.||.|.....                                                    ...+
T Consensus        51 ------~~~~i~~V~GN~D~~~~~----------------------------------------------------~~~p   72 (172)
T COG0622          51 ------LAAKLIAVRGNCDGEVDQ----------------------------------------------------EELP   72 (172)
T ss_pred             ------CCCCEEEEECCCCCCCCC----------------------------------------------------CCCC
T ss_conf             ------366369997778875101----------------------------------------------------3599


Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEE
Q ss_conf             99999999998524336970899983768887643110127978999999874981999987675324787169986899
Q gi|255764495|r  169 QEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPV  248 (309)
Q Consensus       169 ~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~  248 (309)
                      +.+.         . .-+..+|.++|-......       .+...+..+.+..++|++++||+|.+......+    +.+
T Consensus        73 ~~~~---------~-~~~g~ki~l~HGh~~~~~-------~~~~~l~~la~~~~~Dvli~GHTH~p~~~~~~~----i~~  131 (172)
T COG0622          73 EELV---------L-EVGGVKIFLTHGHLYFVK-------TDLSLLEYLAKELGADVLIFGHTHKPVAEKVGG----ILL  131 (172)
T ss_pred             HHHE---------E-EECCEEEEEECCCCCCCC-------CCHHHHHHHHHHCCCCEEEECCCCCCEEEEECC----EEE
T ss_conf             6586---------8-988899999889834667-------688899999974699899979867540899899----999


Q ss_pred             EEECCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf             995762357788887785489999538
Q gi|255764495|r  249 VGIASASQKVHSNKPQASYNLFYIEKK  275 (309)
Q Consensus       249 ~~~~s~~~~~~~~~~~~~y~li~i~~~  275 (309)
                      ++-||.+..+..  ..++|.+++++..
T Consensus       132 vNPGS~s~pr~~--~~~sy~il~~~~~  156 (172)
T COG0622         132 VNPGSVSGPRGG--NPASYAILDVDNL  156 (172)
T ss_pred             ECCCCCCCCCCC--CCCEEEEEECCCC
T ss_conf             849986777889--8757999984886


No 19 
>KOG2679 consensus
Probab=99.38  E-value=1.1e-10  Score=89.04  Aligned_cols=191  Identities=16%  Similarity=0.096  Sum_probs=98.2

Q ss_pred             HHHHHCCCCEEEECCCCC-CCCCHHHHH-HHHHHHHHH----CCCCCEEEEECCCCCCCCCHHHHH--HHHH-HHHHCCC
Q ss_conf             999626997999937444-489989999-999999861----899718999458842222035676--6432-4543134
Q gi|255764495|r   58 NDILLHNVDHVSITGDIV-NFTCNREIF-TSTHWLRSI----GNPHDISIVPGNHDAYISGAKEKS--LHAW-KDYITSD  128 (309)
Q Consensus        58 ~~i~~~~pD~vvitGDl~-~~~~~~~~~-~~~~~~~~l----~~~~~v~~v~GNHD~~~~~~~~~~--~~~~-~~~~~~~  128 (309)
                      +.......|+|+-+||-+ +.|...+.+ .+++-++.+    ....|.|.|.||||+...-..+-.  ++.. .+|+...
T Consensus        69 ~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQkpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c~r  148 (336)
T KOG2679          69 EIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQKPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWICPR  148 (336)
T ss_pred             HHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCEECCC
T ss_conf             67775264089963873100687877780477654240348210344332205765567522202087875063444350


Q ss_pred             CCCCCCCCCCEEEEECCCEEEEEECCC------CC-CCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
Q ss_conf             444455562127997198799983288------88-88755476008999999999985243369708999837688876
Q gi|255764495|r  129 TTCSTGKKLFPYLRIRNNIALIGCSTA------IA-TPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDT  201 (309)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~i~l~s~------~~-~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~  201 (309)
                      .-.... +.....  .-+....+.++.      .+ ..+......+...++.||+..|++..+  ++.||+.|||....+
T Consensus       149 sf~~~a-e~ve~f--~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~S~a--~wkiVvGHh~i~S~~  223 (336)
T KOG2679         149 SFYVDA-EIVEMF--FVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALLSWLEVALKASRA--KWKIVVGHHPIKSAG  223 (336)
T ss_pred             HHHHCC-EEEEEE--CCCCCCCHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC--CEEEEECCCCEEHHH
T ss_conf             776200-013331--112441201101025523223446780889999999999999987432--569994255100110


Q ss_pred             CCC-CCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCC
Q ss_conf             431-10127978999999874981999987675324787169986899995762357
Q gi|255764495|r  202 SSL-YNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQK  257 (309)
Q Consensus       202 ~~~-~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~  257 (309)
                      ... ...+  .++|..+|++.+|+++++||.|--+..  ..+..++.++..|+++..
T Consensus       224 ~HG~T~eL--~~~LlPiL~~n~VdlY~nGHDHcLQhi--s~~e~~iqf~tSGagSka  276 (336)
T KOG2679         224 HHGPTKEL--EKQLLPILEANGVDLYINGHDHCLQHI--SSPESGIQFVTSGAGSKA  276 (336)
T ss_pred             CCCCHHHH--HHHHHHHHHHCCCCEEEECCHHHHHHC--CCCCCCEEEEEECCCCCC
T ss_conf             15984999--998888998639757975654566521--577777058940775545


No 20 
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.37  E-value=1.9e-12  Score=100.69  Aligned_cols=198  Identities=16%  Similarity=0.121  Sum_probs=90.5

Q ss_pred             EEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC--CEEEECCCCCCCC-----CHHHH-HH
Q ss_conf             9411142788541000222100012100000123308999999999962699--7999937444489-----98999-99
Q gi|255764495|r   14 HISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNV--DHVSITGDIVNFT-----CNREI-FT   85 (309)
Q Consensus        14 hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~p--D~vvitGDl~~~~-----~~~~~-~~   85 (309)
                      .|||+|||+..                         ++.-+.+++.++.+.+  |.+.+.|||++..     .++-. +.
T Consensus         2 FISDlHL~~~~-------------------------p~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V   56 (237)
T COG2908           2 FISDLHLGPKR-------------------------PALTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQV   56 (237)
T ss_pred             EEECCCCCCCC-------------------------CHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHCCCCCCHHHHHH
T ss_conf             00200258997-------------------------07899999999835356757999500166662687603899999


Q ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEE--CCCCCCC----
Q ss_conf             9999986189971899945884222203567664324543134444455562127997198799983--2888888----
Q gi|255764495|r   86 STHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGC--STAIATP----  159 (309)
Q Consensus        86 ~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l--~s~~~~~----  159 (309)
                      +..+........+||+++||||.......   ..........         ..+.+....+-.++.+  |+.+...    
T Consensus        57 ~~~l~~~a~~G~~v~~i~GN~Dfll~~~f---~~~~g~~~l~---------~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~  124 (237)
T COG2908          57 AQKLLRLARKGTRVYYIHGNHDFLLGKRF---AQEAGGMTLL---------PDPIVLDLYGKRILLAHGDTFCTDDRAYQ  124 (237)
T ss_pred             HHHHHHHHHCCCEEEEECCCHHHHHHHHH---HHHCCCEEEC---------CCCEEEEECCCEEEEEECCCCCCHHHHHH
T ss_conf             99999998659847994476188887888---8652765875---------75404421694799974774361589999


Q ss_pred             CCCCCCEECHHHHHHHHHHHHHCCCC-CCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEE
Q ss_conf             75547600899999999998524336-97089998376888764311012797899999987498199998767532478
Q gi|255764495|r  160 PFSANGYFGQEQAHATSKLLRKANKK-GFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHW  238 (309)
Q Consensus       160 ~~~~~g~~~~~q~~~l~~~L~~~~~~-~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~  238 (309)
                      ++...+...-.|.-.+..-++ .+.+ .....-..-...............+.+.+.+.+.+++|+.++|||+|++....
T Consensus       125 ~~r~~~~~~~~~~lflnl~l~-~R~ri~~k~r~~s~~~k~~~k~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~  203 (237)
T COG2908         125 WFRYKVHWAWLQLLFLNLPLR-VRRRIAYKIRSLSSWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHN  203 (237)
T ss_pred             HHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCC
T ss_conf             999970209999999871999-9999999999765776776654899998629999999997299979954856076636


Q ss_pred             EECCCCCEEEEEECC
Q ss_conf             716998689999576
Q gi|255764495|r  239 IKNEKKLIPVVGIAS  253 (309)
Q Consensus       239 ~~~~~~~~~~~~~~s  253 (309)
                      +++    ..++++|+
T Consensus       204 i~~----~~yi~lGd  214 (237)
T COG2908         204 IPG----ITYINLGD  214 (237)
T ss_pred             CCC----CEEEECCC
T ss_conf             888----62896486


No 21 
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=99.31  E-value=2.3e-09  Score=80.47  Aligned_cols=247  Identities=18%  Similarity=0.203  Sum_probs=126.1

Q ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCHHHHH
Q ss_conf             55327889941114278854100022210001210000012330899999999996269979999-37444489989999
Q gi|255764495|r    6 TTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSI-TGDIVNFTCNREIF   84 (309)
Q Consensus         6 ~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvi-tGDl~~~~~~~~~~   84 (309)
                      .|+=+||+-.||||--.            ..|--+...............+++.++++.|+.|++ .||+.+...-.+|.
T Consensus        36 ~tV~LrIL~TTDlH~nv------------~~yDYy~Dk~~~~~GLar~ATLIk~aRaE~~NslLvDNGD~IQGtPlgdy~  103 (780)
T PRK09418         36 STVNLRILETSDIHVNL------------MNYDYYQTKTDNKVGLVQTATLVNKAREEAKNSVLFDDGDALQGTPLGDYV  103 (780)
T ss_pred             CEEEEEEEEECCCCCCC------------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHH
T ss_conf             71789998411344566------------685013699688767999999999999648982999687301587078999


Q ss_pred             HHH-----------------HHHHHHCCCCCEEEEECCCCCCCCCH-HHHHHHH-HHHHHCCCCC--------CCCCCCC
Q ss_conf             999-----------------99986189971899945884222203-5676643-2454313444--------4455562
Q gi|255764495|r   85 TST-----------------HWLRSIGNPHDISIVPGNHDAYISGA-KEKSLHA-WKDYITSDTT--------CSTGKKL  137 (309)
Q Consensus        85 ~~~-----------------~~~~~l~~~~~v~~v~GNHD~~~~~~-~~~~~~~-~~~~~~~~~~--------~~~~~~~  137 (309)
                      ...                 ..+..|  .+.+ .++||||+-.... ..+.... -.++......        .......
T Consensus       104 A~~~~~~~~~~~~g~~HPmi~AMN~L--gYDA-~tLGNHEFNYGLd~L~k~l~~a~fPvl~ANV~k~d~~~~~~~~~~~f  180 (780)
T PRK09418        104 ANKINDPKKPVDPSYTHPLYRLMNLM--KYDV-ISLGNHEFNYGLDYLNKVISKTEFPVINSNVYKDDKDNNEENDQNYF  180 (780)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHHC--CCCE-ECCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf             76323444677777768899998753--9877-51446554368899999985599988975642056666655687354


Q ss_pred             CEEEEEC------------CCEEEEEECCCCCCCCCCC--CCEE-CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
Q ss_conf             1279971------------9879998328888887554--7600-89999999999852433697089998376888764
Q gi|255764495|r  138 FPYLRIR------------NNIALIGCSTAIATPPFSA--NGYF-GQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTS  202 (309)
Q Consensus       138 ~~~~~~~------------~~~~~i~l~s~~~~~~~~~--~g~~-~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~  202 (309)
                      .+|....            =.+.+||+.+.....|...  .|.+ ..+-++..++...+.+.++..+||+.-|--+....
T Consensus       181 ~PY~Ilek~v~d~~G~~~~VKIGIIG~vpPqI~~WDk~~L~GkV~~~DiVEtAkk~Vp~mk~~GADvIValaHsGi~~~~  260 (780)
T PRK09418        181 KPYHVFEKEVEDESGQKQKVKIGVMGFVPPQVMNWDKANLEGKVKAKDIVETAKKMVPKMKAEGADVIVALAHSGVDKSG  260 (780)
T ss_pred             CCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf             88799998875488971225899994478765222443445737966899999999999987499999994345667778


Q ss_pred             CCCCCCCCHHHHHHHHHH-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEE
Q ss_conf             311012797899999987-4981999987675324787169986899995762357788887785489999538983899
Q gi|255764495|r  203 SLYNRMFGIQRFQKMIWH-EGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKNEYWTL  281 (309)
Q Consensus       203 ~~~~~~~~~~~l~~~l~~-~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~~~~~v  281 (309)
                       ......+   ....|++ .++|+|++||.|......+.|    +|++..+.-++       .-|-=-++++.+++.|+|
T Consensus       261 -~~~g~EN---a~~~La~VpGIDAIv~GHsH~~~~~tinG----vpvVmPG~wGs-------hLGvIDL~Le~~~gkW~V  325 (780)
T PRK09418        261 -YNVGMEN---ASYYLTEVPGVDAVLMGHSHTEVKDVFNG----VPVVMPGVFGS-------NLGIIDMQLKKVNGKWEV  325 (780)
T ss_pred             -CCCCCHH---HHHHHHCCCCCCEEEECCCCCCCCCCCCC----EEEECCCHHHC-------EEEEEEEEEEEECCEEEE
T ss_conf             -8765107---99998639987589833445002476588----47756665666-------244899999996998999


Q ss_pred             E
Q ss_conf             9
Q gi|255764495|r  282 E  282 (309)
Q Consensus       282 ~  282 (309)
                      .
T Consensus       326 ~  326 (780)
T PRK09418        326 Q  326 (780)
T ss_pred             E
T ss_conf             7


No 22 
>PRK04036 DNA polymerase II small subunit; Validated
Probab=99.30  E-value=7.4e-11  Score=90.24  Aligned_cols=196  Identities=19%  Similarity=0.242  Sum_probs=101.5

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH--------HCCCCEEEECCCCCCC----
Q ss_conf             7889941114278854100022210001210000012330899999999996--------2699799993744448----
Q gi|255764495|r   10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDIL--------LHNVDHVSITGDIVNF----   77 (309)
Q Consensus        10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~--------~~~pD~vvitGDl~~~----   77 (309)
                      ...+.|||+|+|.                       +.+..+.|+.+++.++        +.+...++++||+++.    
T Consensus       237 v~aafiSDiHvGS-----------------------k~Fle~~w~kFi~Wln~~~~~~~~a~~vkYlviaGD~VDGVGiY  293 (497)
T PRK04036        237 VYAVFISDVHVGS-----------------------KEFLEDAFEKFLDWLNGEVGSEEIASRVKYLIIAGDLVDGIGIY  293 (497)
T ss_pred             EEEEEEECCCCCC-----------------------HHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEECCCCCCEECC
T ss_conf             6899994222171-----------------------87879999999998658986344564053899945743640058


Q ss_pred             -CC---------HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHH-HHHHHHCCCCCCCCCCCCCEEEEECCC
Q ss_conf             -99---------8999999999986189971899945884222203567664-324543134444455562127997198
Q gi|255764495|r   78 -TC---------NREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLH-AWKDYITSDTTCSTGKKLFPYLRIRNN  146 (309)
Q Consensus        78 -~~---------~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (309)
                       |.         -+.|+.+.++++++...+.++++|||||..........+. .+...+..   ........|......+
T Consensus       294 PgQe~eL~i~di~~QY~~~a~~l~~iP~~I~iii~PGNHDavR~AEPQP~l~~~~~~~~~~---~n~~~v~NP~~v~l~G  370 (497)
T PRK04036        294 PGQEKELDIVDIYEQYEEAAEYLSQIPEHIKIIISPGNHDAVRLAEPQPAFPEEIASLFPK---ENVTFVSNPAVVNLHG  370 (497)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHCCC---CCEEEECCCEEEEECC
T ss_conf             9843414307899999999999985855757998579866335468999988888842554---7869967974899888


Q ss_pred             EEEEEEC-----CCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             7999832-----88888875547600899999999998524336970899983768887643110127978999999874
Q gi|255764495|r  147 IALIGCS-----TAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHE  221 (309)
Q Consensus       147 ~~~i~l~-----s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~  221 (309)
                      +.++.--     .....-+...  .-.+.  ...++.|+.   +.-..+--.+-| +.+..  .+.+        ++. -
T Consensus       371 ~~vL~YHG~S~dd~v~~ip~~s--y~~p~--~~m~~lLkr---RHLaP~~G~~~p-iape~--~D~l--------vId-~  431 (497)
T PRK04036        371 VDVLIYHGRSIDDVIGLIPGAS--YDKPG--KAMEELLKR---RHLAPIYGGRTP-IAPEK--EDYL--------VID-E  431 (497)
T ss_pred             EEEEEECCCCHHHHHHHCCCCC--CCCHH--HHHHHHHHH---CCCCCCCCCCCC-CCCCC--CCCE--------EEC-C
T ss_conf             7899886876889997575777--57989--999999986---155876589677-79998--7866--------324-8


Q ss_pred             CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCC
Q ss_conf             98199998767532478716998689999576235
Q gi|255764495|r  222 GADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQ  256 (309)
Q Consensus       222 ~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~  256 (309)
                      -.|+..+||+|.......+|    +..  ++|++.
T Consensus       432 vPDif~tGHvH~~~~~~Y~g----v~~--insgtw  460 (497)
T PRK04036        432 VPDIFHTGHVHINGVGNYRG----VLL--VNSGTW  460 (497)
T ss_pred             CCCEEECCCCCEECCCCCCC----EEE--EECCCC
T ss_conf             98617727501001000478----889--823766


No 23 
>KOG2310 consensus
Probab=99.23  E-value=6.7e-09  Score=77.38  Aligned_cols=233  Identities=16%  Similarity=0.191  Sum_probs=122.5

Q ss_pred             CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH-
Q ss_conf             4325532788994111427885410002221000121000001233089999999999626997999937444489989-
Q gi|255764495|r    3 KRYTTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNR-   81 (309)
Q Consensus         3 ~~~~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~-   81 (309)
                      .-|+-+| ||+..||.|+|..++-.                -+..+....++.+++.+.+++.|+|+..|||++...|. 
T Consensus         8 ~D~enti-rILVaTD~HlGY~EkD~----------------vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr   70 (646)
T KOG2310           8 DDFENTI-RILVATDNHLGYGEKDA----------------VRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSR   70 (646)
T ss_pred             CCCCCCE-EEEEEECCCCCCCCCCC----------------CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCH
T ss_conf             3321206-89985157545566775----------------346631777999999887637757985374123578518


Q ss_pred             -HHHHHHHHHHHH----------------------------------CCCCCEEEEECCCCCCCCCHHHHHH-----HHH
Q ss_conf             -999999999861----------------------------------8997189994588422220356766-----432
Q gi|255764495|r   82 -EIFTSTHWLRSI----------------------------------GNPHDISIVPGNHDAYISGAKEKSL-----HAW  121 (309)
Q Consensus        82 -~~~~~~~~~~~l----------------------------------~~~~~v~~v~GNHD~~~~~~~~~~~-----~~~  121 (309)
                       ..-.+.+.++..                                  ...+||+-|-||||.......--.+     ...
T Consensus        71 ~~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~~lsalDIL~~~GL  150 (646)
T KOG2310          71 KTLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDGRLSALDILSAAGL  150 (646)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEECCCCEECCCCCCCEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHCCH
T ss_conf             89999999999970489851468704653001544442001337876532346875168889765554456788775156


Q ss_pred             HHHHCCCCCCCCCCCCCEEEEECCC--EEEEEECCCCCCCCCCCCCEECHHHHHHHHHHH--H----HCCCCCCEEEEEE
Q ss_conf             4543134444455562127997198--799983288888875547600899999999998--5----2433697089998
Q gi|255764495|r  122 KDYITSDTTCSTGKKLFPYLRIRNN--IALIGCSTAIATPPFSANGYFGQEQAHATSKLL--R----KANKKGFFRIIMM  193 (309)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L--~----~~~~~~~~~iv~~  193 (309)
                      -.|+.. .........+|.....|.  +.++||.            .+.++.+-++-..-  .    ......++.+++.
T Consensus       151 VNyFGk-~~~id~I~vsPiLlqKG~tklALYGLg------------~irDeRL~R~Fk~~~V~f~rPe~~e~dWFNllvl  217 (646)
T KOG2310         151 VNYFGK-VSEIDKIDVSPILLQKGSTKLALYGLG------------SIRDERLYRMFKNGKVTFLRPEEYEDDWFNLLVL  217 (646)
T ss_pred             HHHHCC-CCCCCEEEEEEEEECCCCEEEEEEECC------------CCCHHHHHHHHHHCCEEEECCCCCCCCCEEEEEE
T ss_conf             665154-567660798740020674267874046------------6640899999872844895686444452015777


Q ss_pred             ECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCC-CCCCC-CEEEEE
Q ss_conf             3768887643110127978999999874981999987675324787169986899995762357788-88778-548999
Q gi|255764495|r  194 HHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHS-NKPQA-SYNLFY  271 (309)
Q Consensus       194 Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~-~y~li~  271 (309)
                      |..-......   ... .+.|.+   .+ .|+|+.||-|--.....+++.....++.-||...+... +...+ -..+++
T Consensus       218 HQNr~~h~~t---n~l-pE~flp---~F-~DlviWGHEHEC~i~p~~n~~~~F~i~QPGSsVaTSL~~gEa~~Khv~lL~  289 (646)
T KOG2310         218 HQNRSKHRPT---NFL-PEQFLP---DF-LDLVIWGHEHECKIDPQYNAIQGFYILQPGSSVATSLSPGEAKPKHVGLLR  289 (646)
T ss_pred             EECCCCCCCC---CCC-CHHHHH---HH-HHHEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             5036678874---548-576766---55-664242353334347332643351661688722424586545675589999


Q ss_pred             EE
Q ss_conf             95
Q gi|255764495|r  272 IE  273 (309)
Q Consensus       272 i~  273 (309)
                      |.
T Consensus       290 Ik  291 (646)
T KOG2310         290 IK  291 (646)
T ss_pred             EC
T ss_conf             52


No 24 
>TIGR00583 mre11 DNA repair protein (mre11); InterPro: IPR003701   Mre11 and Rad50 are two proteins required for DNA repair and meiosis-specific double-strand break formation in Saccharomyces cerevisiae. Mre11 by itself has 3' to 5' exonuclease activity that is increased when Mre11 is in a complex with Rad50 .    These eukaryotic proteins contain one metallo-phosphoesterase domain followed by an Mre11 DNA-binding domain. S. cerevisiae Mre11 is required for DNA repair and meiosis-specific double-strand break (DSB) formation  and has both 3' to 5' exonuclease activity (which increases when in complex with Rad50) and endonuclease activity. The N-terminal phosphoesterase domain is required for DSB repair, and the carboxyl-terminal dsDNA-binding domain is essential during meiosis for chromatin modification and DSB formation . Schizosaccharomyces pombe rad32 is required for repair of double strand breaks and recombination .  For additional information please see . ; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=99.21  E-value=6.9e-11  Score=90.46  Aligned_cols=236  Identities=17%  Similarity=0.146  Sum_probs=119.8

Q ss_pred             EEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH--HHHHH
Q ss_conf             2788994111427885410002221000121000001233089999999999626997999937444489989--99999
Q gi|255764495|r    9 MFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNR--EIFTS   86 (309)
Q Consensus         9 m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~--~~~~~   86 (309)
                      ..||+--||.|.|..++-.-                ...+....++.+++.+++++.|.|+.+|||++...|.  ..-++
T Consensus         3 tIrILv~tD~HvGY~E~~p~----------------~~~Ds~~tF~Evl~iA~~~~VDMvllgGDLFH~NkPSrk~lYqv   66 (424)
T TIGR00583         3 TIRILVSTDNHVGYGENDPV----------------RGDDSWKTFEEVLQIAKEQDVDMVLLGGDLFHENKPSRKSLYQV   66 (424)
T ss_pred             EEEEEECCCCCCCCCCCCCC----------------CCCCCCCCHHHHHHHHHHCCCCEEEECCCEEECCCCCHHHHHHH
T ss_conf             06898424786475668875----------------57764125689999975089678985681642458407899999


Q ss_pred             HHHHHHH----------------------------------CCCCCEEEEECCCCCCCCCHHHHHHHHHH----HHHCCC
Q ss_conf             9999861----------------------------------89971899945884222203567664324----543134
Q gi|255764495|r   87 THWLRSI----------------------------------GNPHDISIVPGNHDAYISGAKEKSLHAWK----DYITSD  128 (309)
Q Consensus        87 ~~~~~~l----------------------------------~~~~~v~~v~GNHD~~~~~~~~~~~~~~~----~~~~~~  128 (309)
                      .+.|+..                                  ....||+-|-||||..+.....-.+....    -.+.+.
T Consensus        67 l~~LR~~CLg~kPceLElLSDaS~~f~~~~f~~vNY~Dpn~Nv~iPvF~IhGNHDD~SGdg~l~aLDlL~~~GLvN~FGk  146 (424)
T TIGR00583        67 LRSLRLYCLGDKPCELELLSDASVVFEQSAFGNVNYEDPNINVAIPVFSIHGNHDDPSGDGRLCALDLLHATGLVNYFGK  146 (424)
T ss_pred             HHHHHHHHCCCCCEEEEECCCHHHHCCCCCCCEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf             99998762686813211035324414882023004558874140454301266458888855576688876055623564


Q ss_pred             CCCCCCCCCCEEEEECCC--EEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCC---CCCCCC
Q ss_conf             444455562127997198--799983288888875547600899999999998524336970899983768---887643
Q gi|255764495|r  129 TTCSTGKKLFPYLRIRNN--IALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPP---VLDTSS  203 (309)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~--~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp---~~~~~~  203 (309)
                      ......-.-.|.....|.  +.++||.+....+-+.++   .+..+..++=   ...+..++.++++|.+=   ...+..
T Consensus       147 v~e~d~i~V~PiLLqKG~TkLALYGl~~vRDeRL~r~F---k~n~v~F~rP---~~~~~dWFNLl~lHQNhPrr~~Ht~T  220 (424)
T TIGR00583       147 VPESDNIIVSPILLQKGETKLALYGLSNVRDERLFRTF---KDNKVKFLRP---NLRKEDWFNLLVLHQNHPRRAAHTST  220 (424)
T ss_pred             CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCEEEE---ECCCEEEEEC---CCCCCCCEEEEEEECCCCCCCCCCCC
T ss_conf             54456048734432478724445410112110102012---1273588417---77768741000021588664557774


Q ss_pred             CCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCC-----CCEEEEEECCCCCCC--CCCCCCCCEEEEEEE
Q ss_conf             1101279789999998749819999876753247871699-----868999957623577--888877854899995
Q gi|255764495|r  204 LYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEK-----KLIPVVGIASASQKV--HSNKPQASYNLFYIE  273 (309)
Q Consensus       204 ~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~-----~~~~~~~~~s~~~~~--~~~~~~~~y~li~i~  273 (309)
                      ..  +. +|   ++|..+ .|+|+.||-|-=......++.     ....++.=||+-.+.  ..+.-++-..++.|.
T Consensus       221 G~--fL-PE---~~lpdF-~DlviWGHEHEC~~~~~~np~seavG~~F~vlQPGStvATSL~p~E~~pK~~~il~I~  290 (424)
T TIGR00583       221 GS--FL-PE---SFLPDF-LDLVIWGHEHECLPDPVYNPSSEAVGKGFDVLQPGSTVATSLTPGEALPKHVFILNIK  290 (424)
T ss_pred             CC--CC-CH---HHHHHH-HHHEEECCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCEEEEEEEC
T ss_conf             24--26-13---420345-6351305114523488626630013787668738862110578436367447887402


No 25 
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=99.20  E-value=3.3e-09  Score=79.41  Aligned_cols=207  Identities=16%  Similarity=0.119  Sum_probs=91.1

Q ss_pred             CCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH----HCCCC-EEEECCCCCCCCCHH
Q ss_conf             5327889941114278854100022210001210000012330899999999996----26997-999937444489989
Q gi|255764495|r    7 TIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDIL----LHNVD-HVSITGDIVNFTCNR   81 (309)
Q Consensus         7 ~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~----~~~pD-~vvitGDl~~~~~~~   81 (309)
                      +.-++|+|++|+|=--.+..                  ......+.+..+++.++    +.+|+ +++.+||+++.....
T Consensus        32 ~~~ltilhtnD~Hg~~~~~~------------------~~~~G~a~~at~i~~~R~e~~a~~~n~llldaGD~~qGt~~s   93 (551)
T PRK09558         32 TYKITVLHTNDHHGHFWRNE------------------YGEYGLAARKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPES   93 (551)
T ss_pred             CEEEEEEEECCCCCCCCCCC------------------CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf             57999998455556776766------------------788579999999999999985259987999588555677460


Q ss_pred             HH---HHHHHHHHHHCCCCCEEEEECCCCCCCCCHHH-HHHH-HHHHHHCCCCC-C-CCCCCCCE-EEEECCCE--EEEE
Q ss_conf             99---99999998618997189994588422220356-7664-32454313444-4-45556212-79971987--9998
Q gi|255764495|r   82 EI---FTSTHWLRSIGNPHDISIVPGNHDAYISGAKE-KSLH-AWKDYITSDTT-C-STGKKLFP-YLRIRNNI--ALIG  151 (309)
Q Consensus        82 ~~---~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~-~~~~-~~~~~~~~~~~-~-~~~~~~~~-~~~~~~~~--~~i~  151 (309)
                      .+   +...+++..+.  +. .+++||||.-.....- .... .-.++...... . .......+ .....+++  .+||
T Consensus        94 ~l~~g~p~i~~mN~lg--yD-a~tlGNHEFD~G~~~l~~~~~~a~fP~LsANi~~~~~g~~~~~py~I~e~~G~kVGiIG  170 (551)
T PRK09558         94 DLQDAEPDFRGMNLIG--YD-AMAVGNHEFDNPLSVLRKQEKWAKFPFLSANIYQKSTGERLFKPYKIFDVQGLKIAVIG  170 (551)
T ss_pred             HHCCCCHHHHHHHCCC--CC-EEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEEEEECCEEEEEEE
T ss_conf             4228807999986189--88-89777544557878999998527997798665677889815577699997996999997


Q ss_pred             ECCCCCC---CCCCCCCEECHHHHHHHHHHHHHCCC-CCCE-EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
Q ss_conf             3288888---87554760089999999999852433-6970-89998376888764311012797899999987498199
Q gi|255764495|r  152 CSTAIAT---PPFSANGYFGQEQAHATSKLLRKANK-KGFF-RIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLI  226 (309)
Q Consensus       152 l~s~~~~---~~~~~~g~~~~~q~~~l~~~L~~~~~-~~~~-~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lv  226 (309)
                      +-+....   .|....+....+-.+-+++..++.+. ++.. +|++.|-....... ......+-..+.+.+...++|++
T Consensus       171 l~t~~t~~~~~p~~~~~~~f~d~ve~~~~~v~~Lr~~~g~DiII~L~H~G~~~d~~-~~~~~~~d~~lA~~~~~~gIDvI  249 (551)
T PRK09558        171 LTTEDTAKIGNPEYITDLEFRDPAEEAKKVIPELKQTEKPDIIIALTHMGHYADGE-HGSNAPGDVTMARALPAGSLDMI  249 (551)
T ss_pred             CCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-CCCCCCHHHHHHHHCCCCCCEEE
T ss_conf             15656301258455589557289999999999998538999899995566446655-45567316999974775685099


Q ss_pred             EECCCCCCE
Q ss_conf             998767532
Q gi|255764495|r  227 LHGHTHLNS  235 (309)
Q Consensus       227 l~GH~H~~~  235 (309)
                      +.||+|...
T Consensus       250 igGHsH~~~  258 (551)
T PRK09558        250 IGGHSQDPV  258 (551)
T ss_pred             EECCCCCEE
T ss_conf             807877500


No 26 
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=99.17  E-value=5.2e-09  Score=78.11  Aligned_cols=262  Identities=15%  Similarity=0.123  Sum_probs=123.8

Q ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCHHHHH
Q ss_conf             55327889941114278854100022210001210000012330899999999996269979999-37444489989999
Q gi|255764495|r    6 TTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSI-TGDIVNFTCNREIF   84 (309)
Q Consensus         6 ~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvi-tGDl~~~~~~~~~~   84 (309)
                      .|+-+||+..||||--.            ..|--+...............+++.++++.|+.|++ .||+.+.....+|.
T Consensus        39 ~tV~LrIl~TTDlH~~l------------~~yDYy~d~~~~~~GLar~AtLI~~~R~e~~NtlLvDNGD~iQGtPl~dy~  106 (1260)
T PRK09419         39 KTVNISILATTDLHANM------------MDYDYYSDKETAGFGLAQTATLIEKARKENPNTLLVDNGDLIQGNPLGEYA  106 (1260)
T ss_pred             CEEEEEEEEECCCCCCC------------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHH
T ss_conf             74899998530344566------------685002699688768999999999999648984999688512677067888


Q ss_pred             HHHHH------------HHHHC-CCCCEEEEECCCCCCCCCHH-HHHHHH-HHHHHCCCCCC-CCCCCCCEEEEEC----
Q ss_conf             99999------------98618-99718999458842222035-676643-24543134444-4555621279971----
Q gi|255764495|r   85 TSTHW------------LRSIG-NPHDISIVPGNHDAYISGAK-EKSLHA-WKDYITSDTTC-STGKKLFPYLRIR----  144 (309)
Q Consensus        85 ~~~~~------------~~~l~-~~~~v~~v~GNHD~~~~~~~-~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~----  144 (309)
                      ...+-            +..+. ..+.. ..+||||+-....+ .+.... -.++....... .......||....    
T Consensus       107 a~~~~~~~~~~~~~HPmi~AMN~LgYDa-~tLGNHEFNYGLd~L~~~i~~a~fPvl~ANv~~~~g~~~f~PY~I~er~~~  185 (1260)
T PRK09419        107 VKYEKDNIIFGNKTHPIILVMNALGYDA-GTLGNHEFNYGLDFLDGTIKGANLPIVNANLKTLDGKRVYTPYTIKDKTLT  185 (1260)
T ss_pred             HHHCCCCCCCCCCCCHHHHHHHHCCCCE-ECCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEEEEEE
T ss_conf             7515455567899788999976508876-324465421578999999855999889656564899875488799988762


Q ss_pred             ------C--CEEEEEECCCCCCCCCCC--CCEE-CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf             ------9--879998328888887554--7600-8999999999985243369708999837688876431101279789
Q gi|255764495|r  145 ------N--NIALIGCSTAIATPPFSA--NGYF-GQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQR  213 (309)
Q Consensus       145 ------~--~~~~i~l~s~~~~~~~~~--~g~~-~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~  213 (309)
                            .  .+.++|+-......|...  .|.+ ..+-.+-.++...+.++.+..+||+.-|--..... ......|+  
T Consensus       186 d~~g~~~~vKVGiiG~vpPqI~~WDk~~L~Gkv~~~Dive~A~~~Vp~mk~~GADvVIalaHsGi~~~~-~~~g~ENa--  262 (1260)
T PRK09419        186 DENGRKHGVKVGYIGFVPPQIMTWDKKNLKGQYEVKDITESAKETIPEMKEGGADVYIALAHSGIEKEA-QSYGAENS--  262 (1260)
T ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCHHHCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-CCCCCCHH--
T ss_conf             588872554999993279986535587755857977999999999999987599989995265778887-77776408--


Q ss_pred             HHHHHHH-CCCEEEEECCCCCCEEEEE-------ECCC---CCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEE
Q ss_conf             9999987-4981999987675324787-------1699---868999957623577888877854899995389838999
Q gi|255764495|r  214 FQKMIWH-EGADLILHGHTHLNSLHWI-------KNEK---KLIPVVGIASASQKVHSNKPQASYNLFYIEKKNEYWTLE  282 (309)
Q Consensus       214 l~~~l~~-~~v~lvl~GH~H~~~~~~~-------~~~~---~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~~~~~v~  282 (309)
                      ...+..+ .++|++++||.|.-.-...       +...   ..+|++..+.-++.       -|-=-++++.+++.|+|.
T Consensus       263 ~~~LA~~v~GIDAIv~GHsH~~fP~~~~~~~~~~d~~~gtingvpvvmPg~wG~~-------Lg~IDL~L~~~~~~W~V~  335 (1260)
T PRK09419        263 AFDLAEKNPGIDAIVSGHQHGLFPSAEYPGVDQFNVKKGTINGIPVVMPKSWGKY-------VGKIDLTLEKDGSKWKVL  335 (1260)
T ss_pred             HHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCEEEECCCHHHCE-------EEEEEEEEEECCCEEEEE
T ss_conf             9999862999767980775603577434566555344440787677667546473-------569999999749989995


Q ss_pred             EEEEECCC
Q ss_conf             99951377
Q gi|255764495|r  283 GKRYTLSP  290 (309)
Q Consensus       283 ~~r~~~~~  290 (309)
                      -.+-...+
T Consensus       336 ~~~~~~~~  343 (1260)
T PRK09419        336 DKKAKLES  343 (1260)
T ss_pred             CCEEEEEE
T ss_conf             47647876


No 27 
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=99.12  E-value=9.7e-09  Score=76.33  Aligned_cols=228  Identities=18%  Similarity=0.188  Sum_probs=111.3

Q ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CEEEECCCCCCCCCHHHH-
Q ss_conf             553278899411142788541000222100012100000123308999999999962699-799993744448998999-
Q gi|255764495|r    6 TTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNV-DHVSITGDIVNFTCNREI-   83 (309)
Q Consensus         6 ~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~p-D~vvitGDl~~~~~~~~~-   83 (309)
                      ...-++|+|++|+|=-..+-.....            ... .........+++.++++.+ .++|-+||+.+......+ 
T Consensus        23 ~~~~l~ilhtnD~H~~l~~~~~~~~------------~~~-~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~   89 (517)
T COG0737          23 ETVKLTILHTNDLHGHLEPYDYDDD------------GDT-DGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYL   89 (517)
T ss_pred             CCEEEEEEEECCHHHCCCCCCCCCC------------CCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHCC
T ss_conf             6415899982342314231233445------------545-477899999999998647984999278757884501136


Q ss_pred             ---HHHHHHHHHHCCCCCEEEEECCCCCCCCCHH-HHHH-HHHHHHHCCCCCCC---CCCCCCEE-EEECCCE--EEEEE
Q ss_conf             ---9999999861899718999458842222035-6766-43245431344444---55562127-9971987--99983
Q gi|255764495|r   84 ---FTSTHWLRSIGNPHDISIVPGNHDAYISGAK-EKSL-HAWKDYITSDTTCS---TGKKLFPY-LRIRNNI--ALIGC  152 (309)
Q Consensus        84 ---~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~-~~~~-~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~--~~i~l  152 (309)
                         ....+++..+.  +. ....|||+....... .+.. ....++........   ......+| ....+++  .+||+
T Consensus        90 ~~g~~~~~~mN~m~--yD-a~tiGNHEFd~g~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~  166 (517)
T COG0737          90 TKGEPTVDLLNALG--YD-AMTLGNHEFDYGLEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGL  166 (517)
T ss_pred             CCCCHHHHHHHCCC--CC-EEEECCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCEEEEEEEE
T ss_conf             67875899986469--87-8951353334578999998740578779867863587776777876999619879999985


Q ss_pred             CCCCCCCCCCC---CCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEC
Q ss_conf             28888887554---760089999999999852433697089998376888764311012797899999987498199998
Q gi|255764495|r  153 STAIATPPFSA---NGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHG  229 (309)
Q Consensus       153 ~s~~~~~~~~~---~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~G  229 (309)
                      .+.....+...   .+.......+++++.+.+.+.++...||+.-|-...............-.+.   . .++|+++.|
T Consensus       167 ~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~~~~~~~~~---~-~~iD~i~~G  242 (517)
T COG0737         167 TTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASEVPGDVDVA---V-PGIDLIIGG  242 (517)
T ss_pred             CCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCCCCCC---C-CCCCEEEEC
T ss_conf             145432344656557816667999999999998735798999912678663345542266520235---5-667558835


Q ss_pred             CCCCCEEEEE-ECCCCCEEEEEECC
Q ss_conf             7675324787-16998689999576
Q gi|255764495|r  230 HTHLNSLHWI-KNEKKLIPVVGIAS  253 (309)
Q Consensus       230 H~H~~~~~~~-~~~~~~~~~~~~~s  253 (309)
                      |.|+...... .+..+.++++.+++
T Consensus       243 H~H~~~~~~~~~~~~~~t~ivqag~  267 (517)
T COG0737         243 HSHTVFPGGDKPGTVNGTPIVQAGE  267 (517)
T ss_pred             CCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf             7774446775457658889996687


No 28 
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=99.05  E-value=1.4e-07  Score=68.74  Aligned_cols=256  Identities=14%  Similarity=0.134  Sum_probs=123.6

Q ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-EEEECCCCCCCCCHHHHH
Q ss_conf             5532788994111427885410002221000121000001233089999999999626997-999937444489989999
Q gi|255764495|r    6 TTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVD-HVSITGDIVNFTCNREIF   84 (309)
Q Consensus         6 ~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD-~vvitGDl~~~~~~~~~~   84 (309)
                      +|+-+||+-.||||--.            ..|..+.+.............+++.++++.++ +++-.||+.+...-.+|.
T Consensus       112 ~tV~LRILeTTDlH~nl------------~~YDYY~Dkp~~~~GLaRtAtLI~~aR~E~~NslLvDNGD~iQGsPLgDY~  179 (810)
T PRK11907        112 QTVDVRILSTTDLHTNL------------VNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNTVLVDNGDTIQGTPLGTYK  179 (810)
T ss_pred             CEEEEEEEEECCCCCCC------------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHH
T ss_conf             43679998411200045------------675103699777634789999999998636874998478401677205467


Q ss_pred             HHHH------------HHHHHCCCCCEEEEECCCCCCCCCHHHHH-H-HHHHHHHCCCCC-C-CCCCCCCEEEEE-----
Q ss_conf             9999------------99861899718999458842222035676-6-432454313444-4-455562127997-----
Q gi|255764495|r   85 TSTH------------WLRSIGNPHDISIVPGNHDAYISGAKEKS-L-HAWKDYITSDTT-C-STGKKLFPYLRI-----  143 (309)
Q Consensus        85 ~~~~------------~~~~l~~~~~v~~v~GNHD~~~~~~~~~~-~-~~~~~~~~~~~~-~-~~~~~~~~~~~~-----  143 (309)
                      ...+            .+..|  .+.+ ...||||+-....+-.. . ..-.++...... . .......+|...     
T Consensus       180 A~~~~~~~g~~HP~~~AMN~L--gYDA-~tLGNHEFNYGLdfL~~~l~~A~FPvV~ANV~d~~t~~p~f~PY~Iler~v~  256 (810)
T PRK11907        180 AIVDPVAEGEQHPMYAALEAL--GYDA-GTLGNHEFNYGLDYLKKVIATANMPIVNANVLDPKTGDFVYKPYKIITKTFT  256 (810)
T ss_pred             HHCCCCCCCCCCHHHHHHHHH--CCCE-ECCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf             530677778758799998750--8752-0245554334789999998559998884412358889815477699998877


Q ss_pred             -CC------CEEEEEECCCCCCCCC--CCCCEEC-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf             -19------8799983288888875--5476008-999999999985243369708999837688876431101279789
Q gi|255764495|r  144 -RN------NIALIGCSTAIATPPF--SANGYFG-QEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQR  213 (309)
Q Consensus       144 -~~------~~~~i~l~s~~~~~~~--~~~g~~~-~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~  213 (309)
                       .+      .+.++|+-......|.  .-.|++. .+..+-.+....+.+.+|..+||++-|--+.... .....+|+. 
T Consensus       257 D~~G~~~~lKIGvIGfvPPQIm~WDk~~LeGkV~~~DIVetA~~~VP~Mka~GADvIIALaHSGi~~~~-~~~~~ENa~-  334 (810)
T PRK11907        257 DTTGRKVTLNIGITGIVPPQILNWDKANLEGKVIVRDSVEAIRDIVPTMRAAGADIILVLSHSGIGDDR-YEKGEENVG-  334 (810)
T ss_pred             CCCCCEEEEEEEEEECCCCCCEEECHHHCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-CCCCHHHHH-
T ss_conf             689987437899996259742153185763976955689999999999987489899992365777887-774202456-


Q ss_pred             HHHHHHHCCCEEEEECCCCCCEEE--------EEE------CCCCCEEEEEECCCCCCCCCCCCCCCEEEE--EEECCCC
Q ss_conf             999998749819999876753247--------871------699868999957623577888877854899--9953898
Q gi|255764495|r  214 FQKMIWHEGADLILHGHTHLNSLH--------WIK------NEKKLIPVVGIASASQKVHSNKPQASYNLF--YIEKKNE  277 (309)
Q Consensus       214 l~~~l~~~~v~lvl~GH~H~~~~~--------~~~------~~~~~~~~~~~~s~~~~~~~~~~~~~y~li--~i~~~~~  277 (309)
                       ..+-+-.|+|.|++||.|.-+-.        .+.      |.-..+|+++.+.-         ..--.+|  .++.+++
T Consensus       335 -~~LA~V~GIDAIl~GHsH~vFPs~~~~~~~~~~~gvD~~kGtinGvPaVMpG~w---------GsHLGvIDL~L~~~~g  404 (810)
T PRK11907        335 -YQIASIKGVDAVVTGHSHAEFPSGNGTGFYEKYPGVDGINGKINGTPVTMAGKY---------GDHLGIIDLKLSYTDG  404 (810)
T ss_pred             -HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC---------CCEEEEEEEEEEECCC
T ss_conf             -776338986579716654126798665300146776422363887640567642---------2502148778897299


Q ss_pred             EEEEEEEEEEC
Q ss_conf             38999999513
Q gi|255764495|r  278 YWTLEGKRYTL  288 (309)
Q Consensus       278 ~~~v~~~r~~~  288 (309)
                      .|+|.-.+-..
T Consensus       405 ~W~V~~~~a~~  415 (810)
T PRK11907        405 KWKVTESKAKI  415 (810)
T ss_pred             EEEEECCEEEE
T ss_conf             78992465147


No 29 
>pfam09423 PhoD PhoD-like phosphatase.
Probab=98.92  E-value=8.8e-07  Score=63.46  Aligned_cols=196  Identities=13%  Similarity=0.059  Sum_probs=107.7

Q ss_pred             HHHCCCCEEEECCCCCC-CC-----------------------CHHHHHHHH------HHHHHHCCCCCEEEEECCCCCC
Q ss_conf             96269979999374444-89-----------------------989999999------9998618997189994588422
Q gi|255764495|r   60 ILLHNVDHVSITGDIVN-FT-----------------------CNREIFTST------HWLRSIGNPHDISIVPGNHDAY  109 (309)
Q Consensus        60 i~~~~pD~vvitGDl~~-~~-----------------------~~~~~~~~~------~~~~~l~~~~~v~~v~GNHD~~  109 (309)
                      ++...+|+||+.||.+- .+                       +..+|+.-.      .-++.+....|++++--+||+.
T Consensus       128 a~~~~~D~vlhlGDyIYE~~~~~~~~~~~~~~~~~~~p~~e~~tL~dYR~rya~y~~D~~Lq~~ha~~P~i~~WDDHEv~  207 (450)
T pfam09423       128 ARRDDPDFVLHLGDYIYEYGPIGGGGYGNLVREEKGRPAHEIVTLADYRGRYAQYKSDPDLQAAHAAVPWIVTWDDHEVA  207 (450)
T ss_pred             HHCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCHHHHHHHHHCCEEEEECCCCCC
T ss_conf             61259988996287675406776655455554445788651414999999999870699899998629889872675201


Q ss_pred             CCCH-----------------HHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC-EEEEEECCCCCCCCC----------
Q ss_conf             2203-----------------567664324543134444455562127997198-799983288888875----------
Q gi|255764495|r  110 ISGA-----------------KEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNN-IALIGCSTAIATPPF----------  161 (309)
Q Consensus       110 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~s~~~~~~~----------  161 (309)
                      ....                 .......|.+|+.-...........+.....|. ..+++||+-.+....          
T Consensus       208 Nd~~~~ga~~~~~~e~~~~~rr~aA~qAy~E~mPiR~~~~~~~~~iYR~f~~G~La~l~~LDtR~yr~~~~~~~~~~~~~  287 (450)
T pfam09423       208 NNWAGDGAENHQEDEGDFDARRAAAYQAYYEWMPIRPPPPGDDLRIYRSFRYGDLADLFMLDTRQYRRDQPLGNKADCPE  287 (450)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf             67523444357877630899999999999975766578889884278873035830035653133366533466766310


Q ss_pred             ---CCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC------------CCCCCCCCCCCHHHHHHHHHHCCCE--
Q ss_conf             ---54760089999999999852433697089998376888------------7643110127978999999874981--
Q gi|255764495|r  162 ---SANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVL------------DTSSLYNRMFGIQRFQKMIWHEGAD--  224 (309)
Q Consensus       162 ---~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~------------~~~~~~~~~~~~~~l~~~l~~~~v~--  224 (309)
                         ...-.++.+|++||.+.|++.+  .++.|+..-.|...            ..+.|..-...++++.+.+++.++.  
T Consensus       288 ~~dp~rtmLG~~Q~~WL~~~L~~S~--a~Wkvi~~qv~~~~~~~~~~~~~~~~n~D~WdGY~aeR~rll~~i~~~~i~N~  365 (450)
T pfam09423       288 VDDPDRTLLGAEQEQWLKRGLAAST--ATWKVIAQQVPFGRLVPDAGPGGLPYNLDAWDGYPAERERLLRFIKDAGIRNV  365 (450)
T ss_pred             HCCCCCCCCCHHHHHHHHHHHHCCC--CCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf             0386555489889999998885189--84399986001331236876444546788878719999999999997399986


Q ss_pred             EEEECCCCCCEEEEEEC-----CCCC-E-EEEEECCCCCC
Q ss_conf             99998767532478716-----9986-8-99995762357
Q gi|255764495|r  225 LILHGHTHLNSLHWIKN-----EKKL-I-PVVGIASASQK  257 (309)
Q Consensus       225 lvl~GH~H~~~~~~~~~-----~~~~-~-~~~~~~s~~~~  257 (309)
                      ++|.|-+|......+.-     +.+. + .-+.++|.++.
T Consensus       366 V~LtGD~H~~~a~~l~~d~~~~~~~~~v~~EF~~~svtS~  405 (450)
T pfam09423       366 VVLTGDVHYAWANDLKPDRADFPDSGAVGVEFVTTSVSSG  405 (450)
T ss_pred             EEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf             9995056777885277653346679942899828974799


No 30 
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.89  E-value=6e-07  Score=64.53  Aligned_cols=205  Identities=17%  Similarity=0.159  Sum_probs=98.8

Q ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-EEEECCCCCCCCCHH---
Q ss_conf             5532788994111427885410002221000121000001233089999999999626997-999937444489989---
Q gi|255764495|r    6 TTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVD-HVSITGDIVNFTCNR---   81 (309)
Q Consensus         6 ~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD-~vvitGDl~~~~~~~---   81 (309)
                      ++.-++|+|+.|+|=.-                         .....+...++.+++++|. +++.+||.++...-.   
T Consensus       662 ~~~~l~v~htND~H~~l-------------------------~~~ak~~~~IKe~RaenpNtLlLdAGD~fqGtl~snl~  716 (1260)
T PRK09419        662 VTWNLTVMHTNDTHAHL-------------------------DGAARRVGKIKEVREENPNTILLDAGDVFSGDLYFTKW  716 (1260)
T ss_pred             CEEEEEEEEECCCHHHH-------------------------HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEHHH
T ss_conf             45777888604542434-------------------------42788999999987439975999677567760401120


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHH-HHHHHH----------------HHHHHCCCCC-----CC-------
Q ss_conf             999999999861899718999458842222035-676643----------------2454313444-----44-------
Q gi|255764495|r   82 EIFTSTHWLRSIGNPHDISIVPGNHDAYISGAK-EKSLHA----------------WKDYITSDTT-----CS-------  132 (309)
Q Consensus        82 ~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~-~~~~~~----------------~~~~~~~~~~-----~~-------  132 (309)
                      .-+...+++..+.-.   .+++|||++-..... .++...                -.++......     ..       
T Consensus       717 kGea~~e~MN~mGyD---AmtvGNHEFD~G~~~L~~f~~g~~~~~d~~~~~~~~~a~FPvLsANv~~~~t~~l~~~~k~~  793 (1260)
T PRK09419        717 KGLADLKMMNMMGYD---AMTFGNHEFDKGPDVLPDFLKGGYSAVDPLNRHQFEKPEFPFVSSNVDVSKEGKLVSWAKKP  793 (1260)
T ss_pred             CCHHHHHHHHHCCCC---EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHCCCC
T ss_conf             898999998733977---88115556667778999987346655543222222236898898886536887510000144


Q ss_pred             --------CCCCCCEE-EEECCC--EEEEEECCCC---CCCCCCCCCEECHHHHHHHHHHHHHCCC-CCCEEEEEEECCC
Q ss_conf             --------55562127-997198--7999832888---8887554760089999999999852433-6970899983768
Q gi|255764495|r  133 --------TGKKLFPY-LRIRNN--IALIGCSTAI---ATPPFSANGYFGQEQAHATSKLLRKANK-KGFFRIIMMHHPP  197 (309)
Q Consensus       133 --------~~~~~~~~-~~~~~~--~~~i~l~s~~---~~~~~~~~g~~~~~q~~~l~~~L~~~~~-~~~~~iv~~Hhpp  197 (309)
                              ......|| +.+.++  +.|||+.+..   ...|..  +-...+..+.+++..++.+. .+...||++.|--
T Consensus       794 ~~~~a~~~~~~~i~PY~I~Ev~G~KIGIIGltT~eT~~~ssP~~--~v~F~D~vetaq~~V~eLk~~~GVd~II~LsHlG  871 (1260)
T PRK09419        794 ATFTAGKKKEAGIYPYILLDVNGEKVGVFGLTTEDTAYTSSPGK--NIEFKDAYESAEKTVKELQEKEKVNKIIALTHIG  871 (1260)
T ss_pred             CCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCCCCCCCC--CCEECCHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             43333333445669838999899999999852688755668999--9667379999999999998636999899996788


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHH-CCCEEEEECCCCCCEEEEE-ECCCCCEEEEEECC
Q ss_conf             88764311012797899999987-4981999987675324787-16998689999576
Q gi|255764495|r  198 VLDTSSLYNRMFGIQRFQKMIWH-EGADLILHGHTHLNSLHWI-KNEKKLIPVVGIAS  253 (309)
Q Consensus       198 ~~~~~~~~~~~~~~~~l~~~l~~-~~v~lvl~GH~H~~~~~~~-~~~~~~~~~~~~~s  253 (309)
                      ..         .+    .++.++ .++|+|+.||.|...-... .+...+++++.+.+
T Consensus       872 ~~---------~D----~~lA~~V~GIDVIIgGHSHTll~~~~~v~~~ngt~IVQA~~  916 (1260)
T PRK09419        872 SN---------RD----LELAEKVKGIDLIIGGHTHTLVDKLKVVGNVEPTIVAQAKK  916 (1260)
T ss_pred             CC---------CC----HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCH
T ss_conf             63---------23----99997089998897288887778763147868779998681


No 31 
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=98.88  E-value=1.1e-07  Score=69.32  Aligned_cols=186  Identities=20%  Similarity=0.166  Sum_probs=96.2

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC-----CCCEEEECCCCCCCC------
Q ss_conf             788994111427885410002221000121000001233089999999999626-----997999937444489------
Q gi|255764495|r   10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLH-----NVDHVSITGDIVNFT------   78 (309)
Q Consensus        10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~-----~pD~vvitGDl~~~~------   78 (309)
                      .+.+.|||+|.|..                       .+....+...++.++..     +...++++||+++..      
T Consensus       226 v~v~~isDih~GSk-----------------------~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq  282 (481)
T COG1311         226 VYVALISDIHRGSK-----------------------EFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQ  282 (481)
T ss_pred             EEEEEEEEEECCCH-----------------------HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf             57999761110528-----------------------8888899999998638754321237999705521343444686


Q ss_pred             --------CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC-CCCCCCEEEEECCCEEE
Q ss_conf             --------989999999999861899718999458842222035676643245431344444-55562127997198799
Q gi|255764495|r   79 --------CNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCS-TGKKLFPYLRIRNNIAL  149 (309)
Q Consensus        79 --------~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  149 (309)
                              ..+.|+.+.+++..+..-..|++.|||||.............   +.+...... ......|+....++..+
T Consensus       283 ~~eL~i~di~~qy~~~A~~L~~vp~~I~v~i~PGnhDa~r~a~PQp~~~~---~~kslf~~~n~~~v~NP~~~~l~G~~v  359 (481)
T COG1311         283 EEELVIADIYEQYEELAEFLDQVPEHIKVFIMPGNHDAVRQALPQPHFPE---LIKSLFSLNNLLFVSNPALVSLHGVDV  359 (481)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCH---HHCCCCCCCCEEECCCCCEEEECCEEE
T ss_conf             12100055167899999988538777569981588875541358877511---202331026537617973798888899


Q ss_pred             EEE-----CCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCC-CCHHHHHHHHHHCCC
Q ss_conf             983-----28888887554760089999999999852433697089998376888764311012-797899999987498
Q gi|255764495|r  150 IGC-----STAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRM-FGIQRFQKMIWHEGA  223 (309)
Q Consensus       150 i~l-----~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~-~~~~~l~~~l~~~~v  223 (309)
                      +.-     |-....-|...    .+.-...+++.|+.           -|-.|..+...+.... .|.   . ++.+ -.
T Consensus       360 L~~hG~sidDii~~vP~~~----~~~~~~ame~lLk~-----------rHlaPtygg~~p~aP~~kD~---l-VIee-vP  419 (481)
T COG1311         360 LIYHGRSIDDIIKLVPGAD----YDSPLKAMEELLKR-----------RHLAPTYGGTLPIAPETKDY---L-VIEE-VP  419 (481)
T ss_pred             EEECCCCHHHHHHHCCCCC----CCCHHHHHHHHHHH-----------CCCCCCCCCCCCCCCCCCCC---E-EECC-CC
T ss_conf             9854899899986477877----32467899999986-----------14578889952026677685---5-6505-88


Q ss_pred             EEEEECCCCCCEEEEEEC
Q ss_conf             199998767532478716
Q gi|255764495|r  224 DLILHGHTHLNSLHWIKN  241 (309)
Q Consensus       224 ~lvl~GH~H~~~~~~~~~  241 (309)
                      |++.+||+|........|
T Consensus       420 Dv~~~Ghvh~~g~~~y~g  437 (481)
T COG1311         420 DVFHTGHVHKFGTGVYEG  437 (481)
T ss_pred             CEEEECCCCCCCEEEEEC
T ss_conf             679976602212038862


No 32 
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=98.88  E-value=1.5e-07  Score=68.42  Aligned_cols=146  Identities=17%  Similarity=0.168  Sum_probs=81.3

Q ss_pred             CEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CEEEECCCCCCCCCHHHHHHH
Q ss_conf             3278899411142788541000222100012100000123308999999999962699-799993744448998999999
Q gi|255764495|r    8 IMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNV-DHVSITGDIVNFTCNREIFTS   86 (309)
Q Consensus         8 ~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~p-D~vvitGDl~~~~~~~~~~~~   86 (309)
                      .|..+-.+||+|||..--. .+         +.. .+-.++...++..+.   +..+| |.|.+.||++.....+  ..+
T Consensus         2 sm~mmyfisDtHfgh~nvi-~~---------~pf-sn~~ehd~vil~N~n---ntv~p~D~lwhLGDl~~~~n~~--~~a   65 (186)
T COG4186           2 SMTMMYFISDTHFGHKNVI-SM---------RPF-SNPDEHDEVILSNWN---NTVGPDDVLWHLGDLSSGANRE--RAA   65 (186)
T ss_pred             CEEEEEEECCCCCCCCCEE-EC---------CCC-CCHHHHHHHHHHHHH---HCCCCCCEEEEECCCCCCCCHH--HHH
T ss_conf             5058999504555874415-50---------887-887777599998687---5278443688811101145526--589


Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCE
Q ss_conf             99998618997189994588422220356766432454313444445556212799719879998328888887554760
Q gi|255764495|r   87 THWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGY  166 (309)
Q Consensus        87 ~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~  166 (309)
                      ..+++.|...  +..|+||||..-......                                                 .
T Consensus        66 ~~IlerLnGr--khlv~GNhDk~~~~~~~~-------------------------------------------------~   94 (186)
T COG4186          66 GLILERLNGR--KHLVPGNHDKCHPMYRHA-------------------------------------------------Y   94 (186)
T ss_pred             HHHHHHCCCC--EEEEECCCCCCCCCCCCH-------------------------------------------------H
T ss_conf             9999976993--899607888876200000-------------------------------------------------2


Q ss_pred             ECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             08999999999985243369708999837688876431101279789999998749819999876753
Q gi|255764495|r  167 FGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLN  234 (309)
Q Consensus       167 ~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~  234 (309)
                        .+..+.+    +...-++. .+++.|+|--......       .+.+..-.+-.+.++++||.|.+
T Consensus        95 --~~svq~f----~~ie~dg~-~~~LsHyP~~~~~~~~-------~~~r~~y~~~~~~llIHGH~H~~  148 (186)
T COG4186          95 --FDSVQAF----QRIEWDGE-DVYLSHYPRPGQDHPG-------MESRFDYLRLRVPLLIHGHLHSQ  148 (186)
T ss_pred             --HHHHHHH----HHEEECCE-EEEEEECCCCCCCCCC-------HHHHHHHHHCCCCEEEECCCCCC
T ss_conf             --6788887----73057886-8999827999888743-------03567787515876882232443


No 33 
>KOG3662 consensus
Probab=98.66  E-value=1.9e-06  Score=61.24  Aligned_cols=95  Identities=13%  Similarity=0.035  Sum_probs=57.1

Q ss_pred             CCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH-HCCCCEEEECCCCCCCC---CHHH
Q ss_conf             5327889941114278854100022210001210000012330899999999996-26997999937444489---9899
Q gi|255764495|r    7 TIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDIL-LHNVDHVSITGDIVNFT---CNRE   82 (309)
Q Consensus         7 ~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~-~~~pD~vvitGDl~~~~---~~~~   82 (309)
                      +-.+||+-++|+|+=-..     ..+....++..-.      ..-.+.+....+. -.+||.+++.|||++.|   .++|
T Consensus        46 ~n~~ki~~vaDPQilg~~-----~~~~~~~~Ldk~~------~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eE  114 (410)
T KOG3662          46 ENSTKILLVADPQILGNW-----PKKFLVSWLDKYG------NDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEE  114 (410)
T ss_pred             CCCEEEEEECCCHHCCCC-----CCCCCCCHHHHHH------HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHH
T ss_conf             885699995084322777-----8766552687642------48999999998874059977998500004675588599


Q ss_pred             HHHHHHHHHHHCC---CCCEEEEECCCCCCCCC
Q ss_conf             9999999986189---97189994588422220
Q gi|255764495|r   83 IFTSTHWLRSIGN---PHDISIVPGNHDAYISG  112 (309)
Q Consensus        83 ~~~~~~~~~~l~~---~~~v~~v~GNHD~~~~~  112 (309)
                      |..-.+.+..+..   ..++..+|||||.....
T Consensus       115 f~~~~~RfkkIf~~k~~~~~~~i~GNhDIGf~~  147 (410)
T KOG3662         115 FKKRYERFKKIFGRKGNIKVIYIAGNHDIGFGN  147 (410)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
T ss_conf             999999999860887887248957966545664


No 34 
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=98.52  E-value=1.5e-05  Score=55.26  Aligned_cols=208  Identities=15%  Similarity=0.150  Sum_probs=90.3

Q ss_pred             EEEECCCCCCCCCHHHHHHHH-----------HHHHHHCCCCCEEEEECCCCCCCCCHH-HHHHHH-HHHHHCCCCCC--
Q ss_conf             999937444489989999999-----------999861899718999458842222035-676643-24543134444--
Q gi|255764495|r   67 HVSITGDIVNFTCNREIFTST-----------HWLRSIGNPHDISIVPGNHDAYISGAK-EKSLHA-WKDYITSDTTC--  131 (309)
Q Consensus        67 ~vvitGDl~~~~~~~~~~~~~-----------~~~~~l~~~~~v~~v~GNHD~~~~~~~-~~~~~~-~~~~~~~~~~~--  131 (309)
                      ++|-.||+.+...-..|....           ..+..|  .+. ..++||||+-..... .+.... -.++.......  
T Consensus         1 lLvDnGD~iQGsPl~~y~a~~~~~~~~~hPm~~aMN~l--gYD-a~tLGNHEFNyGld~L~~~i~~a~fPvl~ANv~~~~   77 (578)
T PRK09420          1 VLVDNGDLIQGSPMGDYMAAKGLKAGDVHPVYKAMNTL--DYD-VGNLGNHEFNYGLDFLKKALAGAKFPYVNANVIDAK   77 (578)
T ss_pred             CEECCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHC--CCC-EECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             96806753478737888864357678878899998720--988-862145555568999999996489989976422178


Q ss_pred             CCCCCCCEEE------EECCC------EEEEEECCCCCCCCCCC--CCEE-CHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf             4555621279------97198------79998328888887554--7600-89999999999852433697089998376
Q gi|255764495|r  132 STGKKLFPYL------RIRNN------IALIGCSTAIATPPFSA--NGYF-GQEQAHATSKLLRKANKKGFFRIIMMHHP  196 (309)
Q Consensus       132 ~~~~~~~~~~------~~~~~------~~~i~l~s~~~~~~~~~--~g~~-~~~q~~~l~~~L~~~~~~~~~~iv~~Hhp  196 (309)
                      .......+|.      ....+      +.++|+-+.....|...  .|.+ ..+..+..++...+.++++..+|+++-|-
T Consensus        78 ~g~~~f~PY~I~er~v~d~~G~~~~vKVGiiG~~tP~I~~Wd~~~L~G~v~~~D~ve~Akk~Vp~lk~~GaDvVIal~Hs  157 (578)
T PRK09420         78 TGEPLFTPYLIKEKEVKDKDGKEHTLKIGYIGFVPPQIMVWDKANLEGKVTVNDIVETARKYVPEMKEKGADIVVAIPHS  157 (578)
T ss_pred             CCCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCHHHCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             89834476599987886179967535999996478665655643242717973789999999999986499999997166


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEE----EEC------CCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             888764311012797899999987498199998767532478----716------9986899995762357788887785
Q gi|255764495|r  197 PVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHW----IKN------EKKLIPVVGIASASQKVHSNKPQAS  266 (309)
Q Consensus       197 p~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~----~~~------~~~~~~~~~~~s~~~~~~~~~~~~~  266 (309)
                      -+.... .....+|+  ...+-+-.++|++++||.|+..-..    +.+      .-..+|++..+.-+       ..-|
T Consensus       158 G~~~~~-~~~~~EN~--~~~La~v~GIDaIi~GHsH~~fp~~~~~~~~~~d~~kgtingvpvv~Pg~~G-------~~Lg  227 (578)
T PRK09420        158 GISADP-YKEMAENS--VYYLSEVPGIDAIMFGHSHAVFPGKDFADIPGADIAKGTLNGVPAVMPGRWG-------DHLG  227 (578)
T ss_pred             CCCCCC-CCCCCCHH--HHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHH-------CEEE
T ss_conf             657788-88874268--8998658999889808867546775434666653233522674686677443-------8579


Q ss_pred             EEEEEEECCCCEEEEEEEEEE
Q ss_conf             489999538983899999951
Q gi|255764495|r  267 YNLFYIEKKNEYWTLEGKRYT  287 (309)
Q Consensus       267 y~li~i~~~~~~~~v~~~r~~  287 (309)
                      .--++++.+++.|+|.-.+-.
T Consensus       228 ~IdL~L~~~~g~w~V~~~~~~  248 (578)
T PRK09420        228 VVDLVLENDSGKWQVVDAKAE  248 (578)
T ss_pred             EEEEEEEECCCEEEEEECEEE
T ss_conf             999999963986999823415


No 35 
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=98.50  E-value=6.4e-07  Score=64.35  Aligned_cols=90  Identities=21%  Similarity=0.244  Sum_probs=59.5

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC---HHHHHHH
Q ss_conf             7889941114278854100022210001210000012330899999999996269979999374444899---8999999
Q gi|255764495|r   10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTC---NREIFTS   86 (309)
Q Consensus        10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~---~~~~~~~   86 (309)
                      -+.+.+||+|+|.+.....- +-...          ......+.+.+.+.+...+|+.||+.||+-+...   +.|+...
T Consensus        20 ~~~lVvADlHlG~e~~~~r~-Gi~lP----------~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~   88 (235)
T COG1407          20 GRTLVVADLHLGYEESLARR-GINLP----------RYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEV   88 (235)
T ss_pred             CCEEEEEECCCCHHHHHHHC-CCCCC----------CHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHH
T ss_conf             76799971233316988735-76267----------01589999999999986098779990753443675442328999


Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf             9999861899718999458842222
Q gi|255764495|r   87 THWLRSIGNPHDISIVPGNHDAYIS  111 (309)
Q Consensus        87 ~~~~~~l~~~~~v~~v~GNHD~~~~  111 (309)
                      ..+++.+..+ .+.+|.||||.+..
T Consensus        89 ~~f~~~~~~~-evi~i~GNHD~~i~  112 (235)
T COG1407          89 REFLELLDER-EVIIIRGNHDNGIE  112 (235)
T ss_pred             HHHHHHHCCC-CEEEEECCCCCCCC
T ss_conf             9999974138-68999566777640


No 36 
>PHA02239 putative protein phosphatase
Probab=98.50  E-value=5.3e-07  Score=64.89  Aligned_cols=71  Identities=17%  Similarity=0.284  Sum_probs=49.0

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CC-CEEEECCCCCCCCCHHHHHHHH
Q ss_conf             788994111427885410002221000121000001233089999999999626-99-7999937444489989999999
Q gi|255764495|r   10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLH-NV-DHVSITGDIVNFTCNREIFTST   87 (309)
Q Consensus        10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~-~p-D~vvitGDl~~~~~~~~~~~~~   87 (309)
                      -||-.|+|||=+                            .+.|.++++.|... +| |.+|+.||.+++|....  ...
T Consensus         1 m~IYaigDIHG~----------------------------~d~l~~ll~~i~~~~~~~~~lv~lGDyiDRGp~S~--~vi   50 (235)
T PHA02239          1 MAIYVVPDIHGE----------------------------YQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSK--DVV   50 (235)
T ss_pred             CCEEEEEECCCC----------------------------HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHH--HHH
T ss_conf             965898624789----------------------------99999999998743797766999533106895629--999


Q ss_pred             HHHHHH-CCCCCEEEEECCCCCCC
Q ss_conf             999861-89971899945884222
Q gi|255764495|r   88 HWLRSI-GNPHDISIVPGNHDAYI  110 (309)
Q Consensus        88 ~~~~~l-~~~~~v~~v~GNHD~~~  110 (309)
                      +++-.+ .....+.++.||||.+.
T Consensus        51 ~~l~~l~~~~~~~~~L~GNHE~ml   74 (235)
T PHA02239         51 NYIFDLMSNDDNVVTLLGNHDDEF   74 (235)
T ss_pred             HHHHHHHHCCCCEEEEECCHHHHH
T ss_conf             999987536997499107289999


No 37 
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase; InterPro: IPR006294   These sequences represent 2',3'-cyclic-nucleotide 2'-phosphodiesterase; it is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found in the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a scavenging function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 23-cAMP as a sole source of carbon and energy . ; GO: 0008663 2'3'-cyclic-nucleotide 2'-phosphodiesterase activity, 0009117 nucleotide metabolic process.
Probab=98.46  E-value=2e-05  Score=54.51  Aligned_cols=263  Identities=15%  Similarity=0.109  Sum_probs=132.6

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CEEEECCCCCCCCCHHHHHH-HH
Q ss_conf             78899411142788541000222100012100000123308999999999962699-79999374444899899999-99
Q gi|255764495|r   10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNV-DHVSITGDIVNFTCNREIFT-ST   87 (309)
Q Consensus        10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~p-D~vvitGDl~~~~~~~~~~~-~~   87 (309)
                      +||+-.+|+|=-            ..++--+++..........-..|++.++++.- .+++-.|||++..+-.+|.. ++
T Consensus         3 LRI~eTTD~H~n------------~~dyDYYkD~~t~~fGl~~~A~L~~~AR~E~~NsvL~DNGDLIQG~Pl~DY~ara~   70 (634)
T TIGR01390         3 LRIVETTDLHTN------------LLDYDYYKDKATDKFGLTRAATLIKQARAEVKNSVLVDNGDLIQGSPLADYMARAK   70 (634)
T ss_pred             CEEEEHHHHHHH------------HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHCC
T ss_conf             136311124656------------54254224575421125788899999753210427763675214884465676415


Q ss_pred             HH-----------HHHHCCCCCEEEEECCCCCCCCCHHH--HHHHHHHHHHC------CCCCCCCCCCCCEEEEECC---
Q ss_conf             99-----------98618997189994588422220356--76643245431------3444445556212799719---
Q gi|255764495|r   88 HW-----------LRSIGNPHDISIVPGNHDAYISGAKE--KSLHAWKDYIT------SDTTCSTGKKLFPYLRIRN---  145 (309)
Q Consensus        88 ~~-----------~~~l~~~~~v~~v~GNHD~~~~~~~~--~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---  145 (309)
                      -+           ++.|  .+.+ .-.|||+.-....+-  .....-.++..      ............||+....   
T Consensus        71 g~k~G~~~P~~~al~~l--~Y~v-g~lGNHEFNYGL~fL~~~~~~A~~P~v~aN~~~d~~~~~pg~~~FTPY~I~~~~v~  147 (634)
T TIGR01390        71 GLKAGEVHPVYKALNLL--KYDV-GNLGNHEFNYGLEFLKEAIAAAKFPIVNANTVVDAGTGQPGANLFTPYLIKEKSVV  147 (634)
T ss_pred             CCCCCCCCHHHHHHHHC--CCCE-EECCCCHHHHHHHHHHHHHHHCCCCEEECCCEEECCCCCCCCCCCCCEEEECCEEE
T ss_conf             43468745699988641--8632-30167313310689999997278977632524644678876543376456312475


Q ss_pred             ---------CEEEEEECCCCCCCCC--CCCCEECHH-HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf             ---------8799983288888875--547600899-9999999985243369708999837688876431101279789
Q gi|255764495|r  146 ---------NIALIGCSTAIATPPF--SANGYFGQE-QAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQR  213 (309)
Q Consensus       146 ---------~~~~i~l~s~~~~~~~--~~~g~~~~~-q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~  213 (309)
                               .+..||+-+.....|.  .-.|.+... -.+-.++..-+-+.+|..+||++-|--...... ...-+|.  
T Consensus       148 D~~G~~~~l~vG~IG~vpPQI~~WDK~NL~GKv~~~DI~~Ta~K~vPEMk~~GAD~~Va~aHsG~s~d~Y-~~g~ENs--  224 (634)
T TIGR01390       148 DTDGKKHTLKVGYIGLVPPQIMVWDKANLDGKVTTADIVETARKYVPEMKAKGADIVVALAHSGISADPY-QEGAENS--  224 (634)
T ss_pred             ECCCCEEEEEEEEEEEECCCEEEECCCCCCCCEEEHHHHHHHHHCCHHHHHCCCCEEEEECCCCCCCCCC-CCCCCCE--
T ss_conf             0688646888878973287013001112675268632688887315477736895999800688886644-3555300--


Q ss_pred             HHHHHHHCCCEEEEECCCCCCEEEEEE--CCCCCEEEEEECCCCCCCCCCCCCCCEEEEEE--ECC--CCEEEEEEEEEE
Q ss_conf             999998749819999876753247871--69986899995762357788887785489999--538--983899999951
Q gi|255764495|r  214 FQKMIWHEGADLILHGHTHLNSLHWIK--NEKKLIPVVGIASASQKVHSNKPQASYNLFYI--EKK--NEYWTLEGKRYT  287 (309)
Q Consensus       214 l~~~l~~~~v~lvl~GH~H~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i--~~~--~~~~~v~~~r~~  287 (309)
                      +..+-+=.+++.|++||.|.-+-...-  -++-.+.--... +......+.+.....++++  +.+  .+.|.|+--+-.
T Consensus       225 ~~~L~~vpgidav~fGHsH~~FPgk~f~~~pgADI~~GT~~-G~p~vM~G~Wg~~~gVvDL~L~~~r~~g~W~v~~~k~~  303 (634)
T TIGR01390       225 VYYLTKVPGIDAVLFGHSHAVFPGKDFAKIPGADITKGTIN-GVPAVMAGYWGNHLGVVDLQLEEDRKSGKWTVTSAKAE  303 (634)
T ss_pred             EEHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEC-CCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCC
T ss_conf             01000378310898566133478800115887744355124-51011277545740378312011011475378617421


Q ss_pred             CCCC
Q ss_conf             3776
Q gi|255764495|r  288 LSPD  291 (309)
Q Consensus       288 ~~~d  291 (309)
                      ..|.
T Consensus       304 ~RPI  307 (634)
T TIGR01390       304 LRPI  307 (634)
T ss_pred             CCCC
T ss_conf             2640


No 38 
>KOG3947 consensus
Probab=98.30  E-value=2.1e-05  Score=54.35  Aligned_cols=167  Identities=16%  Similarity=0.192  Sum_probs=86.1

Q ss_pred             CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHH------HHHHHCCCCCCCCC---CC
Q ss_conf             7999937444489989999999999861899718999458842222035676643------24543134444455---56
Q gi|255764495|r   66 DHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHA------WKDYITSDTTCSTG---KK  136 (309)
Q Consensus        66 D~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~~  136 (309)
                      |.++.+||.|+.|.++|.....+++..|...++| +|.|||+......+...+..      ..+-..........   ..
T Consensus        84 DvlihagdfT~~g~~~ev~~fn~~~gslph~yKI-VIaGNHELtFd~ef~~~~~k~~~~~~~~p~~s~l~P~a~egv~~l  162 (305)
T KOG3947          84 DVLIHAGDFTNLGLPEEVIKFNEWLGSLPHEYKI-VIAGNHELTFDHEFMADLIKDEQDAYYFPGVSKLKPEAYEGVQSL  162 (305)
T ss_pred             CEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEE-EEEECCCEEECCCCCCHHHCCCCCEECCCCCCCCCCCCCCCCCCH
T ss_conf             6577536876566779997555775057502358-985044001135455022124310000765344686554455320


Q ss_pred             CCEEEE------ECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHC-CCCCCEEEEEEECCCCCCCCCCC---C
Q ss_conf             212799------7198799983288888875547600899999999998524-33697089998376888764311---0
Q gi|255764495|r  137 LFPYLR------IRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKA-NKKGFFRIIMMHHPPVLDTSSLY---N  206 (309)
Q Consensus       137 ~~~~~~------~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~-~~~~~~~iv~~Hhpp~~~~~~~~---~  206 (309)
                      .....+      ...+++|++.+  +.. .....+..    +..-...|... .-.+..-+++.|-||........   .
T Consensus       163 LTN~iYLqD~~vtv~G~~Iygsp--w~p-~~~g~~f~----l~rg~~~ld~W~~ip~~iDvL~tHtPPlG~gd~~~~~~g  235 (305)
T KOG3947         163 LTNCIYLQDSEVTVRGVRIYGSP--WTP-LLPGWAFN----LPRGQSLLDKWNQIPGGIDVLITHTPPLGHGDLVPVFSG  235 (305)
T ss_pred             HCEEEEEECCCEEEEEEEEECCC--CCC-CCCCHHHH----HHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHCCCCCC
T ss_conf             00148983275789888995688--873-34750444----466676667774186523210037898775001010158


Q ss_pred             CCCCHHHHHHHHHH-CCCEEEEECCCCCCEEEEEE
Q ss_conf             12797899999987-49819999876753247871
Q gi|255764495|r  207 RMFGIQRFQKMIWH-EGADLILHGHTHLNSLHWIK  240 (309)
Q Consensus       207 ~~~~~~~l~~~l~~-~~v~lvl~GH~H~~~~~~~~  240 (309)
                      ...+.-+|...+++ -+..+...||+|..+-..-+
T Consensus       236 qr~GC~ell~tVe~rvqpk~hVfGhvhe~~Gvta~  270 (305)
T KOG3947         236 QRNGCVELLNTVERRVQPKYHVFGHVHEGHGVTAD  270 (305)
T ss_pred             CCCCHHHHHHHHHHCCCCCEEEEEEEECCCEEEEC
T ss_conf             31677788776764155334775455047304405


No 39 
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=98.24  E-value=2.9e-05  Score=53.43  Aligned_cols=66  Identities=20%  Similarity=0.226  Sum_probs=46.6

Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             88994111427885410002221000121000001233089999999999626-99799993744448998999999999
Q gi|255764495|r   11 VLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLH-NVDHVSITGDIVNFTCNREIFTSTHW   89 (309)
Q Consensus        11 ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~-~pD~vvitGDl~~~~~~~~~~~~~~~   89 (309)
                      ||..++|||=|                            .+.|+++++.+.-. ..|.+|..||++|+|+...  ...++
T Consensus        16 ~iyvVGDIHGc----------------------------~~~L~~lL~~i~~~p~~D~Lv~lGDlIDRGpdS~--~Vl~l   65 (218)
T PRK09968         16 HIWVVGDIHGC----------------------------YQLLQSRLHQLSFCPETDLLISVGDNIDRGPESL--NVLRL   65 (218)
T ss_pred             EEEEEECCCCC----------------------------HHHHHHHHHHCCCCCCCCEEEEECCEECCCCCCH--HHHHH
T ss_conf             07999647679----------------------------8999999996478845688998066425788829--99999


Q ss_pred             HHHHCCCCCEEEEECCCCCCC
Q ss_conf             986189971899945884222
Q gi|255764495|r   90 LRSIGNPHDISIVPGNHDAYI  110 (309)
Q Consensus        90 ~~~l~~~~~v~~v~GNHD~~~  110 (309)
                      +.   .+ .+++|.||||.+.
T Consensus        66 l~---~~-~~~~v~GNHE~ml   82 (218)
T PRK09968         66 LN---QP-WFISVKGNHEAMA   82 (218)
T ss_pred             HH---CC-CCEEECCHHHHHH
T ss_conf             84---47-9879727479999


No 40 
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=98.19  E-value=5.1e-06  Score=58.42  Aligned_cols=70  Identities=17%  Similarity=0.211  Sum_probs=49.2

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC---------CCCEEEECCCCCCCCCH
Q ss_conf             788994111427885410002221000121000001233089999999999626---------99799993744448998
Q gi|255764495|r   10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLH---------NVDHVSITGDIVNFTCN   80 (309)
Q Consensus        10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~---------~pD~vvitGDl~~~~~~   80 (309)
                      .|.+.|+|+|=|                            .+.|+++++.+.-.         .-|.+++.||++|+|+.
T Consensus         1 m~~~VIGDIHGC----------------------------~~~L~~LL~ki~f~~~~d~~~~p~~d~LvflGDlVdRGP~   52 (245)
T PRK13625          1 MKYDIIGDIHGC----------------------------YQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPH   52 (245)
T ss_pred             CCEEEEEECCCC----------------------------HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf             937899558789----------------------------8999999997086623576568887679994653278957


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             99999999998618997189994588422
Q gi|255764495|r   81 REIFTSTHWLRSIGNPHDISIVPGNHDAY  109 (309)
Q Consensus        81 ~~~~~~~~~~~~l~~~~~v~~v~GNHD~~  109 (309)
                      .  ....+++.+|.....+.+|.||||..
T Consensus        53 S--~~vl~~v~~l~~~~~~~~v~GNHE~~   79 (245)
T PRK13625         53 S--LRMIEIVWELVHKKAAYYVPGNHCNK   79 (245)
T ss_pred             H--HHHHHHHHHHHHCCCEEEEECHHHHH
T ss_conf             0--99999999998659879995807999


No 41 
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=98.09  E-value=9.5e-06  Score=56.64  Aligned_cols=70  Identities=21%  Similarity=0.230  Sum_probs=49.2

Q ss_pred             CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCCCCCHH
Q ss_conf             4325532788994111427885410002221000121000001233089999999999626-997999937444489989
Q gi|255764495|r    3 KRYTTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLH-NVDHVSITGDIVNFTCNR   81 (309)
Q Consensus         3 ~~~~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~-~pD~vvitGDl~~~~~~~   81 (309)
                      .+|.    ||..|+|||=|                            .+.|+++++.+... ..|.+|+.||++|+|+..
T Consensus        14 ~~~r----~iyvIGDIHGc----------------------------~d~L~~lL~~i~~~~~~D~LI~lGDlIDRGPdS   61 (218)
T PRK11439         14 KQWR----HIWLVGDIHGC----------------------------FEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQS   61 (218)
T ss_pred             CCCC----EEEEEECCCCC----------------------------HHHHHHHHHHCCCCCCCCEEEECCCEECCCCCH
T ss_conf             7874----69999646589----------------------------999999999638995467899858601789787


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             99999999986189971899945884222
Q gi|255764495|r   82 EIFTSTHWLRSIGNPHDISIVPGNHDAYI  110 (309)
Q Consensus        82 ~~~~~~~~~~~l~~~~~v~~v~GNHD~~~  110 (309)
                      .  ...+++.+    ..+++|.||||.+.
T Consensus        62 ~--~vl~ll~~----~~~~~v~GNHE~ml   84 (218)
T PRK11439         62 L--RCLQLLRE----HWVRAVRGNHEQMA   84 (218)
T ss_pred             H--HHHHHHHH----CCCEEEECCHHHHH
T ss_conf             9--99999982----89849761479999


No 42 
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=98.04  E-value=1.3e-05  Score=55.72  Aligned_cols=68  Identities=28%  Similarity=0.422  Sum_probs=48.5

Q ss_pred             EEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCCCCCHHHHHHHH
Q ss_conf             2788994111427885410002221000121000001233089999999999626-997999937444489989999999
Q gi|255764495|r    9 MFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLH-NVDHVSITGDIVNFTCNREIFTST   87 (309)
Q Consensus         9 m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~-~pD~vvitGDl~~~~~~~~~~~~~   87 (309)
                      |-+++ |+|+|=|                            .+.|+.+++.+.-. +-|.+++.||++++|+..  ....
T Consensus         1 m~tyv-IGDIHGc----------------------------~~el~~LL~ki~~~~~~D~lvflGDlVdRGP~S--~~vl   49 (275)
T PRK00166          1 MATYA-IGDIQGC----------------------------YDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDS--LETL   49 (275)
T ss_pred             CCCEE-EEECCCC----------------------------HHHHHHHHHHCCCCCCCCEEEEECCEECCCCCH--HHHH
T ss_conf             98448-8775469----------------------------999999999628997788899956356899882--9999


Q ss_pred             HHHHHHCCCCCEEEEECCCCCC
Q ss_conf             9998618997189994588422
Q gi|255764495|r   88 HWLRSIGNPHDISIVPGNHDAY  109 (309)
Q Consensus        88 ~~~~~l~~~~~v~~v~GNHD~~  109 (309)
                      +++.++..  .+.+|.||||..
T Consensus        50 ~~v~~l~~--~~~~VlGNHE~~   69 (275)
T PRK00166         50 RFVKSLGD--SAVVVLGNHDLH   69 (275)
T ss_pred             HHHHHHCC--CCEEECCCHHHH
T ss_conf             99997126--707985643788


No 43 
>TIGR00024 SbcD_rel_arch phosphoesterase, putative; InterPro: IPR004376   Members of this uncharacterised family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of  Escherichia coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal..
Probab=98.03  E-value=1e-05  Score=56.41  Aligned_cols=86  Identities=21%  Similarity=0.340  Sum_probs=56.5

Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCH----HHHHHHHHHHHHCCCCEEEECCCCCCCC---CHHHH
Q ss_conf             8899411142788541000222100012100000123308----9999999999626997999937444489---98999
Q gi|255764495|r   11 VLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSK----EVANLLINDILLHNVDHVSITGDIVNFT---CNREI   83 (309)
Q Consensus        11 ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~i~~~~pD~vvitGDl~~~~---~~~~~   83 (309)
                      +-+-|+|+|||-.               ++...+....+.    .+.+++..-+..-+...++++|||=+..   -|-++
T Consensus        16 ~~avIAD~HLGf~---------------~~~~~~G~~vP~~Q~~eii~r~~~I~e~yg~~~livaGDLKH~F~~~~P~~~   80 (243)
T TIGR00024        16 DKAVIADLHLGFE---------------RYLDERGVAVPRLQVEEIIERVLSIVEKYGIEKLIVAGDLKHEFKKGLPLEW   80 (243)
T ss_pred             CCEEEEEHHHCHH---------------HHHCCCCEECCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCH
T ss_conf             7058863000420---------------0005786143524389999998866655250515661011105889888228


Q ss_pred             HHHH------HHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf             9999------999861899718999458842222
Q gi|255764495|r   84 FTST------HWLRSIGNPHDISIVPGNHDAYIS  111 (309)
Q Consensus        84 ~~~~------~~~~~l~~~~~v~~v~GNHD~~~~  111 (309)
                      +..+      ++++.+..-..+..|.||||.+..
T Consensus        81 ~~~reiirmmef~E~~~~yid~~~irGNHD~~i~  114 (243)
T TIGR00024        81 KFVREIIRMMEFIEVVREYIDLILIRGNHDAYIA  114 (243)
T ss_pred             HHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHH
T ss_conf             9999999998886410147899998067057899


No 44 
>TIGR01530 nadN NAD nucleotidase; InterPro: IPR006420    This family describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5-nucleotidases and has NMN 5-nucleotidase activity for NMN, AMP, etc.; GO: 0008253 5'-nucleotidase activity.
Probab=97.84  E-value=0.0019  Score=41.51  Aligned_cols=190  Identities=18%  Similarity=0.225  Sum_probs=91.3

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCC--------CCCH
Q ss_conf             788994111427885410002221000121000001233089999999999626-9979999374444--------8998
Q gi|255764495|r   10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLH-NVDHVSITGDIVN--------FTCN   80 (309)
Q Consensus        10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~-~pD~vvitGDl~~--------~~~~   80 (309)
                      ++|+||.|=|==-+|..-++.       ++-++-|...-...++..-++.++++ +=-+|+++||-.-        .|+.
T Consensus         1 L~I~HINDHHS~LEP~~~~~~-------~~G~~~~~~~GGy~A~~~~~~~LR~~~KN~LVLHAGDA~~GTLY~TLF~G~A   73 (550)
T TIGR01530         1 LSILHINDHHSYLEPEELRLA-------LAGERLKVDVGGYAALVAKLNKLRKKYKNALVLHAGDALIGTLYFTLFRGRA   73 (550)
T ss_pred             CEEEEEECCCCCCCCCCEEEE-------ECCCEEEEEECHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCH
T ss_conf             937887075576788530542-------0564355420306788999999888607863761103578888876317742


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHC---------CCCCCC--CCCCCCEEE-EECCCEE
Q ss_conf             9999999999861899718999458842222035676643245431---------344444--555621279-9719879
Q gi|255764495|r   81 REIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYIT---------SDTTCS--TGKKLFPYL-RIRNNIA  148 (309)
Q Consensus        81 ~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~~~~~-~~~~~~~  148 (309)
                      .     ...+..-  ... |+..|||+....+..   +..+..++.         .+....  ....++..+ +....+.
T Consensus        74 D-----A~~MN~~--~F~-yFTLGNHEFD~GNEG---L~~lL~~L~~PVLSANV~P~~~S~L~~~WKP~~I~~~~GE~I~  142 (550)
T TIGR01530        74 D-----AVLMNAA--NFD-YFTLGNHEFDAGNEG---LKKLLEYLKVPVLSANVVPDKASILYNKWKPYDIVEVDGEKIA  142 (550)
T ss_pred             H-----HHHHCCC--CCC-EEECCCCCCCCCCHH---HHHHHHHHCCCEEEECCCCCCCCHHHCCCCCCCEEEECCCEEE
T ss_conf             1-----2200047--965-032476233554558---9986444157635532577720011025785100353785899


Q ss_pred             EEEECCCCCCC----CCCCCCEECH-HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH-CC
Q ss_conf             99832888888----7554760089-999999999852433697089998376888764311012797899999987-49
Q gi|255764495|r  149 LIGCSTAIATP----PFSANGYFGQ-EQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWH-EG  222 (309)
Q Consensus       149 ~i~l~s~~~~~----~~~~~g~~~~-~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~-~~  222 (309)
                      +|||||...+.    |...-..+++ +..+.....|+   ..|-..|+++-|.-+..++             ++.++ .+
T Consensus       143 ~IGLDTV~KTV~SSSPGKD~~F~DEI~~~~~~~~~l~---QQG~NKIILLSHAG~EKN~-------------EIAQ~~~~  206 (550)
T TIGR01530       143 VIGLDTVKKTVESSSPGKDVKFIDEIEAVRIAAVELK---QQGVNKIILLSHAGFEKNI-------------EIAQKVSD  206 (550)
T ss_pred             EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---HCCCCEEEEEECCCCCCCC-------------HHHCCCCC
T ss_conf             9830343210235877886515657899999999876---3784346653117862240-------------20014266


Q ss_pred             CEEEEECCCCC
Q ss_conf             81999987675
Q gi|255764495|r  223 ADLILHGHTHL  233 (309)
Q Consensus       223 v~lvl~GH~H~  233 (309)
                      +|++.+|-+|-
T Consensus       207 IDVIV~GD~HY  217 (550)
T TIGR01530       207 IDVIVSGDSHY  217 (550)
T ss_pred             EEEEEECCEEE
T ss_conf             00798577024


No 45 
>pfam04042 DNA_pol_E_B DNA polymerase alpha/epsilon subunit B. This family contains a number of DNA polymerase subunits. The B subunit of the DNA polymerase alpha plays an essential role at the initial stage of DNA replication in S. cerevisiae and is phosphorylated in a cell cycle-dependent manner. DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication 
Probab=97.58  E-value=0.0016  Score=42.02  Aligned_cols=76  Identities=17%  Similarity=0.165  Sum_probs=53.9

Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCH-----------
Q ss_conf             899411142788541000222100012100000123308999999999962699799993744448998-----------
Q gi|255764495|r   12 LAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCN-----------   80 (309)
Q Consensus        12 i~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~-----------   80 (309)
                      |+.+||+++...                       ....+.|+.+++...+.+||.+|++|..++....           
T Consensus         1 iv~~Sg~~~~~d-----------------------~~~~~~L~~ll~~~~~~~p~~lIL~GpF~~~~~~~~~~~~~~~~~   57 (205)
T pfam04042         1 IVFVSGLYLDGD-----------------------NKSLELLRDLLSGYNAAPPDRLVLAGPFLSAPHNLIASSAVNSTY   57 (205)
T ss_pred             CEEEECCCCCCC-----------------------CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             989926886888-----------------------664799999998761579958999788878876544356434572


Q ss_pred             --HHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             --999999999986189971899945884222
Q gi|255764495|r   81 --REIFTSTHWLRSIGNPHDISIVPGNHDAYI  110 (309)
Q Consensus        81 --~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~  110 (309)
                        ........++.++...+++.+|||+||...
T Consensus        58 ~~~~~~~l~~~~~~i~~~~~vilvPg~~D~~~   89 (205)
T pfam04042        58 DFVFLKLLDGILEQLLSSTPVILVPGPNDPTN   89 (205)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf             17799999999876402685999489876656


No 46 
>KOG4419 consensus
Probab=97.48  E-value=0.0024  Score=40.79  Aligned_cols=205  Identities=16%  Similarity=0.177  Sum_probs=88.0

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHH-HHHHHHHHHCCCCEEEE-CCCCCCCCC-----HHH
Q ss_conf             78899411142788541000222100012100000123308999-99999996269979999-374444899-----899
Q gi|255764495|r   10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVA-NLLINDILLHNVDHVSI-TGDIVNFTC-----NRE   82 (309)
Q Consensus        10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~i~~~~pD~vvi-tGDl~~~~~-----~~~   82 (309)
                      .++.|.||+|=.-..-.++.            .+..+.-..+.+ ..+.+.+....+|.+++ +||+-+.--     ...
T Consensus        43 ~nf~hTtdthG~~~~h~~~~------------~~~~~~G~f~~f~~~~k~~a~~~~~dvl~~dtGD~hdGtg~sd~~~~~  110 (602)
T KOG4419          43 PNFIHTTDTHGWLGSHLRDA------------RYDADFGDFAAFALRMKELADRKGVDVLLVDTGDLHDGTGLSDATDPP  110 (602)
T ss_pred             CCCEEECCCCCCCCCCCCCH------------HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCCCC
T ss_conf             56223124544422346301------------133201307999999999874169987997354446884312204782


Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCCCCCCHH----HHHHHHHHHHHCCCCC---------CCCCCCCCEEEEECCCEE-
Q ss_conf             99999999861899718999458842222035----6766432454313444---------445556212799719879-
Q gi|255764495|r   83 IFTSTHWLRSIGNPHDISIVPGNHDAYISGAK----EKSLHAWKDYITSDTT---------CSTGKKLFPYLRIRNNIA-  148 (309)
Q Consensus        83 ~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~----~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-  148 (309)
                      -.....++...  ++. ....|||+.+.....    ..+...|...+....-         ...+...+ ++....++. 
T Consensus       111 g~~t~~l~~~~--~yD-~l~lGNHEl~~~~ve~l~~~~f~~~~k~~~la~Nv~~~~~~~~~~p~~~~~~-t~~t~~~~~v  186 (602)
T KOG4419         111 GIYTNFLFKMM--PYD-ILTLGNHELYQANVENLTEEYFLPAWKGPYLASNVQIFDSSNSFVPFGLEYA-TFLTPHGVVV  186 (602)
T ss_pred             HHHHHHHHHCC--CCC-HHHHCCHHHHHHHHHCCCHHHHHHHHCCCEEECCEEEECCCHHHCCCCCCCE-EEECCCCEEE
T ss_conf             57788887428--522-2220421444434202333555654046466111487458111052566635-8842675389


Q ss_pred             -EEEECCCCCCCCCCCCCEECH---HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHC-CC
Q ss_conf             -998328888887554760089---9999999998524336970899983768887643110127978999999874-98
Q gi|255764495|r  149 -LIGCSTAIATPPFSANGYFGQ---EQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHE-GA  223 (309)
Q Consensus       149 -~i~l~s~~~~~~~~~~g~~~~---~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~-~v  223 (309)
                       .+|.-++.....-...-....   .|.+|-..+++.   .+...|++.-|-|+.....+..      ...++...+ ++
T Consensus       187 ~~vG~~~~~f~~~~n~~~v~~veei~~~~~~~~m~~~---~~idlii~lgH~~~~~~~e~~~------~~~~ir~~~p~t  257 (602)
T KOG4419         187 LAVGFLCASFSGAANRTVVVPVEEITQSEWEQDMVNT---TDIDLIIALGHSPVRDDDEWKS------LHAEIRKVHPNT  257 (602)
T ss_pred             EEEEEEECCCCCCCCCCCCCCHHHHHCCCHHHHHHHC---CCCCEEEEECCCCCCCCHHHHH------HHHHHHHHCCCC
T ss_conf             9887862235566787633518987524268888515---6864899965566554066666------788876207998


Q ss_pred             EE-EEECCCCCCEEEEE
Q ss_conf             19-99987675324787
Q gi|255764495|r  224 DL-ILHGHTHLNSLHWI  239 (309)
Q Consensus       224 ~l-vl~GH~H~~~~~~~  239 (309)
                      ++ ++-||.|.......
T Consensus       258 ~IqviGGHshird~a~~  274 (602)
T KOG4419         258 PIQVIGGHSHIRDFAVY  274 (602)
T ss_pred             CEEEECCHHHHHHHHHC
T ss_conf             50898761054553203


No 47 
>KOG2863 consensus
Probab=97.44  E-value=0.0031  Score=40.12  Aligned_cols=176  Identities=14%  Similarity=0.126  Sum_probs=92.1

Q ss_pred             HHHHHHC---CCCEEEECCCCCCC---------CCHHHHHHHHHHHH----HHCCCCCEEEEECCCCCCCCCHHHHHHHH
Q ss_conf             9999626---99799993744448---------99899999999998----61899718999458842222035676643
Q gi|255764495|r   57 INDILLH---NVDHVSITGDIVNF---------TCNREIFTSTHWLR----SIGNPHDISIVPGNHDAYISGAKEKSLHA  120 (309)
Q Consensus        57 ~~~i~~~---~pD~vvitGDl~~~---------~~~~~~~~~~~~~~----~l~~~~~v~~v~GNHD~~~~~~~~~~~~~  120 (309)
                      +..+.+.   +.|++++.||+--.         +-|..|+....|.+    ++.+|++-.+|-|||+......    ...
T Consensus        20 i~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIFIGGNHEAsnyL~----eLp   95 (456)
T KOG2863          20 ISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIFIGGNHEASNYLQ----ELP   95 (456)
T ss_pred             HHHHHHCCCCCCCEEEECCCHHHHCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHH----HCC
T ss_conf             9999870798730899716267642522122345887888887799881786037502799448657777887----565


Q ss_pred             HHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCC----------CCCCCCCEEC----HHHHHHHHHHHHHCCCCC
Q ss_conf             24543134444455562127997198799983288888----------8755476008----999999999985243369
Q gi|255764495|r  121 WKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIAT----------PPFSANGYFG----QEQAHATSKLLRKANKKG  186 (309)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~----------~~~~~~g~~~----~~q~~~l~~~L~~~~~~~  186 (309)
                      ++.|    .....-...+..+...++++|-|+..-+..          +|+... .+.    -.+.+  -..|.+.+  +
T Consensus        96 yGGw----VApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh~E~ppyn~s-tiRsiYHvR~~d--V~~Lkqlk--~  166 (456)
T KOG2863          96 YGGW----VAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGHFEWPPYNNS-TIRSIYHVRISD--VAKLKQLK--H  166 (456)
T ss_pred             CCCE----ECCCEEEEEECCEEEECCEEEEECCCHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHHHH--HHHHHHHC--C
T ss_conf             6764----1352577520326878988882011010110002478789996411-223321123666--68887635--7


Q ss_pred             CEEEEEEECCCCCCCCC----------------CCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEE-CCCCC
Q ss_conf             70899983768887643----------------1101279789999998749819999876753247871-69986
Q gi|255764495|r  187 FFRIIMMHHPPVLDTSS----------------LYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIK-NEKKL  245 (309)
Q Consensus       187 ~~~iv~~Hhpp~~~~~~----------------~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~-~~~~~  245 (309)
                      ..-|.+.|-=|......                ...+..++..+.++|..-...++|+-|.|.-+...++ +....
T Consensus       167 piDIfLSHDWP~GI~~yGd~~~LLr~KPFFrqeie~~~LGSp~~~eLL~~LkP~yWfsAHLH~KFaA~v~H~~~~~  242 (456)
T KOG2863         167 PIDIFLSHDWPRGIYYYGDKKQLLRLKPFFRQEIEEGKLGSPALEELLEDLKPQYWFSAHLHVKFAALVQHNKRSH  242 (456)
T ss_pred             CCEEEEECCCCCCHHHCCCHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             6237861678841410487998874380788887517768867999999707205246667667765420467677


No 48 
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=97.43  E-value=0.0058  Score=38.33  Aligned_cols=183  Identities=13%  Similarity=0.073  Sum_probs=95.3

Q ss_pred             HHHHHHHCCCCEEEECCCCCC-CC-CH------------------------HHHHH------HHHHHHHHCCCCCEEEEE
Q ss_conf             999996269979999374444-89-98------------------------99999------999998618997189994
Q gi|255764495|r   56 LINDILLHNVDHVSITGDIVN-FT-CN------------------------REIFT------STHWLRSIGNPHDISIVP  103 (309)
Q Consensus        56 ~~~~i~~~~pD~vvitGDl~~-~~-~~------------------------~~~~~------~~~~~~~l~~~~~v~~v~  103 (309)
                      +-+.+.++.||+||+.||-+. .| .+                        ++|+.      ...-++...+.+|.++.-
T Consensus       160 aY~~ma~~~~D~viH~GDyIYeyg~~~~~~~~~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~W  239 (522)
T COG3540         160 AYKTMAKEEPDFVIHLGDYIYEYGPIPDEVSLNSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQW  239 (522)
T ss_pred             HHHHHHHCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHCCCCEEEEE
T ss_conf             99998735997799707755325886420124566665557788761366899765776641658789763039878885


Q ss_pred             CCCCCCCCC--------------HH----HHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC-EEEEEECCCCCC------
Q ss_conf             588422220--------------35----67664324543134444455562127997198-799983288888------
Q gi|255764495|r  104 GNHDAYISG--------------AK----EKSLHAWKDYITSDTTCSTGKKLFPYLRIRNN-IALIGCSTAIAT------  158 (309)
Q Consensus       104 GNHD~~~~~--------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~s~~~~------  158 (309)
                      --|++....              .+    .+....|.+++.-...........+.....|+ ..+..||+-.+.      
T Consensus       240 DDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A~qAyyE~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~  319 (522)
T COG3540         240 DDHEVANNWSNSIDENDSRYDEKDFVLRAAAARQAYYEHMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCG  319 (522)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEEEEHHHHCCCCCCC
T ss_conf             34211145444554357777827799999999999987484304368865002564235640020132103212356667


Q ss_pred             CC---------CCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--------------CCCCCCCCCCCCHHHHH
Q ss_conf             87---------55476008999999999985243369708999837688--------------87643110127978999
Q gi|255764495|r  159 PP---------FSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPV--------------LDTSSLYNRMFGIQRFQ  215 (309)
Q Consensus       159 ~~---------~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~--------------~~~~~~~~~~~~~~~l~  215 (309)
                      .+         ......++..|.+||++.|...+.  ++.|+..--|..              ...+.|..--.++++|.
T Consensus       320 dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~Ska--tWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl  397 (522)
T COG3540         320 DGNPPNCQAVAGSAATMLGEQQEQWLKRGLGASKA--TWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLL  397 (522)
T ss_pred             CCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCH--HHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             99862344552734220106799999735430401--1665452062467633787544686555667677762689999


Q ss_pred             HHHHHCCCE--EEEECCCCCCEEEEEE
Q ss_conf             999874981--9999876753247871
Q gi|255764495|r  216 KMIWHEGAD--LILHGHTHLNSLHWIK  240 (309)
Q Consensus       216 ~~l~~~~v~--lvl~GH~H~~~~~~~~  240 (309)
                      ..++..++.  ++|.|.+|......++
T Consensus       398 ~fi~~~~~~N~V~LtgDvH~~wA~~l~  424 (522)
T COG3540         398 RFIADRKIRNTVVLTGDVHYSWAHDLD  424 (522)
T ss_pred             HHHHHCCCCCCEEEECHHHHHHHHHCC
T ss_conf             999862888847994436787775348


No 49 
>cd00144 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, including PP1, PP2A and PP2B (calcineurin) family members.
Probab=97.19  E-value=0.02  Score=34.85  Aligned_cols=198  Identities=11%  Similarity=0.076  Sum_probs=82.2

Q ss_pred             CCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCC-----CCCCCCCCCCE
Q ss_conf             9799993744448998999999999986189971899945884222203567664324543134-----44445556212
Q gi|255764495|r   65 VDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSD-----TTCSTGKKLFP  139 (309)
Q Consensus        65 pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  139 (309)
                      ..-.|+.||.+|+|.-.-.....-+.-.+..|..|+.+.|||+.........+.......+...     ....+.  ..|
T Consensus        55 ~~~ylFLGDYVDRG~~slEvi~lL~~lKi~~P~~v~LLRGNHE~~~~n~~ygF~~E~~~ky~~~~v~~~~~~~F~--~LP  132 (269)
T cd00144          55 DDNYLFLGDYVDRGPQSIEVILLLFALKILYPNNFFLLRGNHESPSINKIYGFYDECKRKYGEKRIWKIFNDVFS--WLP  132 (269)
T ss_pred             CCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCC
T ss_conf             553883465306778774999999999985988489607776262012334778886552594899999999985--370


Q ss_pred             EEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC-----CCCCCCCCCCCHHHH
Q ss_conf             799719879998328888887554760089999999999852433697089998376888-----764311012797899
Q gi|255764495|r  140 YLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVL-----DTSSLYNRMFGIQRF  214 (309)
Q Consensus       140 ~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~-----~~~~~~~~~~~~~~l  214 (309)
                      ..-..++ .++++-....  +..    -.-+++....+...+....+...-+++--|-..     ++.....-..+.+.+
T Consensus       133 laaiI~~-~ifcvHGGi~--~~~----~~~~~i~~~~~~~~~~~~~~~~~dlLWsDP~~~~~~~~~s~RG~g~~fG~~~~  205 (269)
T cd00144         133 LAALIGQ-RILCMHGGLS--PDL----SSLDDIRKNLDRPKEPPDDGLACDLLWSDPDDDVPGWGPSTRGASYYFGEDVV  205 (269)
T ss_pred             HHEEECC-EEEEECCCCC--CCC----CCHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCHHHH
T ss_conf             5337768-0899579888--666----62888986207888998767453335337776668873599986235798999


Q ss_pred             HHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             99998749819999876753247871699868999957623577888877854899995389
Q gi|255764495|r  215 QKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKN  276 (309)
Q Consensus       215 ~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~  276 (309)
                      .+.+++.+.++++-||.=...-..+. .++.  ++.+-|++..-..  .++.=.++.|+++.
T Consensus       206 ~~Fl~~n~l~~IIR~He~~~~G~~~~-~~~~--~iTvFSa~nY~~~--~~N~ga~l~i~~~~  262 (269)
T cd00144         206 DEFLERNNLDLIIRAHEVVDDGYEFF-ADGK--LITVFSAPNYCGQ--FGNAAAVLKVDGNL  262 (269)
T ss_pred             HHHHHHCCCEEEEEECCCCCCCEEEE-CCCC--EEEEECCCCCCCC--CCCCEEEEEECCCC
T ss_conf             99999889848998140343630894-5996--9998008743688--88757999999996


No 50 
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=96.82  E-value=0.002  Score=41.30  Aligned_cols=165  Identities=13%  Similarity=-0.029  Sum_probs=90.2

Q ss_pred             CCEEEECCCCCCCCCHH-----HHHHHHHHHHHHC-------CCCCEEEEECCCCCCCCCHH---HHHHHHHHHHHC---
Q ss_conf             97999937444489989-----9999999998618-------99718999458842222035---676643245431---
Q gi|255764495|r   65 VDHVSITGDIVNFTCNR-----EIFTSTHWLRSIG-------NPHDISIVPGNHDAYISGAK---EKSLHAWKDYIT---  126 (309)
Q Consensus        65 pD~vvitGDl~~~~~~~-----~~~~~~~~~~~l~-------~~~~v~~v~GNHD~~~~~~~---~~~~~~~~~~~~---  126 (309)
                      |=.+|.-||+++.+.+.     |-..++++-.+..       .-+|||+-.||||.-.....   .-+-+...++..   
T Consensus       127 plGlV~ggDitddgggq~~qprEg~ql~qf~~RYsq~vG~~h~H~PvYvGlgnhdldq~gpph~~DWyRrElrdyve~~H  206 (392)
T COG5555         127 PLGLVEGGDITDDGGGQSFQPREGNQLKQFELRYSQDVGNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRRELRDYVENYH  206 (392)
T ss_pred             CEEEEEECCEECCCCCCCCCCCCCCHHHCHHHHHCCCCCCCEEEEEEEECCCCHHHCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             32678611132168873457655531214576631277873465535763572122025999740689988789998603


Q ss_pred             --------CCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf             --------344444555621279971987999832888888755476008999999999985243369708999837688
Q gi|255764495|r  127 --------SDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPV  198 (309)
Q Consensus       127 --------~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~  198 (309)
                              .............|....++++++-+........     ......+-|++..|......+.+++++.|+.=.
T Consensus       207 r~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf~Gd~~-----~ga~sslpwlk~dl~~~aadgrpv~LfqhyGwd  281 (392)
T COG5555         207 RSDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRFIGDAE-----PGANSSLPWLKVDLIYSAADGRPVYLFQHYGWD  281 (392)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHEECCCCCEEEEEEEEECCCCC-----CCCCCCCCCEECCCEEECCCCCCEEEHHHHCCC
T ss_conf             767666899885433201011001343135788764215667-----776556731211202112579836631220710


Q ss_pred             CCCC-CC--C--------------CCCCCHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             8764-31--1--------------01279789999998749819999876753
Q gi|255764495|r  199 LDTS-SL--Y--------------NRMFGIQRFQKMIWHEGADLILHGHTHLN  234 (309)
Q Consensus       199 ~~~~-~~--~--------------~~~~~~~~l~~~l~~~~v~lvl~GH~H~~  234 (309)
                      ...+ .|  .              ..-.+...+...++.|++..+++||.|.-
T Consensus       282 tfsteawdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYNvvg~fhGhkhd~  334 (392)
T COG5555         282 TFSTEAWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYNVVGTFHGHKHDF  334 (392)
T ss_pred             CEECCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCC
T ss_conf             01021368300133668998998788987105888643750677515633564


No 51 
>KOG3325 consensus
Probab=96.82  E-value=0.035  Score=33.16  Aligned_cols=97  Identities=21%  Similarity=0.191  Sum_probs=55.8

Q ss_pred             CCEEEEEEECC-CCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCC---CC
Q ss_conf             97089998376-888764311012797899999987498199998767532478716998689999576235778---88
Q gi|255764495|r  186 GFFRIIMMHHP-PVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVH---SN  261 (309)
Q Consensus       186 ~~~~iv~~Hhp-p~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~---~~  261 (309)
                      +.++|-++|.. .++..        +.+.+.-+-++..||+++.||+|.-.....+|    -.+++-+|++..+.   .+
T Consensus        78 GqfkIG~chGhqViP~g--------d~~sL~~LaRqldvDILl~G~Th~f~Aye~eg----~ffvnPGSaTGAfn~~~t~  145 (183)
T KOG3325          78 GQFKIGLCHGHQVIPWG--------DPESLALLARQLDVDILLTGHTHKFEAYEHEG----KFFVNPGSATGAFNVSDTD  145 (183)
T ss_pred             CCEEEEEECCCEEECCC--------CHHHHHHHHHHCCCCEEEECCCEEEEEEEECC----CEEECCCCCCCCCCCCCCC
T ss_conf             41788765475762389--------98999999975497599967813589998478----0996787555777632357


Q ss_pred             CCCCCEEEEEEECCCCEEEEEEEEEECCCCCEEEEEC
Q ss_conf             8778548999953898389999995137761157531
Q gi|255764495|r  262 KPQASYNLFYIEKKNEYWTLEGKRYTLSPDSLSIQKD  298 (309)
Q Consensus       262 ~~~~~y~li~i~~~~~~~~v~~~r~~~~~d~~~~~~~  298 (309)
                      ...+||-|.+|...    .+.++-|.+..+.--+++-
T Consensus       146 ~~~PSFvLmDiqg~----~~v~YvY~lidgeVkVdki  178 (183)
T KOG3325         146 IIVPSFVLMDIQGS----TVVTYVYRLIDGEVKVDKI  178 (183)
T ss_pred             CCCCCEEEEEECCC----EEEEEEEEEECCCEEEEEE
T ss_conf             77774699971287----7999980404882788999


No 52 
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.40  E-value=0.077  Score=30.93  Aligned_cols=197  Identities=12%  Similarity=0.125  Sum_probs=81.1

Q ss_pred             CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHH----HHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf             79999374444899899999999998618997189994588422220356766----43245431344444555621279
Q gi|255764495|r   66 DHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSL----HAWKDYITSDTTCSTGKKLFPYL  141 (309)
Q Consensus        66 D~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  141 (309)
                      +-.|+.||.+|+|...--....-+.-++.-|..|+.+.|||+.........+.    ..+...........+.  ..|..
T Consensus        56 ~~ylFLGDYVDRG~~s~Evi~lL~~lKi~~P~~v~lLRGNHE~~~~~~~ygF~~E~~~kyg~~i~~~~~~~F~--~LPla  133 (271)
T smart00156       56 TNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYGEEIYEKFQEAFS--WLPLA  133 (271)
T ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHCCCCCHHHHHHHHCCHHHHHHHHHHHH--HCCHH
T ss_conf             6289504420568774289999999998699859971688656655467783788875538999999999984--27152


Q ss_pred             EECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC-----CCCCCCCCCCCHHHHHH
Q ss_conf             9719879998328888887554760089999999999852433697089998376888-----76431101279789999
Q gi|255764495|r  142 RIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVL-----DTSSLYNRMFGIQRFQK  216 (309)
Q Consensus       142 ~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~-----~~~~~~~~~~~~~~l~~  216 (309)
                      -..++ .++++......      ..-.-+++..+.+-.... ..+...-+++--|-..     .......-.-+.+.+.+
T Consensus       134 aiI~~-~i~cvHGGi~~------~~~~l~~i~~i~r~~~~~-~~~~~~dllWsDP~~~~~~~~~s~Rg~g~~fg~~~~~~  205 (271)
T smart00156      134 ALIDN-KILCMHGGLSP------DLTTLDDIRKLKRPQEPP-DEGLLIDLLWSDPDQPVDGFQPSIRGASYYFGPDAVDE  205 (271)
T ss_pred             EEECC-EEEEECCCCCC------CCCCHHHHHHCCCCCCCC-CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             37747-18995687786------678799997388988899-85313314532877667984569999761279899999


Q ss_pred             HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf             9987498199998767532478716998689999576235778888778548999953898
Q gi|255764495|r  217 MIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKNE  277 (309)
Q Consensus       217 ~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~~  277 (309)
                      .+++.+.++++-||.=.+.-..+. .++.+  +..-|++..  -+..++.-.++.|+++..
T Consensus       206 Fl~~n~l~~IIR~He~~~~G~~~~-~~~~~--iTvFSa~nY--~~~~~N~gavl~i~~~~~  261 (271)
T smart00156      206 FLKKNNLKLIIRAHQVVDDGYEFF-HDRKL--VTIFSAPNY--CGRFGNKAAVLKVDKDLK  261 (271)
T ss_pred             HHHHCCCEEEEECCCCCCCCEEEE-CCCCE--EEEECCCCC--CCCCCCCEEEEEECCCCC
T ss_conf             999889858986263565710893-59968--999408862--678886579999989996


No 53 
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=96.03  E-value=0.12  Score=29.68  Aligned_cols=196  Identities=13%  Similarity=0.114  Sum_probs=84.2

Q ss_pred             CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCC----CCCCCCCCCCCEEE
Q ss_conf             79999374444899899999999998618997189994588422220356766432454313----44444555621279
Q gi|255764495|r   66 DHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITS----DTTCSTGKKLFPYL  141 (309)
Q Consensus        66 D~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  141 (309)
                      .--++.||.+|+|.-.--..+.-+.-++.-|..|+.+.|||+.........+.......+..    .....+.  ..|..
T Consensus        80 ~~YlFLGDYVDRG~~SlEvi~lL~alKi~yP~~v~LLRGNHE~~~~n~~yGF~~E~~~ky~~~i~~~f~~~F~--~LPla  157 (294)
T PTZ00244         80 SNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYNIKLFKAFTDVFN--TMPVC  157 (294)
T ss_pred             CCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHH--HCHHH
T ss_conf             5688215535777653099999999986488808962787647355677886899998817899999999985--36176


Q ss_pred             EECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC-----CCCCCCCCCCCHHHHHH
Q ss_conf             9719879998328888887554760089999999999852433697089998376888-----76431101279789999
Q gi|255764495|r  142 RIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVL-----DTSSLYNRMFGIQRFQK  216 (309)
Q Consensus       142 ~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~-----~~~~~~~~~~~~~~l~~  216 (309)
                      -..++ .++++....  .|.    ...-+++..+++-.. .+..+...-+++--|-..     .+......+-+.+.+.+
T Consensus       158 AiI~~-kifcvHGGi--sp~----l~~l~~I~~i~Rp~~-~~~~~~~~dlLWSDP~~~~~g~~~s~RG~g~~FG~~~~~~  229 (294)
T PTZ00244        158 CVISE-KIICMHGGL--SPD----LTSLASVNEIERPCD-VPDRGILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVND  229 (294)
T ss_pred             HHHCC-CCEECCCCC--CCC----CCCHHHHHHCCCCCC-CCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCHHHHHH
T ss_conf             85167-631116887--877----777999964758877-8988845001643885546896668998534578899999


Q ss_pred             HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             998749819999876753247871699868999957623577888877854899995389
Q gi|255764495|r  217 MIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKN  276 (309)
Q Consensus       217 ~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~  276 (309)
                      .+++.+.++++-||.-...-.... .++.  ++.+-|++..-.  ..++.=+++.|+++.
T Consensus       230 Fl~~n~l~~IIR~Hq~v~~Gy~~~-~~~~--~iTVFSA~nYcg--~~~N~gavl~i~~~l  284 (294)
T PTZ00244        230 FLDMVDMDLIVRAHQVMERGYGFF-ASRQ--LVTVFSAPNYCG--EFDNDAAVMNIDDKL  284 (294)
T ss_pred             HHHHCCCCEEEECCCCHHCCCEEC-CCCC--EEEEECCCCCCC--CCCCCEEEEEECCCC
T ss_conf             999879928998672443520163-7997--999953801165--878757999999998


No 54 
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=95.98  E-value=0.13  Score=29.55  Aligned_cols=47  Identities=19%  Similarity=0.227  Sum_probs=31.2

Q ss_pred             CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf             79999374444899899999999998618997189994588422220
Q gi|255764495|r   66 DHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISG  112 (309)
Q Consensus        66 D~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~  112 (309)
                      ---++.||.+|+|.-.--..+.-+.-++.-|..|+.+.|||+.....
T Consensus        71 ~~YlFLGDYVDRG~~s~Evi~lL~alKv~yP~~v~LLRGNHE~~~~n  117 (303)
T PTZ00239         71 HNYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNIVLLRGNHESRQCT  117 (303)
T ss_pred             CCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCC
T ss_conf             65884786326788742899999999975898278605677473556


No 55 
>KOG0374 consensus
Probab=95.39  E-value=0.16  Score=28.88  Aligned_cols=198  Identities=13%  Similarity=0.131  Sum_probs=83.6

Q ss_pred             C-CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCCCCCCCCCCEE
Q ss_conf             9-79999374444899899999999998618997189994588422220356766432454313---4444455562127
Q gi|255764495|r   65 V-DHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITS---DTTCSTGKKLFPY  140 (309)
Q Consensus        65 p-D~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  140 (309)
                      | .-.++.||.+|+|...-.....-+.-.+.-|..++...|||+.........+.....+.+..   +.........-+.
T Consensus        86 p~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~~~~w~~F~~~f~~mp~  165 (331)
T KOG0374          86 PDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGEIKLWKAFNDAFNCLPL  165 (331)
T ss_pred             CCCCEEEECCCCCCCCCCEEEEEHHHHHHHHCCCEEEEECCCCCCCCCCCEEEHHHHHHHHCCHHHHHHHHHHHHHHCCH
T ss_conf             85528984553368866358775254434007863999536665765312022089999862328899999999864856


Q ss_pred             EEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC------CCCCCCHHHH
Q ss_conf             9971987999832888888755476008999999999985243369708999837688876431------1012797899
Q gi|255764495|r  141 LRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSL------YNRMFGIQRF  214 (309)
Q Consensus       141 ~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~------~~~~~~~~~l  214 (309)
                      .-..++ ++.+.....  .+.    ...-+|+..+.+-+. .++.+-..-+++-+|-.. ...|      ...+.+...+
T Consensus       166 ~a~i~~-kI~CmhGGl--sp~----l~~~~~i~~i~rp~~-~~~~gll~DLlWsdp~~~-~~g~~~n~Rg~s~~fg~~~v  236 (331)
T KOG0374         166 AALIDG-KILCMHGGL--SPH----LKSLDQIRAIPRPTD-SPDKGLLCDLLWSDPDDD-VPGWEENDRGVSFTFGPAVV  236 (331)
T ss_pred             HHEECC-CEEEECCCC--CHH----HCCHHHHHHCCCCCC-CCCCCEEEEEEECCCCCC-CCCCCCCCCCEEEEECHHHH
T ss_conf             434546-078864877--720----067688863558766-876320100240278888-67734478842067367999


Q ss_pred             HHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             99998749819999876753247871699868999957623577888877854899995389
Q gi|255764495|r  215 QKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKN  276 (309)
Q Consensus       215 ~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~  276 (309)
                      .+.+.+.+.+++.-+|.=...-...-.....+.+.++|.-+...     .+.-.+..++++.
T Consensus       237 ~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~Ycg~~-----~n~gavm~Vd~~l  293 (331)
T KOG0374         237 EDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPNYCGEF-----DNAGAVMRVDKNL  293 (331)
T ss_pred             HHHHHHHCCCEEEECCCCCHHHCEEECCCEEEEEECCCHHCCCC-----CCCCEEEEECCCC
T ss_conf             99987718546987573554120283586499995471322165-----7841899988897


No 56 
>pfam06874 FBPase_2 Firmicute fructose-1,6-bisphosphatase. This family consists of several bacterial fructose-1,6-bisphosphatase proteins (EC:3.1.3.11) which seem to be specific to phylum Firmicutes. Fructose-1,6-bisphosphatase (FBPase) is a well known enzyme involved in gluconeogenesis. This family does not seem to be structurally related to pfam00316.
Probab=95.25  E-value=0.014  Score=35.89  Aligned_cols=56  Identities=32%  Similarity=0.326  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf             9999999996269979999374444899899999999998618997189994588422220
Q gi|255764495|r   52 VANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISG  112 (309)
Q Consensus        52 ~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~  112 (309)
                      ++.++-..|+..-.|.+-|.|||.|+|+...     .+++.|-.-..|-+.-||||+.|.+
T Consensus       172 fIial~~lIqrL~VDhLHIvGDIyDRGp~pd-----~ImD~Lm~~hsvDIQWGNHDilWMG  227 (641)
T pfam06874       172 FIIALSNLIQRLVVDHLHIVGDIYDRGPGPD-----IIMDTLINYHSVDIQWGNHDILWMG  227 (641)
T ss_pred             HHHHHHHHHHHHHHHHHEECCCCCCCCCCHH-----HHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf             9999999998886645112153557899824-----9999986167744221652888877


No 57 
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=95.08  E-value=0.26  Score=27.48  Aligned_cols=196  Identities=12%  Similarity=0.016  Sum_probs=88.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCC--CCCCCCH------HHH---HHHHHHHHHHCCCCCEEEEECCCCCCCC-CHHH
Q ss_conf             30899999999996269979999374--4448998------999---9999999861899718999458842222-0356
Q gi|255764495|r   48 FSKEVANLLINDILLHNVDHVSITGD--IVNFTCN------REI---FTSTHWLRSIGNPHDISIVPGNHDAYIS-GAKE  115 (309)
Q Consensus        48 ~~~~~l~~~~~~i~~~~pD~vvitGD--l~~~~~~------~~~---~~~~~~~~~l~~~~~v~~v~GNHD~~~~-~~~~  115 (309)
                      .....++.+...++  +.|+.++.=-  ++....+      ..+   ....+.+...  ...+..+.-||=.-.. ....
T Consensus        18 ~~~~~~~~v~~~~~--~aD~~~~NlE~~i~~~~~~~~~~~~~~f~~~~~~~~~L~~~--G~d~~slANNH~~D~G~~Gl~   93 (239)
T smart00854       18 DFSPPFAGVKPLLR--AADLAIGNLETPITGSGSPASGKKYPNFRAPPENAAALKAA--GFDVVSLANNHSLDYGEEGLL   93 (239)
T ss_pred             CCHHHHHHHHHHHH--HCCEEEEECCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHC--CCCEEEECCCCCCCCCHHHHH
T ss_conf             83578999999997--49999996402662899878777661202999999999982--999899317634312089999


Q ss_pred             HHHHHHHHHHCCCC--CCCCCCCCCEEEEECCCEEEEEECCCCCCCC-----CCCCC--EECHHHHHHHHHHHHHCCCCC
Q ss_conf             76643245431344--4445556212799719879998328888887-----55476--008999999999985243369
Q gi|255764495|r  116 KSLHAWKDYITSDT--TCSTGKKLFPYLRIRNNIALIGCSTAIATPP-----FSANG--YFGQEQAHATSKLLRKANKKG  186 (309)
Q Consensus       116 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~-----~~~~g--~~~~~q~~~l~~~L~~~~~~~  186 (309)
                      .....+.+.-....  .........+.....++..+..+..+....+     ....+  .+.....+.+.+.+++++...
T Consensus        94 ~Ti~~L~~~gi~~~G~g~~~~~a~~p~~~~~~g~~va~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~k~~~  173 (239)
T smart00854       94 DTLAALDAAGIAHVGAGRNLAEARKPAIVEVKGIKIALLAYTYGTNNGWAASKDRPGVALLPDLDREKILADIARARKKA  173 (239)
T ss_pred             HHHHHHHHCCCCCCCCCCCHHHCCCCEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             99999998699615898995773782899989989999998707788643778998712157017999999999885279


Q ss_pred             CEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf             7089998376888764311012797899999987498199998767532478716998689999576
Q gi|255764495|r  187 FFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIAS  253 (309)
Q Consensus       187 ~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s  253 (309)
                      -.+|+.+|........    ......++...+.+.|+|+|+..|-|..+-..+..  +...+++.|.
T Consensus       174 D~vIv~~HwG~E~~~~----p~~~q~~~a~~lid~GaD~IiGhHpHv~q~~E~y~--~k~I~YSLGN  234 (239)
T smart00854      174 DVVIVSLHWGVEYQYE----PTDEQRELAHALIDAGADVVIGHHPHVLQPIEIYK--GKLIAYSLGN  234 (239)
T ss_pred             CEEEEEEECCCCCCCC----CCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEC--CEEEEEECCC
T ss_conf             9999993015778779----99999999999997699999928998788749999--9999996720


No 58 
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical); InterPro: IPR004617   Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) (3.6.1.41 from EC). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase .; GO: 0008803 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity.
Probab=94.62  E-value=0.032  Score=33.42  Aligned_cols=56  Identities=27%  Similarity=0.477  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHC-CCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             9999999999626-99799993744448998999999999986189971899945884222
Q gi|255764495|r   51 EVANLLINDILLH-NVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYI  110 (309)
Q Consensus        51 ~~l~~~~~~i~~~-~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~  110 (309)
                      +-+..+++.+.=. .-|-+.++|||+-+|...  -...++.+.|+...  -.|.||||...
T Consensus        14 DEl~~LL~~V~F~P~~D~LyL~GDLvARG~~S--L~~LR~VKSLG~~~--r~VLgNHDLHl   70 (280)
T TIGR00668        14 DELQLLLERVEFDPAQDTLYLTGDLVARGDGS--LEVLRYVKSLGNAA--RLVLGNHDLHL   70 (280)
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEEEEEECCCHH--HHHHHHHHHHHHHH--HHHHHCCHHHH
T ss_conf             89999998624788865467851133127405--77888887544688--88872020899


No 59 
>pfam09587 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=92.90  E-value=0.68  Score=24.70  Aligned_cols=216  Identities=14%  Similarity=0.064  Sum_probs=92.9

Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEC--CCCCCCCCH----HHH-
Q ss_conf             8899411142788541000222100012100000123308999999999962699799993--744448998----999-
Q gi|255764495|r   11 VLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSIT--GDIVNFTCN----REI-   83 (309)
Q Consensus        11 ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvit--GDl~~~~~~----~~~-   83 (309)
                      +|+.+.|+-|+......                .........++.+...++  ..|++++.  +=++..+.+    ..+ 
T Consensus         1 tl~f~GDi~l~~~~~~~----------------~~~~d~~~~~~~v~~~l~--~aD~~i~NlE~~~~~~~~~~~~~~~f~   62 (237)
T pfam09587         1 TLAFVGDVMLGRGLDQI----------------APPYDFDYPFADVKPLLR--AADLAIGNLETPITDSGEPYSGKPAFR   62 (237)
T ss_pred             CEEEEEEECCCCCHHHH----------------HCCCCCHHHHHHHHHHHH--HCCEEEEEECCCCCCCCCCCCCCCEEE
T ss_conf             96998646168845665----------------104880788999999986--199869981136548898789981577


Q ss_pred             --HHHHHHHHHHCCCCCEEEEECCCCCCCCC-HHHHHHHHHHHHHCCCC--CCCCCCCCCEEEEECCCEEEEEECCCCCC
Q ss_conf             --99999998618997189994588422220-35676643245431344--44455562127997198799983288888
Q gi|255764495|r   84 --FTSTHWLRSIGNPHDISIVPGNHDAYISG-AKEKSLHAWKDYITSDT--TCSTGKKLFPYLRIRNNIALIGCSTAIAT  158 (309)
Q Consensus        84 --~~~~~~~~~l~~~~~v~~v~GNHD~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~l~s~~~~  158 (309)
                        ....+.+..+  ...+..+.-||=.-... ..........+.-....  .........+.....++..+..+.-+...
T Consensus        63 ~~~~~~~~L~~~--G~d~vslANNH~~D~G~~G~~~T~~~L~~~gi~~~G~g~~~~~a~~p~~~~~~g~kia~l~~t~~~  140 (237)
T pfam09587        63 APPENAEALKAA--GFDVVSLANNHSLDYGEEGLLDTLDALDRAGIAHAGAGRNLEEARRPAILEVNGIRIAFLAYTYGT  140 (237)
T ss_pred             CCHHHHHHHHHC--CCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCEEEEECCCEEEEEEEECCC
T ss_conf             999999999984--999999577643325779999999999987996058889946627808999799389999987587


Q ss_pred             C----CCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             8----755476008999999999985243369708999837688876431101279789999998749819999876753
Q gi|255764495|r  159 P----PFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLN  234 (309)
Q Consensus       159 ~----~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~  234 (309)
                      .    +....+ ......+.+.+.+++++.+.-.+|+.+|.......    .......++...+.+.|+|+|+..|-|..
T Consensus       141 ~~~~~~~~~~~-~~~~~~~~i~~~i~~~k~~~D~vIv~~HwG~E~~~----~p~~~q~~~a~~lidaGaDlIiGhHpHv~  215 (237)
T pfam09587       141 NGWGAGPYRPG-VNPLDEEKIKADIRRAKKKADIVIVSLHWGVEYQY----EPTPEQRELAHALIDAGADLVIGHHPHVL  215 (237)
T ss_pred             CCCCCCCCCCC-CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC----CCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             87567888875-57569999999999875079999998775667876----99999999999999779999991899878


Q ss_pred             EEEEEECCCCCEEEEEECC
Q ss_conf             2478716998689999576
Q gi|255764495|r  235 SLHWIKNEKKLIPVVGIAS  253 (309)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~s  253 (309)
                      +-..+.  .+...+++.|.
T Consensus       216 q~iE~y--~~~~I~YSLGN  232 (237)
T pfam09587       216 QPIEVY--KGKLIAYSLGN  232 (237)
T ss_pred             CCEEEE--CCEEEEEECCC
T ss_conf             874999--99999996720


No 60 
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=92.72  E-value=0.72  Score=24.54  Aligned_cols=164  Identities=15%  Similarity=0.062  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999999962699799993744448998999999999986189971899945884222203567664324543134444
Q gi|255764495|r   52 VANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTC  131 (309)
Q Consensus        52 ~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~  131 (309)
                      +.+.+-..-.+.++|+|++.|--+-.|.--..+.+.++++ .  ...| +..|||-...+...+- ........+...-.
T Consensus        18 v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~y~~l~~-~--G~dv-iT~GNH~wd~~ei~~~-i~~~~~ilRP~N~p   92 (266)
T COG1692          18 VKEHLPQLKSKYKIDFVIVNGENAAGGFGITEKIYKELLE-A--GADV-ITLGNHTWDQKEILDF-IDNADRILRPANYP   92 (266)
T ss_pred             HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHH-H--CCCE-EECCCCCCCCHHHHHH-HHCCCCEECCCCCC
T ss_conf             9987077787506738998573045776777999999998-5--8878-9626633344577877-63344254357788


Q ss_pred             CCCCCCCEEEEECCCEEEEEEC--CCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             4555621279971987999832--88888875547600899999999998524336970899983768887643110127
Q gi|255764495|r  132 STGKKLFPYLRIRNNIALIGCS--TAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMF  209 (309)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~i~l~--s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~  209 (309)
                      ..-.+..+.+....+..+...|  .-....+.     + ..-+.-+++.+...+......+|-+|.--.+.-.       
T Consensus        93 ~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~-----~-d~PF~~~d~l~~~~~~~~~~iiVDFHAEtTSEK~-------  159 (266)
T COG1692          93 DGTPGKGSRIFKINGKKLAVINLMGRVFMPPA-----L-DNPFKAADKLLDEIKLGTDLIIVDFHAETTSEKN-------  159 (266)
T ss_pred             CCCCCCEEEEEEECCCEEEEEEEECCCCCCCC-----C-CCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHH-------
T ss_conf             89986347999968928999984313358600-----1-7978999999974746896499981265215552-------


Q ss_pred             CHHHHHHHHHHCCCEEEEECCCCCCEEE
Q ss_conf             9789999998749819999876753247
Q gi|255764495|r  210 GIQRFQKMIWHEGADLILHGHTHLNSLH  237 (309)
Q Consensus       210 ~~~~l~~~l~~~~v~lvl~GH~H~~~~~  237 (309)
                          ...+.....+.+++-=|+|.+...
T Consensus       160 ----a~g~yldGrvsavvGTHTHV~TaD  183 (266)
T COG1692         160 ----AFGWYLDGRVSAVVGTHTHVPTAD  183 (266)
T ss_pred             ----HHHEEECCEEEEEEECCCCCCCCC
T ss_conf             ----010688672889985467655641


No 61 
>PRK10425 DNase TatD; Provisional
Probab=91.99  E-value=0.89  Score=23.96  Aligned_cols=127  Identities=19%  Similarity=0.089  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999999962699799993744448998999999999986189971899945884222203567664324543134444
Q gi|255764495|r   52 VANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTC  131 (309)
Q Consensus        52 ~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~  131 (309)
                      -++.+++.+++.+.+.+++.|=     .++++..+.++.+...   .++...|=|=....................    
T Consensus        16 d~~~vl~rA~~~gV~~ii~~g~-----~~~~~~~~~~la~~~~---~v~~~~GiHP~~~~~~~~~~~~~l~~~~~~----   83 (258)
T PRK10425         16 DRDDVVARAFAAGVNGLLITGT-----NLRESQQAQKLARQYP---SCWSTAGVHPHDSSQWQAATEEAIIELAAQ----   83 (258)
T ss_pred             CHHHHHHHHHHCCCCEEEEECC-----CHHHHHHHHHHHHHCC---CCEEEECCCCHHHHHCCHHHHHHHHHHHCC----
T ss_conf             8999999999879998999469-----9999999999998688---735983358123323685789999998548----


Q ss_pred             CCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCH
Q ss_conf             45556212799719879998328888887554760089999999999852433697089998376888764311012797
Q gi|255764495|r  132 STGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGI  211 (309)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~  211 (309)
                             +.+.   .+.-+|||-....       .....|..+++++|+-+..-+.+++  .|.-            .-.
T Consensus        84 -------~~~v---AIGEiGLDy~~~~-------~~~~~Q~~~F~~ql~lA~~~~lPvi--iH~R------------~A~  132 (258)
T PRK10425         84 -------PEVV---AIGECGLDFNRNF-------STPEEQERAFVAQLRIAAELNMPVF--MHCR------------DAH  132 (258)
T ss_pred             -------CCEE---EEEECCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHCCCEE--EEEC------------CCH
T ss_conf             -------9827---9961221677568-------9999999999999999999799879--9964------------415


Q ss_pred             HHHHHHHHHC
Q ss_conf             8999999874
Q gi|255764495|r  212 QRFQKMIWHE  221 (309)
Q Consensus       212 ~~l~~~l~~~  221 (309)
                      +++.++|+++
T Consensus       133 ~~~l~iL~~~  142 (258)
T PRK10425        133 ERFLTLLEPW  142 (258)
T ss_pred             HHHHHHHHHH
T ss_conf             8999999997


No 62 
>PRK09982 universal stress protein UspD; Provisional
Probab=91.78  E-value=0.93  Score=23.81  Aligned_cols=110  Identities=12%  Similarity=0.100  Sum_probs=57.8

Q ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC
Q ss_conf             99993744448998999999999986189971899945884222203567664324543134444455562127997198
Q gi|255764495|r   67 HVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNN  146 (309)
Q Consensus        67 ~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (309)
                      .|+++=|++... ..-.+.|..+.+.+.+..-+..|-+|+-....+                                  
T Consensus         5 HILVAVdLs~eS-~~Li~KAv~lAk~~~AklSlIhvd~~~~elY~g----------------------------------   49 (142)
T PRK09982          5 HIGVAISGNEED-ALLVNKALELARHNDAHLTLIHIDDGLSELYPG----------------------------------   49 (142)
T ss_pred             EEEEEEECCHHH-HHHHHHHHHHHHHCCCEEEEEEEECCCHHHCCH----------------------------------
T ss_conf             799998558416-999999999987609839999990884665110----------------------------------


Q ss_pred             EEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
Q ss_conf             79998328888887554760089999999999852433697089998376888764311012797899999987498199
Q gi|255764495|r  147 IALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLI  226 (309)
Q Consensus       147 ~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lv  226 (309)
                      +..+.+.        .....+.++...+|++..+++..+=.. .++.+.-           +  .+.+.+.++++++|++
T Consensus        50 l~~~~~~--------~~~~~~~e~~~~~L~~L~~~~~YPI~~-~~v~~Gd-----------l--~~~L~~~v~~~~iDLl  107 (142)
T PRK09982         50 IYFPATE--------DILQLLKNKSDNKLYKLTKNIQWPKTK-LRIERGE-----------M--PETLLEIMQKEQCDLL  107 (142)
T ss_pred             HCCCCHH--------HHHHHHHHHHHHHHHHHHHHCCCCCEE-EEEEECC-----------H--HHHHHHHHHHHCCCEE
T ss_conf             2053125--------688999999999999999847998247-8998448-----------8--9999999998499889


Q ss_pred             EECCCCC
Q ss_conf             9987675
Q gi|255764495|r  227 LHGHTHL  233 (309)
Q Consensus       227 l~GH~H~  233 (309)
                      +|||-|.
T Consensus       108 IcGHHh~  114 (142)
T PRK09982        108 VCGHHHS  114 (142)
T ss_pred             EECCCHH
T ss_conf             9656286


No 63 
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=91.43  E-value=0.2  Score=28.18  Aligned_cols=54  Identities=31%  Similarity=0.323  Sum_probs=36.4

Q ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf             99999996269979999374444899899999999998618997189994588422220
Q gi|255764495|r   54 NLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISG  112 (309)
Q Consensus        54 ~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~  112 (309)
                      -++...++..-.|.+-+.|||.++|+-.+     .+++.|..-..+-+--||||..+.+
T Consensus       180 ~ala~~iqrLvVDhLHiVGDIyDRGP~pd-----~Imd~L~~yhsvDiQWGNHDilWmg  233 (648)
T COG3855         180 IALAYLIQRLVVDHLHIVGDIYDRGPYPD-----KIMDTLINYHSVDIQWGNHDILWMG  233 (648)
T ss_pred             HHHHHHHHHHHHHHEEEECCCCCCCCCCH-----HHHHHHHHCCCCCCCCCCCCEEEEE
T ss_conf             99999999983534034010124799830-----7999986225534211676547751


No 64 
>KOG0371 consensus
Probab=91.02  E-value=0.84  Score=24.11  Aligned_cols=57  Identities=19%  Similarity=0.171  Sum_probs=34.8

Q ss_pred             HHHHCCCC-EEEECCCCCCCCCHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCCCHHHHH
Q ss_conf             99626997-9999374444899899999999998618--99718999458842222035676
Q gi|255764495|r   59 DILLHNVD-HVSITGDIVNFTCNREIFTSTHWLRSIG--NPHDISIVPGNHDAYISGAKEKS  117 (309)
Q Consensus        59 ~i~~~~pD-~vvitGDl~~~~~~~~~~~~~~~~~~l~--~~~~v~~v~GNHD~~~~~~~~~~  117 (309)
                      .|....|| --++.||.++.|....  .....+-.+.  -|..|.++.|||+...-.....+
T Consensus        80 kiGG~~pdtnylfmGDyvdrGy~Sv--etVS~lva~Kvry~~rvtilrGNHEsrqitqvygf  139 (319)
T KOG0371          80 KIGGLAPDTNYLFMGDYVDRGYYSV--ETVSLLVALKVRYPDRVTILRGNHESRQITQVYGF  139 (319)
T ss_pred             HCCCCCCCCCEEEEEEECCCCCCHH--HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf             7058887761365541102464047--88999987431566406882286188889999831


No 65 
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=89.95  E-value=1.4  Score=22.71  Aligned_cols=75  Identities=16%  Similarity=0.170  Sum_probs=47.0

Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHH-----HHCCCCEEEECCCCCCCC----CH-
Q ss_conf             88994111427885410002221000121000001233089999999999-----626997999937444489----98-
Q gi|255764495|r   11 VLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDI-----LLHNVDHVSITGDIVNFT----CN-   80 (309)
Q Consensus        11 ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i-----~~~~pD~vvitGDl~~~~----~~-   80 (309)
                      -++.+||.+|..+                        ...++|+.+...-     ...-|-+.|+.||++..+    .. 
T Consensus        29 ~~VilsDVwLD~p------------------------~t~E~L~kMf~~y~~~~~~d~~P~~fVlmGnF~S~pf~~~~~~   84 (307)
T PTZ00235         29 NWIIMHDVYLDSP------------------------YTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNF   84 (307)
T ss_pred             CEEEEEEEECCCC------------------------CHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCH
T ss_conf             5899975422780------------------------0799999999875125765569778999635424776788624


Q ss_pred             -----HHHHHHHHHH----HHHCCCCCEEEEECCCCCC
Q ss_conf             -----9999999999----8618997189994588422
Q gi|255764495|r   81 -----REIFTSTHWL----RSIGNPHDISIVPGNHDAY  109 (309)
Q Consensus        81 -----~~~~~~~~~~----~~l~~~~~v~~v~GNHD~~  109 (309)
                           +-|+.+..++    ..+...+.+.+|||--|..
T Consensus        85 ~~~Y~~GF~~La~lLiSkFp~ile~s~fVFVPGp~DP~  122 (307)
T PTZ00235         85 HKVYIKGFEKLSVMLISKFKLILEHCYLIFIPGINDPC  122 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCC
T ss_conf             89999889999999986635767410499955999865


No 66 
>PRK04286 hypothetical protein; Provisional
Probab=89.21  E-value=1.2  Score=23.08  Aligned_cols=63  Identities=17%  Similarity=0.248  Sum_probs=32.7

Q ss_pred             CEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCC-CC-CCHHHHHHHHHHCCCEEEEECCCCCCE
Q ss_conf             600899999999998524336970899983768887643110-12-797899999987498199998767532
Q gi|255764495|r  165 GYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYN-RM-FGIQRFQKMIWHEGADLILHGHTHLNS  235 (309)
Q Consensus       165 g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~-~~-~~~~~l~~~l~~~~v~lvl~GH~H~~~  235 (309)
                      |-+.++++.|+.+.        .+.+++.-.||..-...... .+ ...+.+.+++...+-.+|+-=|.=+..
T Consensus       188 G~~~~e~v~~il~~--------~P~ivii~GPPtYL~gr~~~~~le~~i~Nl~~ii~~~~~~lIlDHHllRD~  252 (294)
T PRK04286        188 GPLNDEAVEFILEK--------KPTVVIIGGPPTYLLYRVSGEDLEKGIENLERIILLRPKTLILDHHLLRDI  252 (294)
T ss_pred             CCCCHHHHHHHHHC--------CCCEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEECHHHCCC
T ss_conf             76878999999863--------999899679845652204676699999999999981898799814133052


No 67 
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183    Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) .   For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=87.63  E-value=2  Score=21.69  Aligned_cols=62  Identities=21%  Similarity=0.147  Sum_probs=45.8

Q ss_pred             HCCCCCCCHHHHHHHHHHHHHCCCC-EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             0001233089999999999626997-99993744448998999999999986189971899945884
Q gi|255764495|r   42 FNRKKYFSKEVANLLINDILLHNVD-HVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHD  107 (309)
Q Consensus        42 ~~~~~~~~~~~l~~~~~~i~~~~pD-~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD  107 (309)
                      ++|-+...++-++++++.+++++-| +|||.||=+|.    .-..+.+.+.+-..+++|.-||===|
T Consensus       146 SGRtKI~T~Eq~~~al~~~k~l~LdgLVIIGGDdSNT----nAA~LAEyF~~~~~~t~viGVPKTID  208 (566)
T TIGR02477       146 SGRTKIETEEQFAKALETAKKLKLDGLVIIGGDDSNT----NAALLAEYFAKKGLKTQVIGVPKTID  208 (566)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHH----HHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             6854556888999999998760896489974798679----99999999997389922786402547


No 68 
>KOG3818 consensus
Probab=87.48  E-value=2  Score=21.63  Aligned_cols=83  Identities=14%  Similarity=0.232  Sum_probs=46.8

Q ss_pred             CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC----
Q ss_conf             3255327889941114278854100022210001210000012330899999999996269979999374444899----
Q gi|255764495|r    4 RYTTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTC----   79 (309)
Q Consensus         4 ~~~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~----   79 (309)
                      .++..|  |+.|||+||...                        .-...|..+++-.+...|-+||..|-.+....    
T Consensus       279 ~~~d~~--fVfLSdV~LD~~------------------------~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~s  332 (525)
T KOG3818         279 ENTDTS--FVFLSDVFLDDK------------------------KVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQTSS  332 (525)
T ss_pred             HCCCCE--EEEEEHHCCCCH------------------------HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCH
T ss_conf             474744--999751103659------------------------999999999831568998389995465566556536


Q ss_pred             HHHHHHHHHHHHHHC-------CCCCEEEEECCCCCCCCC
Q ss_conf             899999999998618-------997189994588422220
Q gi|255764495|r   80 NREIFTSTHWLRSIG-------NPHDISIVPGNHDAYISG  112 (309)
Q Consensus        80 ~~~~~~~~~~~~~l~-------~~~~v~~v~GNHD~~~~~  112 (309)
                      -..+.....++....       ....+.+|||-.|.+...
T Consensus       333 ~~~~k~~f~~LA~~l~~~~~~~ekT~fIFVPGP~Dp~~~~  372 (525)
T KOG3818         333 SDQLKDGFRWLAAQLTCFRKDYEKTQFIFVPGPNDPWVDN  372 (525)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf             8999988999986423234531012389945998877676


No 69 
>TIGR00486 TIGR00486 conserved hypothetical protein TIGR00486; InterPro: IPR002678   This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown ..
Probab=87.46  E-value=1.7  Score=22.17  Aligned_cols=64  Identities=13%  Similarity=0.008  Sum_probs=36.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEE-ECCCCCCCCCHHH-HHHHHHHHHHH-CCCCCEEEEECCCCCCCC
Q ss_conf             3089999999999626997999-9374444899899-99999999861-899718999458842222
Q gi|255764495|r   48 FSKEVANLLINDILLHNVDHVS-ITGDIVNFTCNRE-IFTSTHWLRSI-GNPHDISIVPGNHDAYIS  111 (309)
Q Consensus        48 ~~~~~l~~~~~~i~~~~pD~vv-itGDl~~~~~~~~-~~~~~~~~~~l-~~~~~v~~v~GNHD~~~~  111 (309)
                      ...+..+.+++.+.+.+.|+|| +=|=+...-.+-. -....+.++.| ..++.+|.+-=|=|....
T Consensus        52 ~~vD~s~~~~~~A~~~~~d~i~~HHp~~~~~~~~~~~~~~~~~~~k~Ll~~~i~lY~~HtnlD~~~~  118 (325)
T TIGR00486        52 VAVDASESVAKEAKEKNADLIITHHPLIFKPLKRLIRGIKPKRLLKILLENDISLYSAHTNLDAHRG  118 (325)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCHHHCC
T ss_conf             6777899999999853797999807864287222366641036788988679613410460023304


No 70 
>KOG0372 consensus
Probab=84.77  E-value=2.3  Score=21.25  Aligned_cols=47  Identities=17%  Similarity=0.156  Sum_probs=28.9

Q ss_pred             CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf             79999374444899899999999998618997189994588422220
Q gi|255764495|r   66 DHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISG  112 (309)
Q Consensus        66 D~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~  112 (309)
                      .--++.||.+++|.-.--....-+.-++.-|..+..+.|||+...-.
T Consensus        71 t~YlFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqit  117 (303)
T KOG0372          71 TNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQIT  117 (303)
T ss_pred             CCEEEECCHHCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
T ss_conf             86676412010460169999999999602864057751473221235


No 71 
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=84.57  E-value=2.7  Score=20.74  Aligned_cols=98  Identities=16%  Similarity=0.073  Sum_probs=43.0

Q ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHH--HHHHHHHHHHCCCCEEEEC-C--CCCCCC-CHHHHH
Q ss_conf             889941114278854100022210001210000012330899--9999999962699799993-7--444489-989999
Q gi|255764495|r   11 VLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEV--ANLLINDILLHNVDHVSIT-G--DIVNFT-CNREIF   84 (309)
Q Consensus        11 ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~i~~~~pD~vvit-G--Dl~~~~-~~~~~~   84 (309)
                      ||+|+.|-|+...--...+.+.--.-+-|.-.+...-.....  .+.+.+.++..+||+||+. |  |..... ..++|.
T Consensus         1 ~i~~~gdS~~~~d~~~~~~r~~~GV~~~~~gi~GA~~~~~~~~~~~~~~~ql~~~~PDLVil~~GtNda~~~~~~~~~~~   80 (189)
T cd01825           1 RIAQLGDSHIAGDFFTDVLRGLLGVIYDNLGVNGASASLLLKWDAEFLQAQLAALPPDLVILSYGTNEAFNKQLNASEYR   80 (189)
T ss_pred             CEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf             94463476547745345425988879961676862324553368899999997359998999905642356899999999


Q ss_pred             -HHHHHHHHH---CCCCCEEEEECCCCCC
Q ss_conf             -999999861---8997189994588422
Q gi|255764495|r   85 -TSTHWLRSI---GNPHDISIVPGNHDAY  109 (309)
Q Consensus        85 -~~~~~~~~l---~~~~~v~~v~GNHD~~  109 (309)
                       ...++++.+   ....++ .+.|.-|.+
T Consensus        81 ~~~~~~I~~ir~~~P~a~i-ll~~p~d~~  108 (189)
T cd01825          81 QQLREFIKRLRQILPNASI-LLVGPPDSL  108 (189)
T ss_pred             HHHHHHHHHHHHHCCCCEE-EEECCCCHH
T ss_conf             9999999999975899809-998288276


No 72 
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=84.51  E-value=2.5  Score=20.96  Aligned_cols=92  Identities=17%  Similarity=0.199  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCC---------EEEEECCCCCCEEEEEECC
Q ss_conf             9999999852433697089998376888764311012797899999987498---------1999987675324787169
Q gi|255764495|r  172 AHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGA---------DLILHGHTHLNSLHWIKNE  242 (309)
Q Consensus       172 ~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v---------~lvl~GH~H~~~~~~~~~~  242 (309)
                      ++.|++.+...+  .+..|+.-=|+|...-  |..  ..-..+.++.++++|         |+++.||.|.+....-...
T Consensus       147 ~~~LE~~~~~~~--vkl~iLCnPHNP~Grv--wt~--eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~  220 (388)
T COG1168         147 FDALEKAFVDER--VKLFILCNPHNPTGRV--WTK--EELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERF  220 (388)
T ss_pred             HHHHHHHHHCCC--CCEEEEECCCCCCCCC--CCH--HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHCCHHH
T ss_conf             999999984377--6089993799999864--369--9999999999983998983033566121698766543269554


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCEEEEE
Q ss_conf             98689999576235778888778548999
Q gi|255764495|r  243 KKLIPVVGIASASQKVHSNKPQASYNLFY  271 (309)
Q Consensus       243 ~~~~~~~~~~s~~~~~~~~~~~~~y~li~  271 (309)
                        .-..+.+.|+|.++.-.+-..+|-+|.
T Consensus       221 --a~~~it~~saSKtFNlaGL~~a~~Ii~  247 (388)
T COG1168         221 --ADNSITLTSASKTFNLAGLKCAYIIIS  247 (388)
T ss_pred             --HCCEEEEEECCCCCCCHHHHHEEEEEC
T ss_conf             --323599840522156044442147834


No 73 
>cd01310 TatD_DNAse TatD like proteins;  E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=77.21  E-value=4.9  Score=19.05  Aligned_cols=128  Identities=10%  Similarity=0.040  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999999962699799993744448998999999999986189971899945884222203567664324543134444
Q gi|255764495|r   52 VANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTC  131 (309)
Q Consensus        52 ~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~  131 (309)
                      -++.+++.+.+.+...+++.|-     .++++..+.++.+..   ..++...|=|=.+..............+.....  
T Consensus        16 d~~~vi~~a~~~gv~~ii~~~~-----~~~~~~~~~~la~~~---~~i~~~~GiHP~~~~~~~~~~~~~l~~~~~~~~--   85 (251)
T cd01310          16 DRDDVLARAREAGVIKIIVVGT-----DLKSSKRALELAKKY---DNVYAAVGLHPHDADEHVDEDLDLLELLAANPK--   85 (251)
T ss_pred             CHHHHHHHHHHCCCCEEEEECC-----CHHHHHHHHHHHHHC---CCEEEEECCCHHHHHHCCHHHHHHHHHHHCCCC--
T ss_conf             9999999999869988999689-----999999999999759---986898236837651235779999999972899--


Q ss_pred             CCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCH
Q ss_conf             45556212799719879998328888887554760089999999999852433697089998376888764311012797
Q gi|255764495|r  132 STGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGI  211 (309)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~  211 (309)
                               +   -.+.-+|||-....       ...+.|.+.++++|+-+.+-+.+  ++.|..            .-.
T Consensus        86 ---------~---vaIGEiGLD~~~~~-------~~~~~Q~~~F~~ql~lA~~~~lP--v~iH~R------------~A~  132 (251)
T cd01310          86 ---------V---VAIGEIGLDYYRDK-------SPREVQKEVFRAQLELAKELNLP--VVIHSR------------DAH  132 (251)
T ss_pred             ---------E---EEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHCCC--EEEEEC------------CCH
T ss_conf             ---------0---69985014888889-------98999999999999999875788--489864------------547


Q ss_pred             HHHHHHHHHCC
Q ss_conf             89999998749
Q gi|255764495|r  212 QRFQKMIWHEG  222 (309)
Q Consensus       212 ~~l~~~l~~~~  222 (309)
                      +++.++|++++
T Consensus       133 ~~~l~iL~~~~  143 (251)
T cd01310         133 EDVLEILKEYG  143 (251)
T ss_pred             HHHHHHHHHCC
T ss_conf             99999999708


No 74 
>KOG4184 consensus
Probab=76.55  E-value=4.2  Score=19.52  Aligned_cols=49  Identities=10%  Similarity=0.129  Sum_probs=30.0

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEECCCC-CCCCCHH-HHHHHHHHHHHHC
Q ss_conf             23308999999999962699799993744-4489989-9999999998618
Q gi|255764495|r   46 KYFSKEVANLLINDILLHNVDHVSITGDI-VNFTCNR-EIFTSTHWLRSIG   94 (309)
Q Consensus        46 ~~~~~~~l~~~~~~i~~~~pD~vvitGDl-~~~~~~~-~~~~~~~~~~~l~   94 (309)
                      ..-....+|.+.+.++.-+||+||++|=- .+.-+.+ .-+..++..+.|.
T Consensus       220 ~n~~m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~  270 (478)
T KOG4184         220 NNPHMRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLS  270 (478)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             980798999999999973997699964368765418989999999999875


No 75 
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase; InterPro: IPR006323   These sequences represent an enzyme that catalyzes the cleavage of the carbon phosphorous bond of a phosphonate. The mechanism depends on the substrate having a carbonyl one carbon away from the cleavage position. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base . The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilised by microorganisms as a chemical warfare agent..
Probab=74.75  E-value=5.7  Score=18.63  Aligned_cols=44  Identities=16%  Similarity=0.295  Sum_probs=35.8

Q ss_pred             CCHHHHHHHHHHHHHC--CCCEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf             3089999999999626--9979999374444899899999999998
Q gi|255764495|r   48 FSKEVANLLINDILLH--NVDHVSITGDIVNFTCNREIFTSTHWLR   91 (309)
Q Consensus        48 ~~~~~l~~~~~~i~~~--~pD~vvitGDl~~~~~~~~~~~~~~~~~   91 (309)
                      ++....+.+++.+..+  +||+||-|=|+.+.|+|.-+..++..++
T Consensus       122 Ypr~vMd~v~~~Aa~~GY~pD~vVatDdvpq~GRP~P~~alkNvie  167 (199)
T TIGR01422       122 YPREVMDIVVAEAALQGYKPDFVVATDDVPQAGRPYPFMALKNVIE  167 (199)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf             7578999999999747897664246622467889747899998987


No 76 
>TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.     The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported.   This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis ..
Probab=73.76  E-value=3  Score=20.50  Aligned_cols=15  Identities=7%  Similarity=0.078  Sum_probs=9.1

Q ss_pred             EEEEEECCCCCEEEE
Q ss_conf             999951377611575
Q gi|255764495|r  282 EGKRYTLSPDSLSIQ  296 (309)
Q Consensus       282 ~~~r~~~~~d~~~~~  296 (309)
                      -..|.++++-...|.
T Consensus       248 i~~k~a~T~f~e~V~  262 (292)
T TIGR02855       248 IVEKVAFTPFMERVN  262 (292)
T ss_pred             EEEEEEECCCCCEEE
T ss_conf             011002325566453


No 77 
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=72.99  E-value=6.3  Score=18.35  Aligned_cols=76  Identities=16%  Similarity=0.101  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf             99999998524336970899983768887643110127978999999874981999987675324787169986899995
Q gi|255764495|r  172 AHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGI  251 (309)
Q Consensus       172 ~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~  251 (309)
                      +......+..++.....+|+++|+.-......    .....++...+...|++++..+|-|..+-..+.+ ++....++-
T Consensus       210 ~~~~~~~v~~a~k~adlviv~~HwG~ey~~~p----~~~q~~~a~~lidAGa~iIvGhhpHvlqpiE~~~-~~k~I~YsL  284 (372)
T COG2843         210 LERVLAAVLAAKKGADLVIVQPHWGVEYAYEP----AAGQRALARRLIDAGADIIVGHHPHVLQPIEIYI-QGKPILYSL  284 (372)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC----CHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEC-CCCEEEEEC
T ss_conf             11569999853226987999646654226787----3789999999886475848548987676658862-894799831


Q ss_pred             C
Q ss_conf             7
Q gi|255764495|r  252 A  252 (309)
Q Consensus       252 ~  252 (309)
                      +
T Consensus       285 G  285 (372)
T COG2843         285 G  285 (372)
T ss_pred             C
T ss_conf             7


No 78 
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase; InterPro: IPR004816   Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A reductase, HMG-CoA reductase.    There are two distinct classes of hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase enzymes: class I consists of eukaryotic and most archaeal enzymes (1.1.1.34 from EC), while class II consists of prokaryotic enzymes (1.1.1.88 from EC) , .   Class I HMG-CoA reductases catalyse the NADP-dependent synthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA). In vertebrates, membrane-bound HMG-CoA reductase is the rate-limiting enzyme in the biosynthesis of cholesterol and other isoprenoids. In plants, mevalonate is the precursor of all isoprenoid compounds . The reduction of HMG-CoA to mevalonate is regulated by feedback inhibition by sterols and non-sterol metabolites derived from mevalonate, including cholesterol. In archaea, HMG-CoA reductase is a cytoplasmic enzyme involved in the biosynthesis of the isoprenoids side chains of lipids . Class I HMG-CoA reductases consist of an N-terminal membrane domain (lacking in archaeal enzymes), and a C-terminal catalytic region. The catalytic region can be subdivided into three domains: an N-domain (N-terminal), a large L-domain, and a small S-domain (inserted within the L-domain). The L-domain binds the substrate, while the S-domain binds NADP.    Class II HMG-CoA reductases catalyse the reverse reaction of class I enzymes, namely the NAD-dependent synthesis of HMG-CoA from mevalonate and CoA . Some bacteria, such as Pseudomonas mevalonii, can use mevalonate as the sole carbon source. Class II enzymes lack a membrane domain. Their catalytic region is structurally related to that of class I enzymes, but it consists of only two domains: a large L-domain and a small S-domain (inserted within the L-domain). As with class I enzymes, the L-domain binds substrate, but the S-domain binds NAD (instead of NADP in class I).   This entry represents Metazoan class I HMG-CoA reductases, which are membrane-bound glycoproteins that remains in the endoplasmic reticulum after synthesis and glycosylation .; GO: 0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity, 0050661 NADP binding, 0008299 isoprenoid biosynthetic process, 0005789 endoplasmic reticulum membrane.
Probab=72.69  E-value=4.4  Score=19.40  Aligned_cols=69  Identities=16%  Similarity=0.182  Sum_probs=43.1

Q ss_pred             CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC-CCCHH
Q ss_conf             43255327889941114278854100022210001210000012330899999999996269979999374444-89989
Q gi|255764495|r    3 KRYTTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVN-FTCNR   81 (309)
Q Consensus         3 ~~~~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~-~~~~~   81 (309)
                      ++|+++. ||+-|+++|+....+.  +                                  =.-|+-+|||=-= +.--.
T Consensus       692 ~~FDSTS-RFArL~~~h~~~aGR~--L----------------------------------yiRF~a~TGDaMGMNMiSK  734 (988)
T TIGR00920       692 DAFDSTS-RFARLKKIHIAVAGRN--L----------------------------------YIRFQAKTGDAMGMNMISK  734 (988)
T ss_pred             HCCCCCC-HHHHHHHHHHEECCCC--E----------------------------------EEEEEECCCCCCCCCHHHH
T ss_conf             2157643-1355522100002764--0----------------------------------3654530478666310228


Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             999999999861899718999458842
Q gi|255764495|r   82 EIFTSTHWLRSIGNPHDISIVPGNHDA  108 (309)
Q Consensus        82 ~~~~~~~~~~~l~~~~~v~~v~GNHD~  108 (309)
                      -.+.+...++...+...|..+-||-=.
T Consensus       735 gte~AL~~lq~~FPdm~IlslSGNyCT  761 (988)
T TIGR00920       735 GTEQALAELQEVFPDMEILSLSGNYCT  761 (988)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf             899999998754888089640366156


No 79 
>TIGR00010 TIGR00010 hydrolase, TatD family; InterPro: IPR015991   Escherichia coli TatD (synonym MttC) has been shown experimentally to be a DNase . On the basis of operon structure, it was originally thought to be involved in the Sec-independent export of protein precursors bearing twin arginine signal peptides by the Tat system . This alternative membrane targeting and translocation system (Mtt), also called twin arginine translocase (Tat) (MttA1A2BC or TatABCD), has been shown to transport fully folded proteins to, or across, the membrane , . However, it was later determined that TatD is not required for this translocation process , . Furthermore, it was noted that no exact correlation exists between the ability of an organism to synthesise a TatD-like protein and whether that organism has a Tat protein transport pathway . Also, with the exception of Escherichia coli , the genetic linkage between TatD and other Tat genes (operon structure) is not maintained.  Members of this group may be distantly related to a large 3D fold-based domain superfamily of metalloenzymes . The description of this fold superfamily was based on an analysis of conservation patterns in three dimensions, and the discovery that the same active-site architecture occurs in a large set of enzymes involved primarily in nucleotide metabolism. The group is thought to include urease, dihydroorotase, allantoinase, hydantoinase, AMP-, adenine- and cytosine- deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolase, formylmethanofuran dehydrogenase, and other enzymes ..
Probab=72.57  E-value=6.4  Score=18.29  Aligned_cols=137  Identities=11%  Similarity=0.087  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             999999999626997999937444489989999-9999998618997189994588422220356766432454313444
Q gi|255764495|r   52 VANLLINDILLHNVDHVSITGDIVNFTCNREIF-TSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTT  130 (309)
Q Consensus        52 ~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~-~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~  130 (309)
                      -++.+++.+++.+...||..|+=     ..++. .+.++.+.-. ...||+..|=|=.-.............+.......
T Consensus        19 d~~~v~~ra~~~~v~~~v~vg~~-----l~~~~W~~~~l~~~~~-g~~v~~~~G~HP~d~~~~~~~~~~~l~~l~~~~~~   92 (269)
T TIGR00010        19 DVEEVIERAKAEGVTAVVDVGTD-----LEDLNWRALELAEKYP-GDNVYAAVGVHPLDVEDDTKEDIKELEKLAKNAHP   92 (269)
T ss_pred             CHHHHHHHHHHCCCEEEEEECCC-----CCCCHHHHHHHHHHCC-CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             58999999997499299973467-----0020699999998479-97699982268722204208999999999985069


Q ss_pred             CCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEEC--HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf             44555621279971987999832888888755476008--9999999999852433697089998376888764311012
Q gi|255764495|r  131 CSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFG--QEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRM  208 (309)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~--~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~  208 (309)
                               .+.-   +.=+|||-....       ...  ..|.+-++.+|+-+..-+.+  ++.|-.            
T Consensus        93 ---------~v~A---iGE~GLDY~~~~-------~~~e~~~Q~e~F~~q~~lA~~~~~P--~iiH~R------------  139 (269)
T TIGR00010        93 ---------KVVA---IGETGLDYYKAD-------EKKERRRQKEVFRAQLQLAEELNLP--VIIHAR------------  139 (269)
T ss_pred             ---------CEEE---EEEECCCCCCCC-------CCCCHHHHHHHHHHHHHHHHHCCCC--EEEECC------------
T ss_conf             ---------5479---851044043068-------7521789999999999999971996--899788------------


Q ss_pred             CCH-HHHHHHHHH------CCCEEEEE
Q ss_conf             797-899999987------49819999
Q gi|255764495|r  209 FGI-QRFQKMIWH------EGADLILH  228 (309)
Q Consensus       209 ~~~-~~l~~~l~~------~~v~lvl~  228 (309)
                       ++ +++.++|.+      ..+..|||
T Consensus       140 -dA~~d~~~iL~~~y~~~~~~~~g~~H  165 (269)
T TIGR00010       140 -DAEEDVLDILREYYAEKAPKVGGVLH  165 (269)
T ss_pred             -CHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf             -45799999999998427877875798


No 80 
>KOG0373 consensus
Probab=69.99  E-value=7.3  Score=17.92  Aligned_cols=47  Identities=19%  Similarity=0.203  Sum_probs=28.4

Q ss_pred             CCC-EEEECCCCCCCCC--HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf             997-9999374444899--899999999998618997189994588422220
Q gi|255764495|r   64 NVD-HVSITGDIVNFTC--NREIFTSTHWLRSIGNPHDISIVPGNHDAYISG  112 (309)
Q Consensus        64 ~pD-~vvitGDl~~~~~--~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~  112 (309)
                      -|| --++.||.+++|-  .+.+..+.-+  .+.-|..+..+.|||+...-.
T Consensus        71 vP~tnYiFmGDfVDRGyySLEtfT~l~~L--karyP~~ITLlRGNHEsRqit  120 (306)
T KOG0373          71 VPDTNYIFMGDFVDRGYYSLETFTLLLLL--KARYPAKITLLRGNHESRQIT  120 (306)
T ss_pred             CCCCCEEEECCCCCCCCCCHHHHHHHHHH--HHCCCCEEEEEECCCHHHHHH
T ss_conf             99864687412213562008999999999--703886057861563133135


No 81 
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274   Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC).   Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain.   Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains .    This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=69.65  E-value=6.1  Score=18.46  Aligned_cols=20  Identities=25%  Similarity=0.164  Sum_probs=11.9

Q ss_pred             HHHHHHHCCC-CEEEECCCCC
Q ss_conf             9999962699-7999937444
Q gi|255764495|r   56 LINDILLHNV-DHVSITGDIV   75 (309)
Q Consensus        56 ~~~~i~~~~p-D~vvitGDl~   75 (309)
                      |++.|++.+. -++|.++++.
T Consensus       124 Lv~~iR~~G~m~g~I~~~~~~  144 (383)
T TIGR01368       124 LVKKIREKGTMKGVISTEDSN  144 (383)
T ss_pred             HHHHHHHCCCEEEEEEECCCC
T ss_conf             999986358547899606767


No 82 
>PRK10116 universal stress protein UspC; Provisional
Probab=68.23  E-value=8  Score=17.68  Aligned_cols=37  Identities=3%  Similarity=0.076  Sum_probs=23.0

Q ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             99993744448998999999999986189971899945
Q gi|255764495|r   67 HVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPG  104 (309)
Q Consensus        67 ~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~G  104 (309)
                      -|+++=|++.. +..-.+.|.++-+......-+..|..
T Consensus         5 hILVAvDlS~~-S~~~i~kA~~lA~~~~AklslihV~~   41 (142)
T PRK10116          5 NILVAVAVTPE-SQQLLAKAVSIARPVNGKISLITLAS   41 (142)
T ss_pred             EEEEEECCCHH-HHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf             89999418850-69999999999998199899999935


No 83 
>PRK05421 hypothetical protein; Provisional
Probab=67.62  E-value=8.2  Score=17.60  Aligned_cols=53  Identities=8%  Similarity=0.038  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             9999999999852433697089998376888764311012797899999987498199998767
Q gi|255764495|r  169 QEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTH  232 (309)
Q Consensus       169 ~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H  232 (309)
                      .+|++.+.+.++..+   .++|+..-.+     ++...+   ...+.+.+.+.+..-+..--.|
T Consensus       158 ~~QL~~l~~~i~~H~---GPvI~AGDFN-----tWs~~R---~~~l~~~~~~~gL~ev~f~~d~  210 (254)
T PRK05421        158 SKQLEPIGDQIAHHS---GPIILAGDFN-----TWSRKR---MNALKRFARELGLKEVRFTDDQ  210 (254)
T ss_pred             HHHHHHHHHHHHHCC---CCEEEECCCC-----CCCHHH---HHHHHHHHHHCCCCEEECCCCC
T ss_conf             999999999998489---9879844533-----013999---9999999997698087537677


No 84 
>TIGR02961 allantoicase allantoicase; InterPro: IPR005164   Allantoicase (also known as allantoate amidinohydrolase) is involved in purine degradation, facilitating the utilization of purines as secondary nitrogen sources under nitrogen-limiting conditions. While purine degradation converges to uric acid in all vertebrates, its further degradation varies from species to species. Uric acid is excreted by birds, reptiles, and some mammals that do not have a functional uricase gene, whereas other mammals produce allantoin. Amphibians and microorganisms produce ammonia and carbon dioxide using the uricolytic pathway. Allantoicase performs the second step in this pathway catalyzing the conversion of allantoate into ureidoglycolate and urea.    allantoate + H(2)0 = (S)-ureidoglycolate + urea   The structure of allantoicase is best described as being composed of two repeats (the allantoicase repeats: AR1 and AR2), which are connected by a flexible linker. The crystal structure, resolved at 2.4A resolution, reveals that AR1 has a very similar fold to AR2, both repeats being jelly-roll motifs, composed of four-stranded and five-stranded antiparallel beta-sheets . Each jelly-roll motif has two conserved surface patches that probably constitute the active site . ; GO: 0004037 allantoicase activity.
Probab=65.76  E-value=6.3  Score=18.33  Aligned_cols=16  Identities=13%  Similarity=-0.172  Sum_probs=7.8

Q ss_pred             EECCCCEEEEEEEEEE
Q ss_conf             9538983899999951
Q gi|255764495|r  272 IEKKNEYWTLEGKRYT  287 (309)
Q Consensus       272 i~~~~~~~~v~~~r~~  287 (309)
                      |.|||+-.|++++-..
T Consensus       178 iyPDGGiARLRVYG~~  193 (376)
T TIGR02961       178 IYPDGGIARLRVYGEV  193 (376)
T ss_pred             ECCCCCEEEEEEEEEE
T ss_conf             4599846878984121


No 85 
>TIGR00504 pyro_pdase pyrrolidone-carboxylate peptidase; InterPro: IPR000816   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad .    This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens.    Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins , . PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis . The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies , .; GO: 0004219 pyroglutamyl-peptidase I activity, 0006508 proteolysis.
Probab=65.45  E-value=7.2  Score=17.96  Aligned_cols=29  Identities=24%  Similarity=-0.026  Sum_probs=22.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             33089999999999626997999937444
Q gi|255764495|r   47 YFSKEVANLLINDILLHNVDHVSITGDIV   75 (309)
Q Consensus        47 ~~~~~~l~~~~~~i~~~~pD~vvitGDl~   75 (309)
                      ..+...+|.+.+.|.+.+||+||.+|--=
T Consensus        43 ~~F~~A~~~l~~~i~~~~P~~vI~~G~~P   71 (220)
T TIGR00504        43 VAFKEALEALRQAIDEVEPDIVIALGLAP   71 (220)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             25799999999999850954488515767


No 86 
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=61.22  E-value=11  Score=16.83  Aligned_cols=63  Identities=16%  Similarity=0.221  Sum_probs=36.3

Q ss_pred             CEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC-C-CCC-CCHHHHHHHHHHCCCEEEEECCCCCCE
Q ss_conf             6008999999999985243369708999837688876431-1-012-797899999987498199998767532
Q gi|255764495|r  165 GYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSL-Y-NRM-FGIQRFQKMIWHEGADLILHGHTHLNS  235 (309)
Q Consensus       165 g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~-~-~~~-~~~~~l~~~l~~~~v~lvl~GH~H~~~  235 (309)
                      |-+.+++++|+.+.        .+.|+++-.||....... . +.+ .....+..++++.+..+|+-=|.=+.-
T Consensus       187 Gp~~~~~l~~i~e~--------~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~lViDHHllRD~  252 (304)
T COG2248         187 GPINDEALEFILEK--------RPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATLVIDHHLLRDK  252 (304)
T ss_pred             CCCCCHHHHHHHHC--------CCCEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHCCC
T ss_conf             88860888999851--------8988996698266766550767799999899999970766499852023177


No 87 
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria.  The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=60.75  E-value=11  Score=16.78  Aligned_cols=52  Identities=23%  Similarity=0.341  Sum_probs=29.6

Q ss_pred             HHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf             999998524336970899983768887643110127978999999874981999987675
Q gi|255764495|r  174 ATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHL  233 (309)
Q Consensus       174 ~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~  233 (309)
                      .+++.+.    .|...+++..++.+.......    -+..+.+++++.+.++||+||+-.
T Consensus        51 ~l~~~~a----~GaD~v~~v~~~~~~~~~~~~----~a~~la~~i~~~~~dlVl~g~~s~  102 (181)
T cd01985          51 ALREALA----MGADKVLLVEDPALAGYDPEA----TAKALAALIKKEKPDLILAGATSI  102 (181)
T ss_pred             HHHHHHH----CCCCEEEEECCCCCCCCCHHH----HHHHHHHHHHHCCCCEEEECCCHH
T ss_conf             9999977----289789998167445768899----999999999860998999604102


No 88 
>KOG0376 consensus
Probab=59.64  E-value=11  Score=16.65  Aligned_cols=189  Identities=12%  Similarity=0.067  Sum_probs=82.7

Q ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHH--------HHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             999937444489989999999999861899718999458842222035--------676643245431344444555621
Q gi|255764495|r   67 HVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAK--------EKSLHAWKDYITSDTTCSTGKKLF  138 (309)
Q Consensus        67 ~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  138 (309)
                      --+..||+++.++...-..+..+...+..|-.+|...|||+.......        .++.......+.    ..+...+.
T Consensus       244 ~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~~~~~f~----~~f~~LPl  319 (476)
T KOG0376         244 PYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEEMFNLFS----EVFIWLPL  319 (476)
T ss_pred             CCCCCCCEEEECCCCEEEEEEEHHHCCCCCCCEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH----HHHCCCCC
T ss_conf             54456750121011000122200002247763641247742067999858876402446788777666----65301562


Q ss_pred             EEEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC----CCC----CCCC
Q ss_conf             27997198799983288888875547600899999999998524336970899983768887643----110----1279
Q gi|255764495|r  139 PYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSS----LYN----RMFG  210 (309)
Q Consensus       139 ~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~----~~~----~~~~  210 (309)
                      +. .+...+.++  .   ...  .......-..+..+.+. ++.++    -..+++-+...+...    .+.    -..+
T Consensus       320 ~~-~i~~~~~~~--h---ggl--f~~~~v~l~d~r~i~r~-~~~~~----~~~~~~~lws~pq~~~g~s~S~r~~g~~fG  386 (476)
T KOG0376         320 AH-LINNKVLVM--H---GGL--FSPDGVTLEDFRNIDRF-EQPPE----EGLMCELLWSDPQPANGRSPSKRGVGLQFG  386 (476)
T ss_pred             HH-HHCCCEEEE--E---CCC--CCCCCCCHHHHHHHHHC-CCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf             53-306716888--4---675--78888528998743301-28952----122001366797645688866457424337


Q ss_pred             HHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf             7899999987498199998767532478716998689999576235778888778548999953898
Q gi|255764495|r  211 IQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKNE  277 (309)
Q Consensus       211 ~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~~  277 (309)
                      .+.-...+...+.+.++-+|--...-..++-.+.-+.++++|.-+.+..     +-+..|.++++..
T Consensus       387 ~d~t~~f~~~n~l~~i~rshe~~d~gy~~eh~g~l~tvfsapnycd~~~-----n~ga~i~~~~~~~  448 (476)
T KOG0376         387 PDVTERFLQDNNLDKIIRSHEVKDEGYEVEHSGKLITVFSAPNYCDQMG-----NKGAFIHLEPDDL  448 (476)
T ss_pred             CCCHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCEEEEECCCCHHHHCC-----CCCEEEEECCCCC
T ss_conf             8711667765366777632446777534520786787744762222038-----8513899627888


No 89 
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=57.74  E-value=10  Score=17.03  Aligned_cols=27  Identities=22%  Similarity=0.203  Sum_probs=21.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             330899999999996269979999374
Q gi|255764495|r   47 YFSKEVANLLINDILLHNVDHVSITGD   73 (309)
Q Consensus        47 ~~~~~~l~~~~~~i~~~~pD~vvitGD   73 (309)
                      ..-...++.+-+.+++.+||.+||-||
T Consensus        69 a~c~~ald~l~~~i~~akpDV~VIvGn   95 (328)
T cd07366          69 ARCQAALDRLADFIRAARIDVAVIVGD   95 (328)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             899999999999999758988999818


No 90 
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=56.87  E-value=9.8  Score=17.10  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=21.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             30899999999996269979999374
Q gi|255764495|r   48 FSKEVANLLINDILLHNVDHVSITGD   73 (309)
Q Consensus        48 ~~~~~l~~~~~~i~~~~pD~vvitGD   73 (309)
                      .-.+.++.+-+.+++.+||.+||-||
T Consensus        72 ~c~~ald~la~~ia~akpDV~VIvGn   97 (335)
T PRK13363         72 QCEAAIDQLRDRIRAARLDVAVIVGN   97 (335)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             99999999999999758998999807


No 91 
>pfam02350 Epimerase_2 UDP-N-acetylglucosamine 2-epimerase. This family consists of UDP-N-acetylglucosamine 2-epimerases EC:5.1.3.14 this enzyme catalyses the production of UDP-ManNAc from UDP-GlcNAc. Note that some of the enzymes is this family are bifunctional, in this instance Pfam matches only the N-terminal half of the protein suggesting that the additional C-terminal part (when compared to mono-functional members of this family) is responsible for the UPD-N-acetylmannosamine kinase activity of these enzymes. This hypothesis is further supported by the assumption that the C-terminal part of rat bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase is the kinase domain.
Probab=55.31  E-value=13  Score=16.19  Aligned_cols=48  Identities=13%  Similarity=-0.017  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             89999999999626997999937444489989999999999861899718999458
Q gi|255764495|r   50 KEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGN  105 (309)
Q Consensus        50 ~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GN  105 (309)
                      ...+..+-+.+.+.+||+|++.||-..     .+..+...   ....+|+..+-|-
T Consensus        53 ~~~i~~~~~~l~~~~PD~vlv~GDr~e-----~la~aiaa---~~~~ipi~HiegG  100 (346)
T pfam02350        53 GRILIGLEDVLEEEKPDLVLVLGDTNE-----TLAGALAA---FYLRIPVAHVEAG  100 (346)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCCH-----HHHHHHHH---HHHCCCEEEEECC
T ss_conf             999999999999829999999689715-----88999999---9819848995268


No 92 
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase; InterPro: IPR013375   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .    Many archaeal species lack cysteinyl-tRNA synthetase, an essential enzyme that provides Cys-tRNA(Cys) in other organisms. Instead, in a two step pathway, tRNA-Cys is acylated with O-phosphoserine (Sep) to form Sep-tRNA(Cys), which is subsequently converted to Cys-tRNA(Cys) . This pathway is also thought to function as the sole route of cysteine biosynthesis in these organisms. Several other archaeal species use both this pathway and direct tRNA(Cys) aminoacylation to synthesize Cys-tRNA(Cys), but this pathway appears to be the only route for cysteine biosynthesis. Proteins in this entry catalyse the second step in this pathway using pyridoxal phosphate and a sulphur donor to synthesize Cys from Sep while attached to the tRNA..
Probab=54.81  E-value=14  Score=16.14  Aligned_cols=50  Identities=12%  Similarity=0.278  Sum_probs=33.4

Q ss_pred             HHHHHHHHCCCC---CCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEC
Q ss_conf             999998524336---97089998376888764311012797899999987498199998
Q gi|255764495|r  174 ATSKLLRKANKK---GFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHG  229 (309)
Q Consensus       174 ~l~~~L~~~~~~---~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~G  229 (309)
                      -.++.+++..++   +...++++| +     +....++.||..+.++..+++|-++|+|
T Consensus       133 ~Y~~viee~~d~~G~~~~LallTh-v-----DG~YGNL~DA~kva~vc~~~gvPlLLNC  185 (381)
T TIGR02539       133 GYKEVIEEVEDESGKPVALALLTH-V-----DGEYGNLADAKKVAKVCREKGVPLLLNC  185 (381)
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEEE-C-----CCCCCCCHHHHHHHHHHHHCCCCEEECC
T ss_conf             788888655202798834899840-2-----6886751124568766542078622124


No 93 
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704   At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=54.80  E-value=14  Score=16.14  Aligned_cols=45  Identities=7%  Similarity=0.210  Sum_probs=23.7

Q ss_pred             HHHHHHHHHC---CCEEEEECCC-----------CCCEEEEEE----CCCCCEEEEEECCCCC
Q ss_conf             8999999874---9819999876-----------753247871----6998689999576235
Q gi|255764495|r  212 QRFQKMIWHE---GADLILHGHT-----------HLNSLHWIK----NEKKLIPVVGIASASQ  256 (309)
Q Consensus       212 ~~l~~~l~~~---~v~lvl~GH~-----------H~~~~~~~~----~~~~~~~~~~~~s~~~  256 (309)
                      +++++++..|   ....++.|=+           |+.+....+    ....+...|+||+...
T Consensus       329 e~VR~~v~lYArs~atVLi~GE~GTGKElvAq~~H~EY~~R~~~~~~r~~~pFVAiNCGAi~E  391 (658)
T TIGR02329       329 EQVRALVRLYARSAATVLIEGESGTGKELVAQAIHREYALRYDQLSGRRDRPFVAINCGAIAE  391 (658)
T ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHH
T ss_conf             899999985268865067514777228999999759998746665013378846874746568


No 94 
>pfam01026 TatD_DNase TatD related DNase. This family of proteins are related to a large superfamily of metalloenzymes. TatD, a member of this family has been shown experimentally to be a DNase enzyme.
Probab=54.46  E-value=14  Score=16.10  Aligned_cols=131  Identities=16%  Similarity=0.164  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99999999626997999937444489989999999999861899718999458842222035676643245431344444
Q gi|255764495|r   53 ANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCS  132 (309)
Q Consensus        53 l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~  132 (309)
                      ++.+++.+.+.+...+++.|--     ++++..+.++.+..  +..|+...|=|=.+..............+.....   
T Consensus        16 ~~~vl~~a~~~gv~~ii~~~~~-----~~~~~~~~~la~~~--~~~v~~~~GiHP~~~~~~~~~~~~~l~~~~~~~~---   85 (255)
T pfam01026        16 RDEVIERAREAGVTAVVVVGTD-----LKDFERALELARKY--PGKVYAAVGVHPHEADEASEEVLEALEKLKLAEH---   85 (255)
T ss_pred             HHHHHHHHHHCCCCEEEEECCC-----HHHHHHHHHHHHHC--CCCEEEEECCCHHHHCCCCHHHHHHHHHHHHCCC---
T ss_conf             9999999998799989995699-----99999999999768--7667899535810115168899999999974358---


Q ss_pred             CCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHH
Q ss_conf             55562127997198799983288888875547600899999999998524336970899983768887643110127978
Q gi|255764495|r  133 TGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQ  212 (309)
Q Consensus       133 ~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~  212 (309)
                            +.+   -.+.=+|||-....      ....+.|...++++|+-+.+-+.+  ++.|-.            ...+
T Consensus        86 ------~~~---vaIGEiGLD~~~~~------~~~~~~Q~~~F~~ql~lA~~~~lP--vilH~r------------~a~~  136 (255)
T pfam01026        86 ------PKV---VAIGEIGLDYYYVD------ESPKEAQEEVFRRQLELAKELDLP--VVIHTR------------DAEE  136 (255)
T ss_pred             ------CCE---EEEEECCCCCCCCC------CCCHHHHHHHHHHHHHHHHHHCCC--EEEEEC------------CHHH
T ss_conf             ------987---99980135776579------998999999999999999870897--489845------------5399


Q ss_pred             HHHHHHHHCC
Q ss_conf             9999998749
Q gi|255764495|r  213 RFQKMIWHEG  222 (309)
Q Consensus       213 ~l~~~l~~~~  222 (309)
                      ++.++|++++
T Consensus       137 ~~~~il~~~~  146 (255)
T pfam01026       137 DLLEILKEAG  146 (255)
T ss_pred             HHHHHHHHHC
T ss_conf             9999999826


No 95 
>KOG2732 consensus
Probab=53.68  E-value=14  Score=16.02  Aligned_cols=173  Identities=13%  Similarity=0.115  Sum_probs=93.9

Q ss_pred             CCEEEECCCCCCC---------------------CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHH-HHHH
Q ss_conf             9799993744448---------------------99899999999998618997189994588422220356766-4324
Q gi|255764495|r   65 VDHVSITGDIVNF---------------------TCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSL-HAWK  122 (309)
Q Consensus        65 pD~vvitGDl~~~---------------------~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~-~~~~  122 (309)
                      .+-++++|-++..                     .+......+..++.+.....+|-+.||--|..........+ +...
T Consensus       218 i~rliv~Gn~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ld~~L~~~~~s~~VdimPG~~Dp~~~~lPqqPlh~~lf  297 (435)
T KOG2732         218 IGRLIVAGNSLSFSIKILDSQSTSISRLTKKDSAASVIPVKELDNFLAQIPASISVDIMPGVNDPSNFMLPQQPLHRCLF  297 (435)
T ss_pred             CCEEEEECCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHH
T ss_conf             53089954524503305553114665024466434423088888999734566876677888780430277677556661


Q ss_pred             HHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEE--CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
Q ss_conf             543134444455562127997198799983288888875547600--899999999998524336970899983768887
Q gi|255764495|r  123 DYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYF--GQEQAHATSKLLRKANKKGFFRIIMMHHPPVLD  200 (309)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~--~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~  200 (309)
                      +..... .......-.+|....+++++.+...    .......++  ....++.++.           .+-.-|..|..+
T Consensus       298 p~s~~~-~~~~q~vTNPy~~~ld~~~vl~tSG----qNvsDl~ry~~~~s~ld~le~-----------tlkw~HvaPTaP  361 (435)
T KOG2732         298 PKSPQS-LSTLQLVTNPYEFSLDGARVLGTSG----QNVSDLLRYSSKKSGLDALEN-----------TLKWGHVAPTAP  361 (435)
T ss_pred             CCCCCC-CCHHHCCCCCEEEEECCEEEEECCC----CCHHHHHHHCCHHHHHHHHHH-----------HHEECCCCCCCC
T ss_conf             467532-0013100475488876888970487----567888620210337889865-----------123113269999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCC
Q ss_conf             64311012797899999987498199998767532478716998689999576235
Q gi|255764495|r  201 TSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQ  256 (309)
Q Consensus       201 ~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~  256 (309)
                      .+-+-..+.+.+-|.  +.+. .++++||-.-.-....+.+.+..+..+.+|..+.
T Consensus       362 DTL~cyPftekDPFv--~~~~-Phvy~~GNqp~f~~r~i~~~g~~~~Lv~VP~Fsk  414 (435)
T KOG2732         362 DTLWCYPFTEKDPFV--MDEC-PHVYIVGNQPKFGTRLIEGGGKNTLLVCVPKFSK  414 (435)
T ss_pred             CCCCCCCCCCCCCEE--ECCC-CEEEEECCCCCCCCEEEECCCCEEEEEECCCCCC
T ss_conf             841311034689724--3379-7089965887414504636982499998155156


No 96 
>pfam01784 NIF3 NIF3 (NGG1p interacting factor 3). This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown.
Probab=53.15  E-value=15  Score=15.96  Aligned_cols=62  Identities=15%  Similarity=0.089  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH---HHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf             89999999999626997999937444489989---999999999861899718999458842222
Q gi|255764495|r   50 KEVANLLINDILLHNVDHVSITGDIVNFTCNR---EIFTSTHWLRSIGNPHDISIVPGNHDAYIS  111 (309)
Q Consensus        50 ~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~---~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~  111 (309)
                      .+.-+.+++.+.+.+.|+|+.===++..+...   +..........+...+.+|..-=|-|....
T Consensus        39 lD~t~~vi~~A~~~~~dlIItHHPl~f~~~~~~~~~~~~~~~~~~li~~~I~vy~~Ht~lD~~~~  103 (238)
T pfam01784        39 LDATEEVIEEAIENGADLIITHHPLIFKPLKRITGDDPKGRIILKLIKNNISLYSAHTNLDAAPG  103 (238)
T ss_pred             EECCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHCCCC
T ss_conf             82999999999977999999738751168655556777899999999669669980550110685


No 97 
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=52.82  E-value=15  Score=15.93  Aligned_cols=130  Identities=8%  Similarity=0.043  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999999962699799993744448998999999999986189971899945884222203567664324543134444
Q gi|255764495|r   52 VANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTC  131 (309)
Q Consensus        52 ~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~  131 (309)
                      -++.+++.+.+.+...+++.|.     .++++..+.++.+...   .+++..|=|=.+...............+..... 
T Consensus        20 d~~~vi~~a~~~gv~~i~~~g~-----~~~~~~~~~~l~~~~~---~i~~~vGiHP~~~~~~~~~~~~~l~~~l~~~~~-   90 (258)
T PRK11449         20 DEEASLQRAAQAGVGKIIVPAT-----EAANFARVLALAERYQ---PLYAALGLHPGMLEKHSDVSLDQLQQALERRPA-   90 (258)
T ss_pred             CHHHHHHHHHHCCCCEEEEECC-----CHHHHHHHHHHHHHCC---CCEEECCCCCCHHHCCCCCCHHHHHHHHHHCCC-
T ss_conf             9999999999829999999349-----9999999999987596---301870589761110570059999999981878-


Q ss_pred             CCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCH
Q ss_conf             45556212799719879998328888887554760089999999999852433697089998376888764311012797
Q gi|255764495|r  132 STGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGI  211 (309)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~  211 (309)
                              .+.   .+.=+|||-....       .-.+.|...++++++-+.+-+.+  ++.|--            ...
T Consensus        91 --------~vv---aIGEiGLDy~~~~-------~~~~~Q~~~F~~ql~lA~~~~lP--vviH~R------------~A~  138 (258)
T PRK11449         91 --------KVV---AVGEIGLDLFGDD-------PQFERQQWLLDEQLKLAKRYDLP--VILHSR------------RTH  138 (258)
T ss_pred             --------CEE---EEECCCCCCCCCC-------CHHHHHHHHHHHHHHHHHHHCCC--EEEECH------------HHH
T ss_conf             --------789---9834564778899-------86999999999999999984997--598622------------137


Q ss_pred             HHHHHHHHHCC
Q ss_conf             89999998749
Q gi|255764495|r  212 QRFQKMIWHEG  222 (309)
Q Consensus       212 ~~l~~~l~~~~  222 (309)
                      +.+..+|.+++
T Consensus       139 ~~~~~~l~~~~  149 (258)
T PRK11449        139 DKLAMHLKRHD  149 (258)
T ss_pred             HHHHHHHHHCC
T ss_conf             99999998558


No 98 
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase; InterPro: IPR004607   This family describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins found in formyltransferase. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a different GAR transformylase, uses ATP and formate rather than formyl tetrahydrofolate. Experimental proof includes complementation of Escherichia coli purN mutants by orthologs from vertebrates (where it is a domain of a multifunctional protein), Bacillus subtilis, and Arabidopsis thaliana. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup. ; GO: 0004644 phosphoribosylglycinamide formyltransferase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=51.42  E-value=15  Score=15.97  Aligned_cols=14  Identities=21%  Similarity=0.318  Sum_probs=7.3

Q ss_pred             HHHHHHHHHH--CCCC
Q ss_conf             9999999962--6997
Q gi|255764495|r   53 ANLLINDILL--HNVD   66 (309)
Q Consensus        53 l~~~~~~i~~--~~pD   66 (309)
                      |+++++++++  .+.|
T Consensus        14 LqAiiDA~~~~~~~~~   29 (215)
T TIGR00639        14 LQAIIDAIKEGQGKID   29 (215)
T ss_pred             HHHHHHHHHHCCCCCC
T ss_conf             9999999852127867


No 99 
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=50.50  E-value=16  Score=15.70  Aligned_cols=11  Identities=36%  Similarity=0.271  Sum_probs=5.1

Q ss_pred             CCEEEECCCCC
Q ss_conf             97999937444
Q gi|255764495|r   65 VDHVSITGDIV   75 (309)
Q Consensus        65 pD~vvitGDl~   75 (309)
                      .|+|+.+|-..
T Consensus        59 ~DlIIttGG~s   69 (133)
T cd00758          59 ADLVLTTGGTG   69 (133)
T ss_pred             CCEEEECCCCC
T ss_conf             99999938866


No 100
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=50.39  E-value=16  Score=15.68  Aligned_cols=25  Identities=16%  Similarity=0.008  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             9999999999626997999937444
Q gi|255764495|r   51 EVANLLINDILLHNVDHVSITGDIV   75 (309)
Q Consensus        51 ~~l~~~~~~i~~~~pD~vvitGDl~   75 (309)
                      ..+..+-+.+.+++||+|++-||-.
T Consensus        80 ~~~~~~~~~l~~~kPD~VlV~GDt~  104 (365)
T TIGR03568        80 LTIIGFSDAFERLKPDLVVVLGDRF  104 (365)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             9999999998543998999948986


No 101
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=49.91  E-value=16  Score=15.64  Aligned_cols=28  Identities=18%  Similarity=0.159  Sum_probs=21.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             3089999999999626997999937444
Q gi|255764495|r   48 FSKEVANLLINDILLHNVDHVSITGDIV   75 (309)
Q Consensus        48 ~~~~~l~~~~~~i~~~~pD~vvitGDl~   75 (309)
                      ....++..+-+.+.+++||.|++-||-+
T Consensus        76 ~t~~~i~~~~~vl~~~kPD~VlVhGDT~  103 (383)
T COG0381          76 ITGNIIEGLSKVLEEEKPDLVLVHGDTN  103 (383)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             9999999999999862999899917853


No 102
>KOG0375 consensus
Probab=48.16  E-value=16  Score=15.77  Aligned_cols=19  Identities=26%  Similarity=0.538  Sum_probs=13.2

Q ss_pred             HHCCCCCEEEEECCCCCCC
Q ss_conf             6189971899945884222
Q gi|255764495|r   92 SIGNPHDISIVPGNHDAYI  110 (309)
Q Consensus        92 ~l~~~~~v~~v~GNHD~~~  110 (309)
                      .+.-|...+...|||+...
T Consensus       142 Ki~yp~tl~lLRGNHECrH  160 (517)
T KOG0375         142 KINYPKTLFLLRGNHECRH  160 (517)
T ss_pred             HCCCCCEEEEECCCCCHHH
T ss_conf             6078770687507720011


No 103
>pfam07819 PGAP1 PGAP1-like protein. The sequences found in this family are similar to PGAP1. This is an endoplasmic reticulum membrane protein with a catalytic serine containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body.
Probab=46.64  E-value=18  Score=15.31  Aligned_cols=16  Identities=25%  Similarity=0.534  Sum_probs=12.5

Q ss_pred             CCCCEEEEECCCCCCC
Q ss_conf             9971899945884222
Q gi|255764495|r   95 NPHDISIVPGNHDAYI  110 (309)
Q Consensus        95 ~~~~v~~v~GNHD~~~  110 (309)
                      ...||.+||||.=.|.
T Consensus         3 ~GiPVLFIPGNaGSyk   18 (225)
T pfam07819         3 SGIPVLFIPGNAGSYK   18 (225)
T ss_pred             CCCEEEEECCCCCCHH
T ss_conf             8860898689988678


No 104
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=46.64  E-value=18  Score=15.31  Aligned_cols=45  Identities=18%  Similarity=0.199  Sum_probs=24.1

Q ss_pred             HHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             999852433697089998376888764311012797899999987
Q gi|255764495|r  176 SKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWH  220 (309)
Q Consensus       176 ~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~  220 (309)
                      .+.|+.++.+.++.+|..|.|-.......-....-.+.+.+.+.+
T Consensus         7 ~qAL~~Ak~e~KfLlVYLhs~~h~dt~~F~r~~L~~~~vv~~in~   51 (116)
T cd02991           7 SQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT   51 (116)
T ss_pred             HHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999998385899998179998888999986388999999750


No 105
>PRK13670 hypothetical protein; Provisional
Probab=46.44  E-value=18  Score=15.29  Aligned_cols=27  Identities=15%  Similarity=0.158  Sum_probs=16.9

Q ss_pred             HHHHHHC-CCC--EEEECCCCCCCCCHHHH
Q ss_conf             9999626-997--99993744448998999
Q gi|255764495|r   57 INDILLH-NVD--HVSITGDIVNFTCNREI   83 (309)
Q Consensus        57 ~~~i~~~-~pD--~vvitGDl~~~~~~~~~   83 (309)
                      ++.+++. ++|  .+|.+|+.+++|.|+-+
T Consensus        21 i~~ar~~t~ad~iIaVMSGnFvQRGEPAi~   50 (390)
T PRK13670         21 LNQAKKLTKADVTIAVMSGNFVQRGEPAIV   50 (390)
T ss_pred             HHHHHHHCCCCEEEEEECCCCCCCCCCHHC
T ss_conf             999997539987999943885108872007


No 106
>PRK13671 hypothetical protein; Provisional
Probab=46.34  E-value=18  Score=15.28  Aligned_cols=32  Identities=13%  Similarity=0.001  Sum_probs=19.2

Q ss_pred             HHHHHHC-CCCE--EEECCCCCCCCCHHHHHHHHH
Q ss_conf             9999626-9979--999374444899899999999
Q gi|255764495|r   57 INDILLH-NVDH--VSITGDIVNFTCNREIFTSTH   88 (309)
Q Consensus        57 ~~~i~~~-~pD~--vvitGDl~~~~~~~~~~~~~~   88 (309)
                      ++.+++. ++|.  +|.+||.+++|.|+-++...+
T Consensus        20 i~qar~~~~ad~iIavMSGnFvQRGEPAi~dKw~R   54 (298)
T PRK13671         20 INYIKNKFPNEKIIIILSGKYTQRGEIAVASFEKR   54 (298)
T ss_pred             HHHHHHHCCCCEEEEEECCCCCCCCCCHHCCHHHH
T ss_conf             99999865998599994588520886111788899


No 107
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=45.46  E-value=19  Score=15.19  Aligned_cols=59  Identities=19%  Similarity=0.191  Sum_probs=31.9

Q ss_pred             CCHHHHHHHHHHHHH---CCCCEEEE--CCCCCCCC--CHHHH----HHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             308999999999962---69979999--37444489--98999----999999986189971899945884
Q gi|255764495|r   48 FSKEVANLLINDILL---HNVDHVSI--TGDIVNFT--CNREI----FTSTHWLRSIGNPHDISIVPGNHD  107 (309)
Q Consensus        48 ~~~~~l~~~~~~i~~---~~pD~vvi--tGDl~~~~--~~~~~----~~~~~~~~~l~~~~~v~~v~GNHD  107 (309)
                      ...++++..++++.+   -+.|.|++  =||.-...  .++..    ....+..+....|..| -|.=|--
T Consensus        28 ~~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGv-NVLrNd~   97 (263)
T COG0434          28 SLEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGV-NVLRNDA   97 (263)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE-EEECCCC
T ss_conf             879999999989999984897689971357887777797478899999999998750766103-2102662


No 108
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=43.15  E-value=21  Score=14.96  Aligned_cols=52  Identities=13%  Similarity=0.181  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             99999999626997999937444489989999999999861899718999458842
Q gi|255764495|r   53 ANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDA  108 (309)
Q Consensus        53 l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~  108 (309)
                      -+.+++.+.+.+||.|.+|.=.+..  ......+.+.++.....  +.++.|.+=.
T Consensus        39 ~e~~v~~~~~~~~dvVgiS~~~~~~--~~~~~~~~~~~~~~~~~--v~vv~GG~~~   90 (125)
T cd02065          39 PEEIVEAAKEEDADVVGLSALSTTH--MEAMKLVIEALKELGID--IPVVVGGAHP   90 (125)
T ss_pred             HHHHHHHHHHHCCCEEEEECCHHHH--HHHHHHHHHHHHHCCCC--CEEEECCCCC
T ss_conf             9999999986089999985211301--89999999999967998--7599758879


No 109
>pfam03437 BtpA BtpA family. The BtpA protein is tightly associated with the thylakoid membranes, where it stabilizes the reaction centre proteins of photosystem I.
Probab=42.23  E-value=21  Score=14.87  Aligned_cols=72  Identities=19%  Similarity=0.168  Sum_probs=37.5

Q ss_pred             EECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH---CCCCEEEE--CCCCCC--CCCHHHHHHHH
Q ss_conf             411142788541000222100012100000123308999999999962---69979999--374444--89989999999
Q gi|255764495|r   15 ISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILL---HNVDHVSI--TGDIVN--FTCNREIFTST   87 (309)
Q Consensus        15 lSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~---~~pD~vvi--tGDl~~--~~~~~~~~~~~   87 (309)
                      |.=+||.+.|....                ..-....+++.+++++..   -+.|.|++  -||+-.  .-.++......
T Consensus         6 IGMvHL~pLPGsP~----------------~~~~~~~iie~A~~ea~~l~~~GvDgvivEN~~D~Py~~~~~~etvaamt   69 (254)
T pfam03437         6 IGVVHLLPLPGSPG----------------YKANLDAVIDKAVSDAMALEEGGFDAVILENYGDAPYLKTVGPETVAAMT   69 (254)
T ss_pred             EEEECCCCCCCCCC----------------CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf             99983799998988----------------89999999999999999999779988998068997774677669899999


Q ss_pred             ----HHHHHHCCCCCEEEE
Q ss_conf             ----999861899718999
Q gi|255764495|r   88 ----HWLRSIGNPHDISIV  102 (309)
Q Consensus        88 ----~~~~~l~~~~~v~~v  102 (309)
                          +.-+.+..|+.|-+.
T Consensus        70 ~i~~~v~~~~~iP~GvnvL   88 (254)
T pfam03437        70 VIAGEVKSDVSIPLGINVL   88 (254)
T ss_pred             HHHHHHHHHCCCCEEEEEE
T ss_conf             9999998744887367776


No 110
>PRK10834 hypothetical protein; Provisional
Probab=42.16  E-value=21  Score=14.86  Aligned_cols=54  Identities=17%  Similarity=0.061  Sum_probs=34.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             0012330899999999996269979999374444899899999999998618997
Q gi|255764495|r   43 NRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPH   97 (309)
Q Consensus        43 ~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~   97 (309)
                      ++...+....+++.++.-++-+.+.++++||-...+-.+- ...++.+.+-+.|.
T Consensus        60 G~pn~~~~~RldaA~~LY~~GKv~~iLvSGDn~~~~YnEp-~~Mk~~Li~~GVP~  113 (239)
T PRK10834         60 GVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEP-MTMRKDLIAAGVDP  113 (239)
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHCCCCH
T ss_conf             9819899999999999998699748986689998889828-99999999859989


No 111
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=41.54  E-value=22  Score=14.80  Aligned_cols=138  Identities=14%  Similarity=0.147  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             99999999626997999937444489989999999999861899718999458842222035676643245431344444
Q gi|255764495|r   53 ANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCS  132 (309)
Q Consensus        53 l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~  132 (309)
                      .+.+++.+.+.+...++++|.-     .+.+..+.++.+...   .+|...|=|=.......+........+...     
T Consensus        19 ~~~vi~~a~~~gv~~~~~~g~~-----~~~~~~~~~la~~y~---~v~~~~G~HP~~~~~~~~~~~~~l~~~~~~-----   85 (256)
T COG0084          19 RDEVIARAREAGVKKMVVVGTD-----LEDFKRALELAEKYP---NVYAAVGVHPLDADEHSEEDLEELEQLAEH-----   85 (256)
T ss_pred             HHHHHHHHHHCCCCEEEEEECC-----HHHHHHHHHHHHHCC---CEEEEEEECCCCCCCCCHHHHHHHHHHHHC-----
T ss_conf             9999999998599379996158-----888899999998689---868998668873333678899999998721-----


Q ss_pred             CCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHH
Q ss_conf             55562127997198799983288888875547600899999999998524336970899983768887643110127978
Q gi|255764495|r  133 TGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQ  212 (309)
Q Consensus       133 ~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~  212 (309)
                           .+.+.   .+.=+|||-.+...+      -.+.|...++++|+-++.-+.+  ++.|-.            .-.+
T Consensus        86 -----~~~vv---aIGEiGLDy~~~~~~------~~~~Q~~~F~~ql~lA~~~~lP--viIH~R------------~A~~  137 (256)
T COG0084          86 -----HPKVV---AIGEIGLDYYWDKEP------DKERQEEVFEAQLELAKELNLP--VIIHTR------------DAHE  137 (256)
T ss_pred             -----CCCEE---EEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHCCCC--EEEECC------------CCHH
T ss_conf             -----89858---998334685656664------4789999999999999973997--799867------------4279


Q ss_pred             HHHHHHHHCC--CEEEEECCC
Q ss_conf             9999998749--819999876
Q gi|255764495|r  213 RFQKMIWHEG--ADLILHGHT  231 (309)
Q Consensus       213 ~l~~~l~~~~--v~lvl~GH~  231 (309)
                      .+.++|++.+  ...|+|.-+
T Consensus       138 d~~~iL~~~~~~~~gi~HcFs  158 (256)
T COG0084         138 DTLEILKEEGAPVGGVLHCFS  158 (256)
T ss_pred             HHHHHHHHCCCCCCEEEECCC
T ss_conf             999999864878888998378


No 112
>COG3931 Predicted N-formylglutamate amidohydrolase [Amino acid transport and metabolism]
Probab=40.92  E-value=14  Score=16.13  Aligned_cols=19  Identities=26%  Similarity=0.490  Sum_probs=12.4

Q ss_pred             CEEEEECCCCCCCCCHHHH
Q ss_conf             1899945884222203567
Q gi|255764495|r   98 DISIVPGNHDAYISGAKEK  116 (309)
Q Consensus        98 ~v~~v~GNHD~~~~~~~~~  116 (309)
                      .++.|||||+........+
T Consensus       101 e~~~VPgN~~ls~~ER~~R  119 (263)
T COG3931         101 EGTVVPGNHPLSEEERRAR  119 (263)
T ss_pred             CCEECCCCCCCCHHHHHHH
T ss_conf             5532568898899999988


No 113
>TIGR00633 xth exodeoxyribonuclease III (xth); InterPro: IPR004808 All proteins in this family for which functions are known are 5' AP endonucleases that function in base excision repair and the repair of abasic sites in DNA.; GO: 0004518 nuclease activity, 0006281 DNA repair.
Probab=40.21  E-value=23  Score=14.67  Aligned_cols=22  Identities=14%  Similarity=0.117  Sum_probs=16.7

Q ss_pred             CHHHHHHH--HHHHHHCCCCEEEE
Q ss_conf             08999999--99996269979999
Q gi|255764495|r   49 SKEVANLL--INDILLHNVDHVSI   70 (309)
Q Consensus        49 ~~~~l~~~--~~~i~~~~pD~vvi   70 (309)
                      ..+.+...  ++.+.+++||.|.+
T Consensus        11 lRA~~~~~sfL~~l~~~~pDvLCL   34 (279)
T TIGR00633        11 LRARLKKLSFLDWLKEENPDVLCL   34 (279)
T ss_pred             HHHHCCHHHHHHHHHHCCCCEEEE
T ss_conf             442135112888986538978762


No 114
>KOG2476 consensus
Probab=39.57  E-value=23  Score=14.61  Aligned_cols=164  Identities=10%  Similarity=0.042  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHCCC-CEEEECCCCCCCC-CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             99999999962699-7999937444489-989999999999861899718999458842222035676643245431344
Q gi|255764495|r   52 VANLLINDILLHNV-DHVSITGDIVNFT-CNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDT  129 (309)
Q Consensus        52 ~l~~~~~~i~~~~p-D~vvitGDl~~~~-~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~  129 (309)
                      +++.+-+--+..+| |++++-|+++... ..+|+....  ......|+|+|+.-+|--...            .++....
T Consensus        21 li~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~yk--ng~~~vPiptY~~g~~~~~~~------------ky~~n~~   86 (528)
T KOG2476          21 LIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYK--NGTKKVPIPTYFLGDNANETE------------KYFENSD   86 (528)
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHH--CCCCCCCEEEEEECCCCCCCC------------EECCCCC
T ss_conf             99999998633798208998325578844215789875--277567435898337888630------------0024677


Q ss_pred             CCCCCC-----CCCEEEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC--
Q ss_conf             444555-----6212799719879998328888887554760089999999999852433697089998376888764--
Q gi|255764495|r  130 TCSTGK-----KLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTS--  202 (309)
Q Consensus       130 ~~~~~~-----~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~--  202 (309)
                      +.....     +.-.......++.|.-|......  .........+..+.+...+.-.......-|++.--=|...+.  
T Consensus        87 g~Ei~~Nlt~Lg~~G~~~l~sGl~IaYLsG~e~~--~~~~~~fs~~dv~~l~~~~~~~~~~~gvDILlTseWP~~v~e~~  164 (528)
T KOG2476          87 GKEIAENLTYLGRKGTYKLASGLTIAYLSGPESS--EKGESKFSQADVDELRHRLDTQKEFKGVDILLTSEWPADVQERN  164 (528)
T ss_pred             CCCCCCCEEEECCCCEEEECCCCEEEEEECCCCC--CCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHCC
T ss_conf             7511445245415553760477179996144334--56644248878999833113223457700897157752022224


Q ss_pred             ---CCCCCCCCHHHHHHHHHHCCCEEEEECCC
Q ss_conf             ---31101279789999998749819999876
Q gi|255764495|r  203 ---SLYNRMFGIQRFQKMIWHEGADLILHGHT  231 (309)
Q Consensus       203 ---~~~~~~~~~~~l~~~l~~~~v~lvl~GH~  231 (309)
                         .......+..-+.++.++....+.++|=.
T Consensus       165 ss~~~~~~~~gs~lvs~La~~lkPRYHFa~~~  196 (528)
T KOG2476         165 SSLPESKRLCGSELVSELAAELKPRYHFAGSD  196 (528)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCEEECCCC
T ss_conf             56765567751089999997358536761478


No 115
>pfam08413 Metallophos_C Calcineurin-like phosphoesterase C-terminal. This domain is found to the C-terminus of Calcineurin-like phosphoesterase domains (pfam00149) in cAMP phosphodiesterases and the homologous Icc proteins.
Probab=39.49  E-value=23  Score=14.60  Aligned_cols=32  Identities=9%  Similarity=0.177  Sum_probs=19.8

Q ss_pred             CEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEE
Q ss_conf             6899995762357788887785489999538983899
Q gi|255764495|r  245 LIPVVGIASASQKVHSNKPQASYNLFYIEKKNEYWTL  281 (309)
Q Consensus       245 ~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~~~~~v  281 (309)
                      .+.++++||++..+.....     -+.|+....+||.
T Consensus         2 gv~~l~tPSTC~QF~p~s~-----~F~lD~~~PGyR~   33 (38)
T pfam08413         2 GVRLLATPSTCVQFKPKSP-----DFALDTLAPGYRW   33 (38)
T ss_pred             CCEEEECCCCEEEECCCCC-----CEEECCCCCCCEE
T ss_conf             9779848975365457998-----5356488984189


No 116
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=39.23  E-value=24  Score=14.57  Aligned_cols=49  Identities=14%  Similarity=0.057  Sum_probs=21.7

Q ss_pred             HHHHHHHHHCCCEEE---EECCCCCCEEEEEE--CCCCCEEEEEECCCCCCCCC
Q ss_conf             899999987498199---99876753247871--69986899995762357788
Q gi|255764495|r  212 QRFQKMIWHEGADLI---LHGHTHLNSLHWIK--NEKKLIPVVGIASASQKVHS  260 (309)
Q Consensus       212 ~~l~~~l~~~~v~lv---l~GH~H~~~~~~~~--~~~~~~~~~~~~s~~~~~~~  260 (309)
                      ..+.+-|++++..++   ++-|.-......+.  -.++...++.++|++..+.+
T Consensus       182 ~v~~~rl~~~G~~l~~~~~v~dd~~~ia~aI~~~~~~ga~lvi~tgsasvDpdD  235 (312)
T cd03522         182 PVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGASVDPDD  235 (312)
T ss_pred             HHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf             899999997498465579558989999999999986899399944875428863


No 117
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; InterPro: IPR005995   This 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (iPGAM) is a metalloenzyme found particularly in eubacteria and higher plants. It is distantly related to archaeal iPGAM (IPR004456 from INTERPRO) and distinct from the unrelated cofactor-dependent PGAM (PIRSF001490 from PIRSF). Activity has been demonstrated for proteins from a variety of organisms, including Pseudomonas syringae pv. tomato , Bacillus subtilis , Bacillus stearothermophilus , maize , castor bean , and Trypanosoma brucei . The structure of the B. stearothermophilus enzyme (PDB:1EJJ) has two domains . Residues 1-76 and 311-511 form the phosphatase domain, containing the active site residue and two metal-binding sites. This domain is similar to alkaline phosphatase (PDB:1ALK) and arylsulphatase (PDB:1AUK), which are members of the SCOP alkaline phosphatase-like superfamily, but there is meagre sequence similarity outside of the metal-binding segments. Residues 77-310 form the phosphotransferase domain, which is poorly conserved (or perhaps unrelated) in the archaeal enzymes.; GO: 0004619 phosphoglycerate mutase activity, 0006007 glucose catabolic process.
Probab=38.76  E-value=24  Score=14.52  Aligned_cols=27  Identities=22%  Similarity=0.211  Sum_probs=12.7

Q ss_pred             HHHHHHHHHCCCEEEEECCCCCCEEEEE
Q ss_conf             8999999874981999987675324787
Q gi|255764495|r  212 QRFQKMIWHEGADLILHGHTHLNSLHWI  239 (309)
Q Consensus       212 ~~l~~~l~~~~v~lvl~GH~H~~~~~~~  239 (309)
                      .++.+.+++.+..+.|.- .|.|.-...
T Consensus       435 gri~~~~~~~g~~~llTA-DHGNAE~M~  461 (529)
T TIGR01307       435 GRIVEACKKVGGTLLLTA-DHGNAEEMK  461 (529)
T ss_pred             HHHHHHHHHCCCEEEEEE-CCCCCCCCC
T ss_conf             999999974896299960-556600167


No 118
>PRK10799 putative hydrolase-oxidase; Provisional
Probab=37.24  E-value=25  Score=14.37  Aligned_cols=62  Identities=11%  Similarity=-0.043  Sum_probs=35.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHH-H-HHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             308999999999962699799993744448998999-9-9999998618997189994588422
Q gi|255764495|r   48 FSKEVANLLINDILLHNVDHVSITGDIVNFTCNREI-F-TSTHWLRSIGNPHDISIVPGNHDAY  109 (309)
Q Consensus        48 ~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~-~-~~~~~~~~l~~~~~v~~v~GNHD~~  109 (309)
                      ...+.-..+++.+.+.+.|+|+.==-++..+..... . ....+..-+...+.+|..--|=|..
T Consensus        40 ~alD~t~~vi~eAi~~~aDliitHHpl~~~~~~~~~~g~~~~rl~~Li~~~I~lya~Ht~lD~~  103 (247)
T PRK10799         40 TGVTASQALLDEAVRLQADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAH  103 (247)
T ss_pred             EEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCHHHC
T ss_conf             9956989999999985999999867400278877567837799999997896689841572224


No 119
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=36.85  E-value=26  Score=14.33  Aligned_cols=59  Identities=19%  Similarity=0.105  Sum_probs=39.3

Q ss_pred             HHCCCCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             000012330899999999996269979999-374444899899999999998618997189994
Q gi|255764495|r   41 HFNRKKYFSKEVANLLINDILLHNVDHVSI-TGDIVNFTCNREIFTSTHWLRSIGNPHDISIVP  103 (309)
Q Consensus        41 ~~~~~~~~~~~~l~~~~~~i~~~~pD~vvi-tGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~  103 (309)
                      .+.|.+....+-++++++.+++.+.|.+|| .||-++.    ....+.+.+..-.....|.-||
T Consensus       143 ~sgr~ki~t~eq~~~~~~~~~~l~LdgLVIiGGddSnT----naa~LAEyf~~~~~~t~VIGvP  202 (550)
T cd00765         143 CSGRTKIETEDQFKQAEETAKKLDLDALVVIGGDDSNT----NAALLAENFRSKGLKTRVIGVP  202 (550)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH----HHHHHHHHHHHCCCCCEEEECC
T ss_conf             68856248999999999999985998799968987348----7999999999649995599345


No 120
>pfam05636 DUF795 Protein of unknown function (DUF795). This family consists of several bacterial proteins of unknown function.
Probab=36.81  E-value=26  Score=14.33  Aligned_cols=27  Identities=19%  Similarity=0.213  Sum_probs=16.7

Q ss_pred             HHHHHH-CCCCE--EEECCCCCCCCCHHHH
Q ss_conf             999962-69979--9993744448998999
Q gi|255764495|r   57 INDILL-HNVDH--VSITGDIVNFTCNREI   83 (309)
Q Consensus        57 ~~~i~~-~~pD~--vvitGDl~~~~~~~~~   83 (309)
                      ++.+++ -++|.  +|.+|+.+++|.|+-+
T Consensus        21 i~~ar~~~~~d~iIavMSGnFvQRGEPAi~   50 (389)
T pfam05636        21 LNEAKKLTKADVKIAVMSGNFVQRGEPAII   50 (389)
T ss_pred             HHHHHHHCCCCEEEEEECCCCCCCCCCHHC
T ss_conf             999998649985999944885218862007


No 121
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase  family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=35.84  E-value=27  Score=14.23  Aligned_cols=27  Identities=22%  Similarity=0.113  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             899999999996269979999374444
Q gi|255764495|r   50 KEVANLLINDILLHNVDHVSITGDIVN   76 (309)
Q Consensus        50 ~~~l~~~~~~i~~~~pD~vvitGDl~~   76 (309)
                      ...+..+.+.+.+.+||+|++.||-+.
T Consensus        74 ~~~~~~~~~~l~~~kPD~VlV~GDr~e  100 (363)
T cd03786          74 AGLLIGLEAVLLEEKPDLVLVLGDTNE  100 (363)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf             999999999999729999999488842


No 122
>KOG1099 consensus
Probab=35.65  E-value=27  Score=14.21  Aligned_cols=11  Identities=27%  Similarity=0.546  Sum_probs=6.1

Q ss_pred             EEEECCCCCCC
Q ss_conf             99993744448
Q gi|255764495|r   67 HVSITGDIVNF   77 (309)
Q Consensus        67 ~vvitGDl~~~   77 (309)
                      .+-+-||||..
T Consensus        91 V~qlq~DIT~~  101 (294)
T KOG1099          91 VIQLQGDITSA  101 (294)
T ss_pred             EEEEECCCCCH
T ss_conf             27850455777


No 123
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=35.30  E-value=27  Score=14.17  Aligned_cols=27  Identities=15%  Similarity=-0.054  Sum_probs=20.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             308999999999962699799993744
Q gi|255764495|r   48 FSKEVANLLINDILLHNVDHVSITGDI   74 (309)
Q Consensus        48 ~~~~~l~~~~~~i~~~~pD~vvitGDl   74 (309)
                      .+....+.+.+.+.+.+||+|+..|=-
T Consensus        45 ~f~~s~~~l~~~i~~~~Pd~Vi~~GqA   71 (222)
T PRK13195         45 TFFESIAAAQQAIAEIEPALVIMLGEY   71 (222)
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf             477689999999998799999992356


No 124
>PRK09275 aspartate aminotransferase; Provisional
Probab=34.35  E-value=28  Score=14.07  Aligned_cols=49  Identities=14%  Similarity=0.235  Sum_probs=23.2

Q ss_pred             HHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf             9985243369708999837688876431101279789999998749819999
Q gi|255764495|r  177 KLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILH  228 (309)
Q Consensus       177 ~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~  228 (309)
                      +.+++.+++. ...+++= +|..+++... .-...+++.+++++.+.++++-
T Consensus       236 ~EleKL~DP~-IKAlf~V-NPsNP~S~~l-s~e~l~~i~~IV~~~nPdLmIi  284 (531)
T PRK09275        236 KELEKLRDPS-IKALFVV-NPSNPPSVAM-SDESLEKIADIVKEDRPDLMII  284 (531)
T ss_pred             HHHHHHCCCC-CEEEEEE-CCCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEE
T ss_conf             9998744977-1189998-9999866656-9999999999997429987999


No 125
>KOG0092 consensus
Probab=34.20  E-value=28  Score=14.06  Aligned_cols=42  Identities=14%  Similarity=0.391  Sum_probs=27.4

Q ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCC---CCCEEEEECCCC
Q ss_conf             699799993744448998999999999986189---971899945884
Q gi|255764495|r   63 HNVDHVSITGDIVNFTCNREIFTSTHWLRSIGN---PHDISIVPGNHD  107 (309)
Q Consensus        63 ~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~---~~~v~~v~GNHD  107 (309)
                      .++++.++.=|+++   .+.|..++.|+.+|..   |--++++.||-=
T Consensus        76 RgA~AAivvYDit~---~~SF~~aK~WvkeL~~~~~~~~vialvGNK~  120 (200)
T KOG0092          76 RGANAAIVVYDITD---EESFEKAKNWVKELQRQASPNIVIALVGNKA  120 (200)
T ss_pred             CCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf             47767999985566---7899999999999986279875999832516


No 126
>cd02172 RfaE_N RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I  is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=34.12  E-value=28  Score=14.05  Aligned_cols=17  Identities=18%  Similarity=0.212  Sum_probs=9.0

Q ss_pred             HHHHHCCCEEEEECCCC
Q ss_conf             99987498199998767
Q gi|255764495|r  216 KMIWHEGADLILHGHTH  232 (309)
Q Consensus       216 ~~l~~~~v~lvl~GH~H  232 (309)
                      +++....+++++.|..-
T Consensus        81 ~~i~~~kpdi~v~G~Dy   97 (143)
T cd02172          81 ELIDALQPDIYVKGGDY   97 (143)
T ss_pred             HHHHHHCCEEEEECCCC
T ss_conf             99987198699989864


No 127
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=32.88  E-value=30  Score=13.92  Aligned_cols=50  Identities=12%  Similarity=0.049  Sum_probs=32.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCC--CCEEEECCCCCCCCCHHH--HHHHHHHHHH
Q ss_conf             0012330899999999996269--979999374444899899--9999999986
Q gi|255764495|r   43 NRKKYFSKEVANLLINDILLHN--VDHVSITGDIVNFTCNRE--IFTSTHWLRS   92 (309)
Q Consensus        43 ~~~~~~~~~~l~~~~~~i~~~~--pD~vvitGDl~~~~~~~~--~~~~~~~~~~   92 (309)
                      +...+..+..+++.++.+..++  ..-+++.|||.+.|..++  ++...+++..
T Consensus       338 dDsYNAnP~Sm~aALdtL~~~~~~~RrI~ILgDMlElG~~~~~ly~~Vg~l~~~  391 (824)
T PRK11930        338 NDSYNSDLASLDIALDFLERRKQSKKKTLILSDILQSGQSPEELYRKVAQLISS  391 (824)
T ss_pred             ECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHH
T ss_conf             566669989999999999740357856999877443287607899999999997


No 128
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=32.02  E-value=31  Score=13.83  Aligned_cols=11  Identities=9%  Similarity=0.066  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999626
Q gi|255764495|r   53 ANLLINDILLH   63 (309)
Q Consensus        53 l~~~~~~i~~~   63 (309)
                      ++++++.+...
T Consensus        15 l~aii~a~~~~   25 (200)
T PRK05647         15 LQAIIDACAAG   25 (200)
T ss_pred             HHHHHHHHHCC
T ss_conf             99999998759


No 129
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=31.76  E-value=31  Score=13.80  Aligned_cols=30  Identities=20%  Similarity=0.204  Sum_probs=12.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf             899999999998524336970899983768
Q gi|255764495|r  168 GQEQAHATSKLLRKANKKGFFRIIMMHHPP  197 (309)
Q Consensus       168 ~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp  197 (309)
                      ++....++.+.+++...++..+|++.|+|.
T Consensus       158 D~~~~~~v~~~i~~~~~~g~tiIi~tH~p~  187 (206)
T PRK13539        158 DSASQALFAELIRAHLAQGGIVIAATHIPL  187 (206)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             999999999999999958999999938988


No 130
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain; InterPro: IPR012821    Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by IPR012822 from INTERPRO..
Probab=31.39  E-value=24  Score=14.53  Aligned_cols=41  Identities=17%  Similarity=0.166  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHH----CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             8999999999962----699799993744448998999999999986189971
Q gi|255764495|r   50 KEVANLLINDILL----HNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHD   98 (309)
Q Consensus        50 ~~~l~~~~~~i~~----~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~   98 (309)
                      ...|..+++.++.    .+.-|=|.||        +..+.|...++++..|.|
T Consensus        15 ~~gLA~f~~~L~si~~~~~~gfGi~TG--------R~v~~A~~~~~k~~lP~P   59 (241)
T TIGR02471        15 DEGLAEFVELLRSITSGKAVGFGIATG--------RSVESALSVLKKLNLPSP   59 (241)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCC--------CCHHHHHHHHHHCCCCCC
T ss_conf             678999999998865054302320135--------477899999997079786


No 131
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.16  E-value=32  Score=13.74  Aligned_cols=14  Identities=14%  Similarity=0.228  Sum_probs=8.0

Q ss_pred             HHHHHHHCCCEEEE
Q ss_conf             99999874981999
Q gi|255764495|r  214 FQKMIWHEGADLIL  227 (309)
Q Consensus       214 l~~~l~~~~v~lvl  227 (309)
                      +..+++.+..++|+
T Consensus       231 v~~~~~~f~Pdlvi  244 (340)
T COG0123         231 VLPLLEEFKPDLVI  244 (340)
T ss_pred             HHHHHHHCCCCEEE
T ss_conf             89999850998899


No 132
>pfam05582 Peptidase_U57 YabG peptidase U57. YabG is a protease involved in the proteolysis and maturation of SpoIVA and YrbA proteins, conserved with the cortex and/or coat assembly by Bacillus subtilis.
Probab=30.42  E-value=33  Score=13.66  Aligned_cols=16  Identities=31%  Similarity=0.333  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHCCCC
Q ss_conf             9999999998524336
Q gi|255764495|r  170 EQAHATSKLLRKANKK  185 (309)
Q Consensus       170 ~q~~~l~~~L~~~~~~  185 (309)
                      +|-..+.+.|++.+++
T Consensus       141 eqP~~i~~Ll~~~~PD  156 (287)
T pfam05582       141 EQPEKIESLLEKYRPD  156 (287)
T ss_pred             HCHHHHHHHHHHHCCC
T ss_conf             2529999999872899


No 133
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=29.89  E-value=33  Score=13.60  Aligned_cols=60  Identities=17%  Similarity=0.150  Sum_probs=39.3

Q ss_pred             HCCCCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             00012330899999999996269979999-37444489989999999999861899718999458
Q gi|255764495|r   42 FNRKKYFSKEVANLLINDILLHNVDHVSI-TGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGN  105 (309)
Q Consensus        42 ~~~~~~~~~~~l~~~~~~i~~~~pD~vvi-tGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GN  105 (309)
                      ..|.+....+-++++++.+.+.+.|.+|+ .||-++..    ...+.+.+.+-..+..|.-||=-
T Consensus       144 s~r~ki~t~e~~~~~~~t~~~l~LdgLviiGGd~sntn----Aa~LAEyf~~~~~~t~VIGvPkT  204 (557)
T PRK07085        144 SGRTKIETEEQKEACLQTVKKLKLDGLVIIGGDDSNTN----AAILAEYFAKHNCKTQVIGVPKT  204 (557)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHH----HHHHHHHHHHHCCCEEEEECCCC
T ss_conf             68654589999999999999859987999798872163----89999999982998379933521


No 134
>pfam08497 Radical_SAM_N Radical SAM N-terminal. This domain tends to occur to the N-terminus of the pfam04055 domain in hypothetical bacterial proteins.
Probab=28.77  E-value=35  Score=13.47  Aligned_cols=48  Identities=21%  Similarity=0.369  Sum_probs=25.1

Q ss_pred             CCCCEEEECCCCC-CCCCHHHHHHHHHHHH---------------------HHCCCCCEE-EEECCCCCCCC
Q ss_conf             6997999937444-4899899999999998---------------------618997189-99458842222
Q gi|255764495|r   63 HNVDHVSITGDIV-NFTCNREIFTSTHWLR---------------------SIGNPHDIS-IVPGNHDAYIS  111 (309)
Q Consensus        63 ~~pD~vvitGDl~-~~~~~~~~~~~~~~~~---------------------~l~~~~~v~-~v~GNHD~~~~  111 (309)
                      ..+|+|++|||-. ++.+=. ......+++                     .|+.|.-++ +..||-|.+..
T Consensus        15 d~lDvilVtGDAYVDHPsFG-~AiIgR~Le~~GyrVgIIaQPdw~~~~df~~lG~PrLffgVsaGn~DSMVn   85 (298)
T pfam08497        15 DQLDVILVTGDAYVDHPSFG-MAIIGRVLEAQGFRVGIIAQPDWRSDEDFKRLGRPRLFFGVTAGNMDSMVN   85 (298)
T ss_pred             CCCCEEEEECCCCCCCCCHH-HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCEEEEECCCCHHHHHH
T ss_conf             75788999476225685306-899999999869659897189989847899729984798863664888887


No 135
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=28.68  E-value=35  Score=13.46  Aligned_cols=28  Identities=21%  Similarity=0.138  Sum_probs=22.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             3089999999999626997999937444
Q gi|255764495|r   48 FSKEVANLLINDILLHNVDHVSITGDIV   75 (309)
Q Consensus        48 ~~~~~l~~~~~~i~~~~pD~vvitGDl~   75 (309)
                      .+.+..+.+.+.+.+.+||+|+..|---
T Consensus        44 ~f~~s~~~l~~~i~~~qPd~vl~iG~A~   71 (207)
T COG2039          44 VFKKSIDALVQAIAEVQPDLVLAIGQAG   71 (207)
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             1888999999999851998699831468


No 136
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=28.40  E-value=35  Score=13.43  Aligned_cols=22  Identities=18%  Similarity=0.110  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHCCCCEEEECCC
Q ss_conf             9999999996269979999374
Q gi|255764495|r   52 VANLLINDILLHNVDHVSITGD   73 (309)
Q Consensus        52 ~l~~~~~~i~~~~pD~vvitGD   73 (309)
                      .+|.=.+.|++.+||+|++.|=
T Consensus       106 lfEPD~Eai~a~kPdLIIiggR  127 (320)
T COG4607         106 LFEPDYEAIAAAKPDLIIIGGR  127 (320)
T ss_pred             CCCCCHHHHHHCCCCEEEECCH
T ss_conf             3587889997449988997747


No 137
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=28.28  E-value=35  Score=13.42  Aligned_cols=28  Identities=7%  Similarity=-0.071  Sum_probs=20.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             3089999999999626997999937444
Q gi|255764495|r   48 FSKEVANLLINDILLHNVDHVSITGDIV   75 (309)
Q Consensus        48 ~~~~~l~~~~~~i~~~~pD~vvitGDl~   75 (309)
                      .+....+.+.+.+.+.+||+|+..|=-.
T Consensus        44 ~~~~~~~~l~~~i~~~~Pd~vi~lG~a~   71 (201)
T PRK13193         44 EYDKIEDMIVTKIREYKPILTLGIGLAP   71 (201)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             0888999999999851996899805678


No 138
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=27.58  E-value=36  Score=13.34  Aligned_cols=18  Identities=22%  Similarity=0.233  Sum_probs=7.0

Q ss_pred             HHHHHHHCCCCEEEECCC
Q ss_conf             999996269979999374
Q gi|255764495|r   56 LINDILLHNVDHVSITGD   73 (309)
Q Consensus        56 ~~~~i~~~~pD~vvitGD   73 (309)
                      +++.+.+.+||+|+++|=
T Consensus        71 l~~~l~~~~~dlvvLAGy   88 (200)
T COG0299          71 LVEALDEYGPDLVVLAGY   88 (200)
T ss_pred             HHHHHHHCCCCEEEECCH
T ss_conf             999998529999998664


No 139
>pfam06925 MGDG_synth Monogalactosyldiacylglycerol (MGDG) synthase. This family represents a conserved region of approximately 180 residues within plant and bacterial monogalactosyldiacylglycerol (MGDG) synthase (EC:2.4.1.46). In Arabidopsis, there are two types of MGDG synthase which differ in their N-terminal portion: type A and type B.
Probab=27.47  E-value=37  Score=13.33  Aligned_cols=28  Identities=11%  Similarity=-0.152  Sum_probs=11.5

Q ss_pred             HHHHHHHHHCCCC-EEEECCCCCCCCCHH
Q ss_conf             9999999626997-999937444489989
Q gi|255764495|r   54 NLLINDILLHNVD-HVSITGDIVNFTCNR   81 (309)
Q Consensus        54 ~~~~~~i~~~~pD-~vvitGDl~~~~~~~   81 (309)
                      +++.+.++.+.+| .=+.-=|+.....+.
T Consensus         6 ~Al~ea~~~~~~~~~ev~i~D~~~~~~p~   34 (169)
T pfam06925         6 EALREAFNNEFGDEYQVVVHDSLKELNPF   34 (169)
T ss_pred             HHHHHHHHHHCCCCCEEEEEEHHHHCCHH
T ss_conf             99999998566998779998638853844


No 140
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT).  MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein.  The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=27.20  E-value=37  Score=13.29  Aligned_cols=42  Identities=14%  Similarity=0.210  Sum_probs=24.7

Q ss_pred             HHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf             899999987498199998767532478716998689999576
Q gi|255764495|r  212 QRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIAS  253 (309)
Q Consensus       212 ~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s  253 (309)
                      +-+.+++.+.+..++++|=..+|-.-..-+.-+..++++-|+
T Consensus       250 D~v~~~l~~lg~~~~f~~v~ikPGkp~~~g~~~~~~v~gLPG  291 (394)
T cd00887         250 DFVKEVLEELGGEVLFHGVAMKPGKPLAFGRLGGKPVFGLPG  291 (394)
T ss_pred             CHHHHHHHHCCCEEEEEEEECCCCCCEEEEEECCEEEEECCC
T ss_conf             339999997799899977413577622899989846996688


No 141
>TIGR00195 exoDNase_III exodeoxyribonuclease III; InterPro: IPR000097 DNA damaging agents such as the antitumor drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks.   AP endonucleases can be classified into two families based on sequence similarity. This family contains members of AP endonuclease family 1. Except for Rrp1 and arp, these enzymes are proteins of about 300 amino-acid residues. Rrp1 and arp both contain additional and unrelated sequences in their N-terminal section (about 400 residues for Rrp1 and 270 for arp). The proteins contain glutamate which has been shown , in the Escherichia coli enzyme to bind a divalent metal ion such as magnesium or manganese.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0006281 DNA repair, 0005622 intracellular.
Probab=26.82  E-value=38  Score=13.25  Aligned_cols=21  Identities=5%  Similarity=-0.008  Sum_probs=15.5

Q ss_pred             HHHHHHH--HHHHHHCCCCEEEE
Q ss_conf             8999999--99996269979999
Q gi|255764495|r   50 KEVANLL--INDILLHNVDHVSI   70 (309)
Q Consensus        50 ~~~l~~~--~~~i~~~~pD~vvi   70 (309)
                      ++.+..+  ++.+.+.+||.|.+
T Consensus        12 RAr~~~~dFl~~~~~~~pDilCl   34 (281)
T TIGR00195        12 RARLHKGDFLDWLKENKPDILCL   34 (281)
T ss_pred             HHHCCHHHHHHHHCCCCCCEEEC
T ss_conf             53300435888842389958732


No 142
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and  PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=26.75  E-value=38  Score=13.24  Aligned_cols=56  Identities=20%  Similarity=0.129  Sum_probs=34.5

Q ss_pred             CHHHHHHHHHHHHHCCCCEEE-ECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             089999999999626997999-937444489989999999999861899718999458842
Q gi|255764495|r   49 SKEVANLLINDILLHNVDHVS-ITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDA  108 (309)
Q Consensus        49 ~~~~l~~~~~~i~~~~pD~vv-itGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~  108 (309)
                      ..+..+.+++.+++.+.|.++ +.||=+    -.....+.+....-....+|..||+-=|-
T Consensus        77 ~~~~~~~~~~~l~~~~Id~Li~IGGdgS----~~~a~~L~~~~~~~~~~i~vvgIPkTIDN  133 (338)
T cd00363          77 TEEGRAKAAENLKKHGIDALVVIGGDGS----YTGADLLTEEWPSKYQGFNVIGLPGTIDN  133 (338)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCHH----HHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf             8677899999999829998999789269----99999999988852899518984103478


No 143
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=26.14  E-value=39  Score=13.17  Aligned_cols=27  Identities=26%  Similarity=0.142  Sum_probs=19.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             308999999999962699799993744
Q gi|255764495|r   48 FSKEVANLLINDILLHNVDHVSITGDI   74 (309)
Q Consensus        48 ~~~~~l~~~~~~i~~~~pD~vvitGDl   74 (309)
                      .+....+.+.+.+.+.+||+|+..|=-
T Consensus        46 ~f~~~~~~l~~~i~~~~Pd~vl~~G~A   72 (212)
T PRK13196         46 EPHAAAAALRALLEEHDPDAVLLTGLA   72 (212)
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             288899999999997199989992567


No 144
>TIGR02082 metH methionine synthase; InterPro: IPR011822   Vitamin B12 dependent methionine synthase 2.1.1.13 from EC (5-methyltetrahydrofolate--homocysteine S-methyltransferase) catalyses the conversion of 5-methyltetrahydrofolate and L-homocysteine to tetrahydrofolate and L-methionine as the final step in de novo methionine biosynthesis. The enzyme requires methylcobalamin as a cofactor. In humans, defects in this enzyme are the cause of autosomal recessive inherited methylcobalamin deficiency (CBLG), which causes mental retardation, macrocytic anemia and homocystinuria. Mild deficiencies in activity may result in mild hyperhomocysteinemia, and mutations in the enzyme may be involved in tumorigenesis. Vitamin B12 dependent methionine synthase is found in prokaryotes and eukaryotes, but in prokaryotes the cofactor is cobalamin.   This enzyme is a large protein composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and tetrahydrofolate , the third module binds the B12 cofactor , and the C-terminal module (activation domain) binds S-adenosylmethionine. The activation domain is essential for the reductive activation of the enzyme. During the catalytic cycle, the highly reactive cob(I)alamin intermediate can be oxidised to produce an inactive cob(II)alamin enzyme; the enzyme is then reactivated via reductive methylation by the activation domain . The activation domain adopts an unusual alpha/beta fold.Recent studies suggest that this enzyme exists as an ensemble of conformations with equilibria dependent on the oxidation and methylation state of the cobalamin and on the concentrations of substrates or products .; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0050897 cobalt ion binding, 0009086 methionine biosynthetic process.
Probab=26.12  E-value=39  Score=13.17  Aligned_cols=74  Identities=15%  Similarity=0.186  Sum_probs=33.5

Q ss_pred             EECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC--CCCC--CCCCCCC---HHHH
Q ss_conf             9719879998328888887554760089999999999852433697089998376888--7643--1101279---7899
Q gi|255764495|r  142 RIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVL--DTSS--LYNRMFG---IQRF  214 (309)
Q Consensus       142 ~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~--~~~~--~~~~~~~---~~~l  214 (309)
                      ....++-.+||||+..           ++.+...-+.|.+   .. . +.|.=||=-.  .+..  -.+.+..   ++.+
T Consensus       224 l~~~~~~~iGLNCAlG-----------pdel~~h~~~Ls~---~~-~-~~Vs~~PNAGLPn~~G~~AeY~l~P~~~A~~l  287 (1265)
T TIGR02082       224 LEHAEILIIGLNCALG-----------PDELRPHVKELSE---HA-E-AYVSVHPNAGLPNAFGKQAEYDLTPDELAKAL  287 (1265)
T ss_pred             HCCCCCCEECCCCCCC-----------HHHHHHHHHHHHH---HC-C-EEEEEECCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             5468730241231147-----------7789999999870---08-8-13888337888100477768755578999999


Q ss_pred             HHHHHHCCCEEE--EECCC
Q ss_conf             999987498199--99876
Q gi|255764495|r  215 QKMIWHEGADLI--LHGHT  231 (309)
Q Consensus       215 ~~~l~~~~v~lv--l~GH~  231 (309)
                      .+.+.+..+.+|  =||=+
T Consensus       288 ~~fa~eg~lniVGGCCGTT  306 (1265)
T TIGR02082       288 KDFAEEGGLNIVGGCCGTT  306 (1265)
T ss_pred             HHHHHHCCEEEEECCCCCC
T ss_conf             9999863903774268996


No 145
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=26.04  E-value=39  Score=13.16  Aligned_cols=16  Identities=6%  Similarity=0.071  Sum_probs=6.7

Q ss_pred             CHHHHHHHHHHHHHCC
Q ss_conf             0899999999996269
Q gi|255764495|r   49 SKEVANLLINDILLHN   64 (309)
Q Consensus        49 ~~~~l~~~~~~i~~~~   64 (309)
                      ..+++..+++.+...+
T Consensus        31 G~dl~~~ll~~~~~~~   46 (171)
T cd06533          31 GSDLMPALLELAAQKG   46 (171)
T ss_pred             HHHHHHHHHHHHHHCC
T ss_conf             1999999999998649


No 146
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=26.03  E-value=39  Score=13.16  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=11.7

Q ss_pred             HHHHHHHHHCCCCEEEECCCC
Q ss_conf             999999962699799993744
Q gi|255764495|r   54 NLLINDILLHNVDHVSITGDI   74 (309)
Q Consensus        54 ~~~~~~i~~~~pD~vvitGDl   74 (309)
                      +.+++.+++.+||.|-++.=.
T Consensus        41 ~~i~~~i~~~~pdiVgiS~~~   61 (121)
T pfam02310        41 EDIVEAIRAENPDVVGLSALM   61 (121)
T ss_pred             HHHHHHHHHCCCCEEEEECCC
T ss_conf             999999998099999995232


No 147
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=25.99  E-value=39  Score=13.15  Aligned_cols=35  Identities=11%  Similarity=0.081  Sum_probs=27.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             01233089999999999626997999937444489
Q gi|255764495|r   44 RKKYFSKEVANLLINDILLHNVDHVSITGDIVNFT   78 (309)
Q Consensus        44 ~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~   78 (309)
                      ....+....+++..+..++.+.+.++++||-....
T Consensus        73 ~~N~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~s  107 (235)
T COG2949          73 PPNRYYTYRIDAAIALYKAGKVNYLLLSGDNATVS  107 (235)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
T ss_conf             95576899999999998647704999816877534


No 148
>pfam08981 consensus
Probab=25.75  E-value=39  Score=13.13  Aligned_cols=26  Identities=12%  Similarity=0.173  Sum_probs=18.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             23308999999999962699799993
Q gi|255764495|r   46 KYFSKEVANLLINDILLHNVDHVSIT   71 (309)
Q Consensus        46 ~~~~~~~l~~~~~~i~~~~pD~vvit   71 (309)
                      .+...+.++.+++.+.+.+..-||++
T Consensus         7 ~~NT~~tl~~a~~ra~e~gI~~iVvA   32 (181)
T pfam08981         7 KENTEDTLELAAERAKELGIKHIVVA   32 (181)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             21389999999999997699769998


No 149
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=25.75  E-value=39  Score=13.13  Aligned_cols=48  Identities=4%  Similarity=0.011  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             9999999962699799993744448998999999999986189971899945884
Q gi|255764495|r   53 ANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHD  107 (309)
Q Consensus        53 l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD  107 (309)
                      .+.+++.+....||.+++-=++-+.   .-+    +.++.+....++.++.++-|
T Consensus        36 ~~~~l~~~~~~~~dvvllD~~mp~~---~g~----~~~~~l~~~~~vivls~~~~   83 (196)
T PRK10360         36 GREALAGLPGRGVQVCICDISMPDI---SGL----ELLSQLPKGMATIMLSVHDS   83 (196)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCC---CCH----HHHHHHHCCCCEEEEEECCC
T ss_conf             9999998874499999987887886---207----79999843874899973075


No 150
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=25.70  E-value=39  Score=13.12  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=11.2

Q ss_pred             HHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             9999998524336970899983
Q gi|255764495|r  173 HATSKLLRKANKKGFFRIIMMH  194 (309)
Q Consensus       173 ~~l~~~L~~~~~~~~~~iv~~H  194 (309)
                      +.|+..|+.++..+-..++++-
T Consensus       117 emLkl~L~~ar~lgi~~Vlvtc  138 (174)
T COG3981         117 EMLKLALEKARELGIKKVLVTC  138 (174)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEE
T ss_conf             9999999999984997699984


No 151
>pfam02698 DUF218 DUF218 domain. This large family of proteins contains several highly conserved charged amino acids, suggesting this may be an enzymatic domain (Bateman A pers. obs). The family includes SanA, which is involved in Vancomycin resistance. This protein may be involved in murein synthesis.
Probab=25.42  E-value=40  Score=13.09  Aligned_cols=47  Identities=11%  Similarity=0.021  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999996269979999374444899899999999998618997
Q gi|255764495|r   51 EVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPH   97 (309)
Q Consensus        51 ~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~   97 (309)
                      ..++..++..++.....|+++|+........|.+...+++..+..|.
T Consensus        17 ~R~~~a~~l~~~g~~~~ii~sGg~~~~~~~~ea~~~~~~l~~~gvp~   63 (148)
T pfam02698        17 ARLDAAAELYRAGPAPRIIVSGGAGGGEPVSEAEVMRRYLVELGVPA   63 (148)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCH
T ss_conf             99999999998099988998489888888789999999999869899


No 152
>TIGR02685 pter_reduc_Leis pteridine reductase; InterPro: IPR014058   Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family..
Probab=25.29  E-value=40  Score=13.07  Aligned_cols=33  Identities=18%  Similarity=0.113  Sum_probs=27.0

Q ss_pred             CCCCHHHHHHHHHHHHHCCC-CEEEECCCCCCCC
Q ss_conf             23308999999999962699-7999937444489
Q gi|255764495|r   46 KYFSKEVANLLINDILLHNV-DHVSITGDIVNFT   78 (309)
Q Consensus        46 ~~~~~~~l~~~~~~i~~~~p-D~vvitGDl~~~~   78 (309)
                      .+.....-..|.+.+|+++| -+|++-|||++..
T Consensus        32 Yh~Sa~aA~~LaaeLNa~R~nsAv~~qaDLsns~   65 (283)
T TIGR02685        32 YHRSAAAASTLAAELNAERANSAVVCQADLSNSA   65 (283)
T ss_pred             ECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf             0245678999999973407897699961313100


No 153
>TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828    6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=25.28  E-value=40  Score=13.07  Aligned_cols=51  Identities=18%  Similarity=0.223  Sum_probs=35.1

Q ss_pred             CHHHHHHHHHHHHHCCCC-EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             089999999999626997-999937444489989999999999861899718999458842
Q gi|255764495|r   49 SKEVANLLINDILLHNVD-HVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDA  108 (309)
Q Consensus        49 ~~~~l~~~~~~i~~~~pD-~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~  108 (309)
                      .++.-+..++.+++.+.| +||+-||       -.|.=|..+.++-  ..||.-+||==|-
T Consensus        76 ~~evR~kA~~nLK~~GI~~LVViGGD-------GSy~GA~~L~~~g--g~~~iGlPGTIDN  127 (302)
T TIGR02482        76 TEEVREKAVENLKKLGIEALVVIGGD-------GSYTGAQKLYEEG--GIPVIGLPGTIDN  127 (302)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEEECCC-------HHHHHHHHHHHHC--CCCEEEECCCCCC
T ss_conf             87899999999887488668998684-------4068899999717--9847874585025


No 154
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=25.04  E-value=40  Score=13.04  Aligned_cols=26  Identities=12%  Similarity=0.060  Sum_probs=20.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             30899999999996269979999374
Q gi|255764495|r   48 FSKEVANLLINDILLHNVDHVSITGD   73 (309)
Q Consensus        48 ~~~~~l~~~~~~i~~~~pD~vvitGD   73 (309)
                      ...+.++.+-+.+++.+||.||+-|+
T Consensus        28 ~~~~a~~~~~~~l~~~~PDvvVvi~~   53 (271)
T cd07359          28 AVFAAFARIRDRLEAARPDVVVVVGN   53 (271)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             99999999999999839899999836


No 155
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues.  In addition,  PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=25.00  E-value=40  Score=13.04  Aligned_cols=27  Identities=19%  Similarity=0.196  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCC-CCCCC
Q ss_conf             99999999996269979999374-44489
Q gi|255764495|r   51 EVANLLINDILLHNVDHVSITGD-IVNFT   78 (309)
Q Consensus        51 ~~l~~~~~~i~~~~pD~vvitGD-l~~~~   78 (309)
                      ...++.++..++..|| ||+.|| +|...
T Consensus        19 ~~h~~~~~~~~~~~~~-ivf~GdSit~~W   46 (214)
T cd01820          19 SRHERFVAEAKQKEPD-VVFIGDSITQNW   46 (214)
T ss_pred             HHHHHHHHHHHCCCCC-EEEECCHHHHHH
T ss_conf             9999999971028999-999816587512


No 156
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=24.58  E-value=41  Score=12.98  Aligned_cols=12  Identities=17%  Similarity=-0.044  Sum_probs=5.1

Q ss_pred             CEEEEEECCCCC
Q ss_conf             689999576235
Q gi|255764495|r  245 LIPVVGIASASQ  256 (309)
Q Consensus       245 ~~~~~~~~s~~~  256 (309)
                      .+++..+|+...
T Consensus       330 ~~~VAVAGGI~~  341 (392)
T PRK13307        330 KILVAVAGGVRV  341 (392)
T ss_pred             CEEEEEECCCCH
T ss_conf             805999778888


No 157
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX,  which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=24.52  E-value=41  Score=12.98  Aligned_cols=48  Identities=13%  Similarity=0.028  Sum_probs=31.3

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             089999999999626997999937444489989999999999861899
Q gi|255764495|r   49 SKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNP   96 (309)
Q Consensus        49 ~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~   96 (309)
                      ....++..++..++.....|+++|+........|.+...+++.....+
T Consensus        19 ~~~R~~~a~~L~~~~~~~~ii~sGg~~~~~~~~Ea~~~~~~l~~~gv~   66 (150)
T cd06259          19 LAERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVP   66 (150)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             999999999999819998899958879999889999999999985999


No 158
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase.  These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=24.40  E-value=42  Score=12.96  Aligned_cols=12  Identities=33%  Similarity=0.434  Sum_probs=6.3

Q ss_pred             HHHCCCCEEEEC
Q ss_conf             962699799993
Q gi|255764495|r   60 ILLHNVDHVSIT   71 (309)
Q Consensus        60 i~~~~pD~vvit   71 (309)
                      +...+||.||++
T Consensus        38 ~~~~~~~giiLS   49 (184)
T cd01743          38 LELLNPDAIVIS   49 (184)
T ss_pred             HHHCCCCEEEEC
T ss_conf             973297999999


No 159
>PTZ00099 rab6; Provisional
Probab=24.35  E-value=42  Score=12.96  Aligned_cols=44  Identities=20%  Similarity=0.351  Sum_probs=29.5

Q ss_pred             HHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH----CCCCCEEEEECCCCC
Q ss_conf             626997999937444489989999999999861----899718999458842
Q gi|255764495|r   61 LLHNVDHVSITGDIVNFTCNREIFTSTHWLRSI----GNPHDISIVPGNHDA  108 (309)
Q Consensus        61 ~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l----~~~~~v~~v~GNHD~  108 (309)
                      --.+++.+++.-|+++.   ..|..+..|++.+    ....+ .++.||-=.
T Consensus        49 y~r~a~~~ilVyDit~~---~SF~~l~~W~~~i~~~~~~~~~-iiLVGNK~D   96 (176)
T PTZ00099         49 YIRDSAAAIVVYDITNR---QSFENTTKWIQDILNERGKDVI-IALVGNKTD   96 (176)
T ss_pred             HHCCCCEEEEEECCCHH---HHHHHHHHHHHHHHHHCCCCCC-EEEEEECCC
T ss_conf             70798679998504207---7899999999999985388774-399985565


No 160
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=24.33  E-value=42  Score=12.95  Aligned_cols=26  Identities=12%  Similarity=0.111  Sum_probs=18.6

Q ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf             99999996269979999374444899
Q gi|255764495|r   54 NLLINDILLHNVDHVSITGDIVNFTC   79 (309)
Q Consensus        54 ~~~~~~i~~~~pD~vvitGDl~~~~~   79 (309)
                      ...+.++.+..++.+++++|+...+.
T Consensus         4 ~~~l~~~~~~d~~vv~l~~Dl~~~~~   29 (156)
T cd07033           4 GEALLELAKKDPRIVALSADLGGSTG   29 (156)
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf             99999999779799999687678877


No 161
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840    This enzyme is a member of the radical-SAM family. It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD..
Probab=24.25  E-value=42  Score=12.94  Aligned_cols=44  Identities=20%  Similarity=0.057  Sum_probs=29.0

Q ss_pred             CCCCHHHHHHHHHHHHHCCC--CEEEECCCCCCCCCHHHHHH-HHHHHHHHC
Q ss_conf             23308999999999962699--79999374444899899999-999998618
Q gi|255764495|r   46 KYFSKEVANLLINDILLHNV--DHVSITGDIVNFTCNREIFT-STHWLRSIG   94 (309)
Q Consensus        46 ~~~~~~~l~~~~~~i~~~~p--D~vvitGDl~~~~~~~~~~~-~~~~~~~l~   94 (309)
                      .....--++.+++.+++.+.  |.|||||     |.|--++. +..++.++.
T Consensus        43 ~~~~~~~~e~~~~~L~~R~~ll~gVVitG-----GEptlQ~~eL~d~~~~v~   89 (220)
T TIGR02495        43 KGSGEIELEELLEFLRRRQGLLDGVVITG-----GEPTLQAGELGDFLREVR   89 (220)
T ss_pred             CCCCCCCHHHHHHHHHHCCCCEEEEEEEC-----CCHHHHHHHHHHHHHHHH
T ss_conf             05761027779999873134210578728-----753236777899999999


No 162
>smart00594 UAS UAS domain.
Probab=24.18  E-value=42  Score=12.94  Aligned_cols=54  Identities=9%  Similarity=0.157  Sum_probs=28.6

Q ss_pred             HHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             999852433697089998376888764311012797899999987498199998767
Q gi|255764495|r  176 SKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTH  232 (309)
Q Consensus       176 ~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H  232 (309)
                      .+.++.++...++.+|..|.+-..........+...+.+.+.+.+   ..|+.|...
T Consensus        17 ~~A~~~Ak~~~K~LlVylh~~~~~~~~~f~Rdvl~~~~V~~~i~~---nfVfw~~d~   70 (122)
T smart00594       17 EAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDV   70 (122)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHH---CEEEEEECC
T ss_conf             999999985067269999378854389999986278889999973---488987516


No 163
>pfam10686 DUF2493 Protein of unknown function (DUF2493). Members of this family are all Proteobacteria. The function is not known.
Probab=23.93  E-value=42  Score=12.90  Aligned_cols=41  Identities=15%  Similarity=0.223  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             899999999996269979999374444899899999999998618
Q gi|255764495|r   50 KEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIG   94 (309)
Q Consensus        50 ~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~   94 (309)
                      ...+...+..+.++.||.+++.|--.. |   .-..+.+|-++..
T Consensus        17 ~~~i~~~Ld~~~~~~pd~vlihGG~~k-G---ad~lA~~WA~~~g   57 (71)
T pfam10686        17 HRLIWDALDKVHARHPDMVLLHGGAPK-G---AERIAARWARRRG   57 (71)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCCC-C---HHHHHHHHHHHCC
T ss_conf             999999999999868987999779863-3---7999999999869


No 164
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain; InterPro: IPR005974    The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I.    This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model IPR005972 from INTERPRO.; GO: 0016163 nitrogenase activity, 0051536 iron-sulfur cluster binding, 0009399 nitrogen fixation.
Probab=23.80  E-value=43  Score=12.89  Aligned_cols=48  Identities=21%  Similarity=0.297  Sum_probs=34.6

Q ss_pred             CHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCE
Q ss_conf             9789999998749819999876753247871699868999957623577888877854
Q gi|255764495|r  210 GIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASY  267 (309)
Q Consensus       210 ~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y  267 (309)
                      |.=++.|+|..+.+|++|+|---..-...+.     +|++..-|     ..+++..||
T Consensus       394 NeLE~~Eiie~~kPDiIltG~r~gelakKl~-----vPy~~~H~-----Y~NGPY~GF  441 (468)
T TIGR01284       394 NELELLEIIELLKPDIILTGKREGELAKKLR-----VPYINIHS-----YHNGPYIGF  441 (468)
T ss_pred             CCCHHHHHHHHHCCCEEEECCCCCEEEEEEC-----CCEEEECC-----CCCCCCCCC
T ss_conf             7503888986418888971786650476530-----67674015-----347784550


No 165
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=23.78  E-value=43  Score=12.89  Aligned_cols=52  Identities=13%  Similarity=0.151  Sum_probs=35.2

Q ss_pred             HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             9999962699799993744448998999999999986189971899945884222
Q gi|255764495|r   56 LINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYI  110 (309)
Q Consensus        56 ~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~  110 (309)
                      +.+.+.+.+.|+|++.|=.-..   ..++.....+++...+.||..=|||.....
T Consensus        17 l~~~~~~sgtDai~VGGS~~~~---~~~~~~v~~ik~~~~~~PvilfPg~~~~is   68 (219)
T cd02812          17 IAKLAEESGTDAIMVGGSDGVS---STLDNVVRLIKRIRRPVPVILFPSNPEAVS   68 (219)
T ss_pred             HHHHHHHHCCCEEEECCCCCCH---HHHHHHHHHHHHHCCCCCEEEECCCHHHCC
T ss_conf             9999997699999993755744---779999999997378999899579866568


No 166
>TIGR01264 tyr_amTase_E tyrosine aminotransferase; InterPro: IPR005957   This entry describes tyrosine aminotransferase (2.6.1.5 from EC) as found in animals and Trypanosoma cruzi (Euglenozoa). It is the first enzyme of a pathway of tyrosine degradation via homogentisate.  L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate.; GO: 0004838 tyrosine transaminase activity, 0030170 pyridoxal phosphate binding, 0009072 aromatic amino acid family metabolic process.
Probab=23.73  E-value=43  Score=12.88  Aligned_cols=104  Identities=10%  Similarity=0.088  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCC---------EEEEECCCCCCEEEEE
Q ss_conf             9999999999852433697089998376888764311012797899999987498---------1999987675324787
Q gi|255764495|r  169 QEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGA---------DLILHGHTHLNSLHWI  239 (309)
Q Consensus       169 ~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v---------~lvl~GH~H~~~~~~~  239 (309)
                      +++.+.=-.+|++..++++..|++.- |--+-++...  -..-+++..+.+++.+         ++|+.|-.=...+..+
T Consensus       160 d~~w~~DL~~l~~LiDd~T~~l~vnN-PSNPcGSvF~--~~Hl~~l~a~A~~~~Lpi~ADEIY~~~VF~GkDPnatF~~l  236 (415)
T TIGR01264       160 DEDWEIDLKQLESLIDDKTKALIVNN-PSNPCGSVFR--REHLEELLALAERLKLPIIADEIYGDMVFKGKDPNATFTPL  236 (415)
T ss_pred             CCHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCCCCC--HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEE
T ss_conf             73356648988631256740788837-5778898878--78899999998753872366420256513886786422020


Q ss_pred             ECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             1699868999957623577888877854899995389
Q gi|255764495|r  240 KNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKN  276 (309)
Q Consensus       240 ~~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~  276 (309)
                      ..=+..+|++.+++.+.+..-.+++=||=+| .++.+
T Consensus       237 A~L~s~VP~~~cgG~AKr~lVPGWRLGWli~-hd~~~  272 (415)
T TIGR01264       237 ASLSSKVPILSCGGLAKRWLVPGWRLGWLII-HDRKG  272 (415)
T ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCCCCEEE-ECCCC
T ss_conf             2377998868707632002247611024788-87888


No 167
>PRK05670 anthranilate synthase component II; Provisional
Probab=23.66  E-value=43  Score=12.87  Aligned_cols=14  Identities=14%  Similarity=0.238  Sum_probs=6.6

Q ss_pred             HHHHHCCCCEEEEC
Q ss_conf             99962699799993
Q gi|255764495|r   58 NDILLHNVDHVSIT   71 (309)
Q Consensus        58 ~~i~~~~pD~vvit   71 (309)
                      +.+.+.+||.|+++
T Consensus        37 ~~i~~~~pdgiiLS   50 (192)
T PRK05670         37 EEIEALAPDAIVLS   50 (192)
T ss_pred             HHHHHCCCCEEEEC
T ss_conf             99985098989999


No 168
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=23.29  E-value=44  Score=12.82  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHC-----CCCEEEECCCCC
Q ss_conf             99999999626-----997999937444
Q gi|255764495|r   53 ANLLINDILLH-----NVDHVSITGDIV   75 (309)
Q Consensus        53 l~~~~~~i~~~-----~pD~vvitGDl~   75 (309)
                      .+.+++.+.++     ++|+|+--|-+.
T Consensus        52 ~~~i~~~i~e~g~~i~~~dAvvgRGGLL   79 (358)
T COG3426          52 KDAILEFIDEQGYNISKFDAVVGRGGLL   79 (358)
T ss_pred             HHHHHHHHHHHCCCCCCCCCEEECCCCC
T ss_conf             9999999997187757740013057644


No 169
>pfam04587 ADP_PFK_GK ADP-specific Phosphofructokinase/Glucokinase conserved region. In archaea a novel type of glycolytic pathway exists that is deviant from the classical Embden-Meyerhof pathway. This pathway utilizes two novel proteins: an ADP-dependent Glucokinase and an ADP-dependent Phosphofructokinase. This conserved region is present at the C-terminal of both these proteins. Interestingly this family contains sequences from higher eukaryotes..
Probab=23.24  E-value=44  Score=12.82  Aligned_cols=54  Identities=9%  Similarity=-0.007  Sum_probs=29.6

Q ss_pred             CCHHHHHHHHHHHHHC--CCCEEEECCC----C--CCCCCHHH-HHHHHHHHHHHCC--CCCEEE
Q ss_conf             3089999999999626--9979999374----4--44899899-9999999986189--971899
Q gi|255764495|r   48 FSKEVANLLINDILLH--NVDHVSITGD----I--VNFTCNRE-IFTSTHWLRSIGN--PHDISI  101 (309)
Q Consensus        48 ~~~~~l~~~~~~i~~~--~pD~vvitGD----l--~~~~~~~~-~~~~~~~~~~l~~--~~~v~~  101 (309)
                      ......+.+.+.+.+.  +||++|++|=    .  .+.+..++ ++.+++.+..+..  ..|+.+
T Consensus       191 ~~l~~~e~f~~~l~~~~~~~Dl~vlSGlq~l~~~~~d~~~~~~~l~~~~e~l~~lk~~~~i~iH~  255 (444)
T pfam04587       191 PRLEIKEELREFLEEIGEQVDLAILSGLQMLTLFYSDGKDAEYYLKRVKEDIKLLKKPKGIKVHL  255 (444)
T ss_pred             CCCEEHHHHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             54123298999999744588889996234320347786348999999999999823688986699


No 170
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=23.16  E-value=44  Score=12.81  Aligned_cols=11  Identities=0%  Similarity=0.205  Sum_probs=5.3

Q ss_pred             EEECCCCCCCC
Q ss_conf             94111427885
Q gi|255764495|r   14 HISDIHLSYSP   24 (309)
Q Consensus        14 hlSDlHlg~~~   24 (309)
                      -+.|+-|...+
T Consensus        16 vl~~vs~~i~~   26 (204)
T PRK13538         16 LFEGLSFTLNA   26 (204)
T ss_pred             EEECEEEEECC
T ss_conf             98051779879


No 171
>cd04121 Rab40 Rab40 subfamily.  This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous.  In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle.  Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components.  Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are further regulated by guanine nucleotide d
Probab=22.94  E-value=44  Score=12.78  Aligned_cols=41  Identities=20%  Similarity=0.253  Sum_probs=27.6

Q ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHHHHH---CCCCCEEEEECCCC
Q ss_conf             6997999937444489989999999999861---89971899945884
Q gi|255764495|r   63 HNVDHVSITGDIVNFTCNREIFTSTHWLRSI---GNPHDISIVPGNHD  107 (309)
Q Consensus        63 ~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l---~~~~~v~~v~GNHD  107 (309)
                      .+++.+++.=|+++.   ..|+.+..|++++   ....|+ ++.||-=
T Consensus        77 r~a~~~ilvyDvt~~---~Sf~~l~~w~~~i~~~~~~~p~-iLVGNK~  120 (189)
T cd04121          77 RGAQGIILVYDITNR---WSFDGIDRWIKEIDEHAPGVPK-ILVGNRL  120 (189)
T ss_pred             HHCCCEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCCE-EEEEECC
T ss_conf             633704898227988---9999999999999997689878-9961325


No 172
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein; InterPro: IPR014182   Members of this entry form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases. Some current members of this entry carry designations as putative alginate lyase, however none have been characterised as such..
Probab=22.55  E-value=45  Score=12.73  Aligned_cols=36  Identities=22%  Similarity=0.237  Sum_probs=28.9

Q ss_pred             HHHHCCC-CEEEECCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             9962699-79999374444899899999999998618
Q gi|255764495|r   59 DILLHNV-DHVSITGDIVNFTCNREIFTSTHWLRSIG   94 (309)
Q Consensus        59 ~i~~~~p-D~vvitGDl~~~~~~~~~~~~~~~~~~l~   94 (309)
                      .+.--+| |-|.-+|||.-.|+.+||....+.+..-.
T Consensus        78 ~VtLFKpGDeVwYAG~i~RpGsNaEfhLVDERIVG~K  114 (338)
T TIGR02817        78 EVTLFKPGDEVWYAGDITRPGSNAEFHLVDERIVGHK  114 (338)
T ss_pred             CCCEECCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             1001027875575433688831468887789983689


No 173
>pfam03841 SelA L-seryl-tRNA selenium transferase.
Probab=22.54  E-value=41  Score=13.02  Aligned_cols=18  Identities=17%  Similarity=-0.069  Sum_probs=10.2

Q ss_pred             EECHHHHHHHHHHHHHCC
Q ss_conf             008999999999985243
Q gi|255764495|r  166 YFGQEQAHATSKLLRKAN  183 (309)
Q Consensus       166 ~~~~~q~~~l~~~L~~~~  183 (309)
                      +.+...+..|+..|+.+.
T Consensus       243 RvDKltLaaLeatL~~Yl  260 (367)
T pfam03841       243 RVDKLTLAALEATLRLYL  260 (367)
T ss_pred             CCCHHHHHHHHHHHHHHH
T ss_conf             458899999999999984


No 174
>TIGR02845 spore_V_AD stage V sporulation protein AD; InterPro: IPR010894   This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation ..
Probab=22.12  E-value=46  Score=12.68  Aligned_cols=86  Identities=14%  Similarity=0.154  Sum_probs=45.8

Q ss_pred             CCCCCCEECHHHHHHHHHHHHHCCCCCC-EEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHC-CCEEEEECCCCCCEEE
Q ss_conf             7554760089999999999852433697-0899983768887643110127978999999874-9819999876753247
Q gi|255764495|r  160 PFSANGYFGQEQAHATSKLLRKANKKGF-FRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHE-GADLILHGHTHLNSLH  237 (309)
Q Consensus       160 ~~~~~g~~~~~q~~~l~~~L~~~~~~~~-~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~-~v~lvl~GH~H~~~~~  237 (309)
                      |..-.+-+.|+-.+=++.-|++...... .-++++- -+         .-.+++-++++|++. |++   .|-.+.+--.
T Consensus       195 P~~mG~AMAPAAaDTI~~Hf~dtg~~~~DYDLIvTG-DL---------~rvG~~I~~~LL~e~yg~~---~~~~Y~DCG~  261 (331)
T TIGR02845       195 PLDMGAAMAPAAADTIEAHFKDTGRSVDDYDLIVTG-DL---------ARVGSEILRKLLKEEYGYD---VTEKYDDCGV  261 (331)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC-CH---------HHHHHHHHHHHHHHHHCCC---CCCEECCCCE
T ss_conf             641135412689999999998707880401367873-30---------0214899999988860875---0001045646


Q ss_pred             EEECCCCC-EEEEEECCCCCCC
Q ss_conf             87169986-8999957623577
Q gi|255764495|r  238 WIKNEKKL-IPVVGIASASQKV  258 (309)
Q Consensus       238 ~~~~~~~~-~~~~~~~s~~~~~  258 (309)
                      .|..++-+ +..-+.|.+||..
T Consensus       262 ~IY~~dqqdV~AGGSG~ACSAv  283 (331)
T TIGR02845       262 MIYRPDQQDVFAGGSGCACSAV  283 (331)
T ss_pred             EEECCCCCCCCCCCCCCCHHHE
T ss_conf             7533887810577856650332


No 175
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913    dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen.  dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH  ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=22.03  E-value=46  Score=12.66  Aligned_cols=66  Identities=14%  Similarity=0.011  Sum_probs=38.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH---HHH-----HHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf             33089999999999626997999937444489989---999-----9999998618997189994588422220
Q gi|255764495|r   47 YFSKEVANLLINDILLHNVDHVSITGDIVNFTCNR---EIF-----TSTHWLRSIGNPHDISIVPGNHDAYISG  112 (309)
Q Consensus        47 ~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~---~~~-----~~~~~~~~l~~~~~v~~v~GNHD~~~~~  112 (309)
                      ......-+.+.+.+++.+||+||.|.=.|+.-..|   +..     .+-.-+......+....|-=--|+..++
T Consensus        43 ~~Dl~dP~~l~~~~r~~~Pd~vvntAAYT~VD~AE~~~~~AyavNa~A~~~lA~~A~~~Ga~~vh~STDYVFDG  116 (317)
T TIGR01214        43 QLDLTDPEALEELLRAIRPDAVVNTAAYTDVDGAESDPEKAYAVNALAPQNLARAAARVGARLVHISTDYVFDG  116 (317)
T ss_pred             HHCCCCHHHHHHHHHHHCCCEEEECCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECEEECC
T ss_conf             40622468899999852875376230110100003777787657407899999999866915999863423447


No 176
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit; InterPro: IPR006138   Respiratory-chain NADH dehydrogenase (1.6.5.3 from EC) (also known as complex I or NADH-ubiquinone oxidoreductase) is an oligomeric enzymatic complex located in the inner mitochondrial membrane which also seems to exist in the chloroplast and in cyanobacteria (as a NADH-plastoquinone oxidoreductase).    Among the 25 to 30 polypeptide subunits of this bioenergetic enzyme complex there is one with a molecular weight of 20 kDa (in mammals) , which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is mitochondrial encoded in Paramecium (gene psbG) and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006120 mitochondrial electron transport NADH to ubiquinone.
Probab=22.01  E-value=46  Score=12.66  Aligned_cols=39  Identities=10%  Similarity=0.205  Sum_probs=27.2

Q ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-ECCCC
Q ss_conf             6997999937444489989999999999861899718999-45884
Q gi|255764495|r   63 HNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIV-PGNHD  107 (309)
Q Consensus        63 ~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v-~GNHD  107 (309)
                      .+.|++|++|=+|+.-.|    .++++.++...|  -|+| .|+==
T Consensus        56 RQaDvMIvAGT~t~KmAP----~lrrlYDQMPeP--KwVIsMG~CA   95 (146)
T TIGR01957        56 RQADVMIVAGTVTKKMAP----VLRRLYDQMPEP--KWVISMGACA   95 (146)
T ss_pred             CCCCEEEECCCCCEEHHH----HHHHHHHHCCCC--CEEEECCCCC
T ss_conf             613334454864100434----776687537899--7798517600


No 177
>PRK00955 hypothetical protein; Provisional
Probab=21.89  E-value=46  Score=12.65  Aligned_cols=47  Identities=21%  Similarity=0.362  Sum_probs=24.7

Q ss_pred             CCCCEEEECCCCC-CCCCHHHHHHHHHHHH---------------------HHCCCCCEE-EEECCCCCCC
Q ss_conf             6997999937444-4899899999999998---------------------618997189-9945884222
Q gi|255764495|r   63 HNVDHVSITGDIV-NFTCNREIFTSTHWLR---------------------SIGNPHDIS-IVPGNHDAYI  110 (309)
Q Consensus        63 ~~pD~vvitGDl~-~~~~~~~~~~~~~~~~---------------------~l~~~~~v~-~v~GNHD~~~  110 (309)
                      ..+|+|++|||-. |..+=. .+....+++                     .|+.|.-++ +..||-|.+.
T Consensus        12 d~lDvIlVtGDAYVDHPsFG-~AiIgR~Le~~GyrVgIIaQPdw~~~~df~~lG~PrLffgVsaGn~DSMV   81 (599)
T PRK00955         12 DELDFILVTGDAYVDHPSFG-TAIIGRVLEAEGFRVGIIAQPNWRDLEDFKKLGKPRLFFLVSAGNMDSMV   81 (599)
T ss_pred             CCCCEEEEECCCCCCCCCCH-HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCEEEEECCCCHHHHH
T ss_conf             74778999476125686404-89999999976965989728998984779972898578776465487888


No 178
>cd04124 RabL2 RabL2 subfamily.  RabL2 (Rab-like2) subfamily.  RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share  98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown.  GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=21.82  E-value=47  Score=12.64  Aligned_cols=13  Identities=8%  Similarity=0.115  Sum_probs=6.4

Q ss_pred             CCCEEEECCCCCC
Q ss_conf             9979999374444
Q gi|255764495|r   64 NVDHVSITGDIVN   76 (309)
Q Consensus        64 ~pD~vvitGDl~~   76 (309)
                      +++.+++.=|+++
T Consensus        72 ~a~~~ilvfDit~   84 (161)
T cd04124          72 KAHACILVFDVTR   84 (161)
T ss_pred             CCCEEEEEEECCC
T ss_conf             6876799996897


No 179
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=21.73  E-value=47  Score=12.62  Aligned_cols=49  Identities=12%  Similarity=0.194  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCC-CCEEEEEC
Q ss_conf             99999999626997999937444489989999999999861899-71899945
Q gi|255764495|r   53 ANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNP-HDISIVPG  104 (309)
Q Consensus        53 l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~-~~v~~v~G  104 (309)
                      .+.+++.+.+++||+|.++.=++..  ........+.+++...+ .|+ +|=|
T Consensus        39 ~e~~v~~a~~~~~d~I~lS~~~~~~--~~~~~~~i~~l~~~g~~~i~v-~vGG   88 (119)
T cd02067          39 PEEIVEAAKEEDADAIGLSGLLTTH--MTLMKEVIEELKEAGLDDIPV-LVGG   88 (119)
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCC--HHHHHHHHHHHHHCCCCCCEE-EEEC
T ss_conf             9999999997099999996220242--689999999999769999859-9989


No 180
>PRK09191 two-component response regulator; Provisional
Probab=21.55  E-value=47  Score=12.60  Aligned_cols=18  Identities=17%  Similarity=0.062  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHCCCEEEEE
Q ss_conf             789999998749819999
Q gi|255764495|r  211 IQRFQKMIWHEGADLILH  228 (309)
Q Consensus       211 ~~~l~~~l~~~~v~lvl~  228 (309)
                      .++..++.++.++|++|.
T Consensus       171 ~~eAl~la~~~~PDlvL~  188 (261)
T PRK09191        171 RAEAVALAKKTRPGLILA  188 (261)
T ss_pred             HHHHHHHHHCCCCCEEEE
T ss_conf             999999974259898999


No 181
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase; InterPro: IPR012764    Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of Escherichia coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this family.; GO: 0016758 transferase activity transferring hexosyl groups, 0051473 glucosylglycerol biosynthetic process.
Probab=21.31  E-value=48  Score=12.57  Aligned_cols=15  Identities=27%  Similarity=0.671  Sum_probs=8.7

Q ss_pred             EEEEEEECCCCCCCC
Q ss_conf             089998376888764
Q gi|255764495|r  188 FRIIMMHHPPVLDTS  202 (309)
Q Consensus       188 ~~iv~~Hhpp~~~~~  202 (309)
                      .+|.++||-|+++.+
T Consensus       160 lkIAFFHHTpFPs~D  174 (495)
T TIGR02398       160 LKIAFFHHTPFPSAD  174 (495)
T ss_pred             CEEEEECCCCCCCCC
T ss_conf             603300168888754


No 182
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052   Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery .  Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=21.30  E-value=48  Score=12.57  Aligned_cols=20  Identities=25%  Similarity=0.190  Sum_probs=16.2

Q ss_pred             HHHHHHHHCCCCEEEECCCCCC
Q ss_conf             9999996269979999374444
Q gi|255764495|r   55 LLINDILLHNVDHVSITGDIVN   76 (309)
Q Consensus        55 ~~~~~i~~~~pD~vvitGDl~~   76 (309)
                      ..++.|++++||.||+  ||.-
T Consensus        39 ~a~~~I~~q~PD~vvL--DIIM   58 (270)
T TIGR02875        39 DALELIKEQKPDVVVL--DIIM   58 (270)
T ss_pred             HHHHHHHHCCCCEEEE--CCCC
T ss_conf             9999996089989995--1504


No 183
>PRK05637 anthranilate synthase component II; Provisional
Probab=21.18  E-value=48  Score=12.55  Aligned_cols=14  Identities=29%  Similarity=0.399  Sum_probs=5.8

Q ss_pred             HHHHCCCCEEEECC
Q ss_conf             99626997999937
Q gi|255764495|r   59 DILLHNVDHVSITG   72 (309)
Q Consensus        59 ~i~~~~pD~vvitG   72 (309)
                      ++.+.+||.||+++
T Consensus        39 ~~~~~~pd~ivlSP   52 (208)
T PRK05637         39 TILAANPDLICLSP   52 (208)
T ss_pred             HHHHCCCCEEEECC
T ss_conf             99851999599999


No 184
>KOG3873 consensus
Probab=21.11  E-value=48  Score=12.54  Aligned_cols=24  Identities=17%  Similarity=0.200  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             999999999852433697089998
Q gi|255764495|r  170 EQAHATSKLLRKANKKGFFRIIMM  193 (309)
Q Consensus       170 ~q~~~l~~~L~~~~~~~~~~iv~~  193 (309)
                      .|...+.+.++.....+..+|+..
T Consensus       154 ~QAwdlaqfi~~t~q~~~vVI~~G  177 (422)
T KOG3873         154 AQAWDLAQFIRATRQNADVVILAG  177 (422)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             989999999999744786899946


No 185
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=21.09  E-value=48  Score=12.54  Aligned_cols=24  Identities=21%  Similarity=0.108  Sum_probs=17.4

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             089999999999626997999937
Q gi|255764495|r   49 SKEVANLLINDILLHNVDHVSITG   72 (309)
Q Consensus        49 ~~~~l~~~~~~i~~~~pD~vvitG   72 (309)
                      +....+.+.+.+.+.+||+||..|
T Consensus        46 ~~~~~~~l~~~l~~~~Pd~Vl~lG   69 (215)
T PRK13197         46 FGKSLDVLKEAIEEVQPDAVIAIG   69 (215)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             888899999999987998899924


No 186
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=21.04  E-value=48  Score=12.53  Aligned_cols=28  Identities=14%  Similarity=-0.096  Sum_probs=20.0

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             3089999999999626997999937444
Q gi|255764495|r   48 FSKEVANLLINDILLHNVDHVSITGDIV   75 (309)
Q Consensus        48 ~~~~~l~~~~~~i~~~~pD~vvitGDl~   75 (309)
                      ......+.+.+.+.+.+||+||+.|--.
T Consensus        44 ~~~~~~~~l~~~i~~~~Pd~vi~lG~a~   71 (204)
T PRK13194         44 SFKRAREVLEKTLDEIKPDITINLGLAP   71 (204)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             6899999999999851998999824578


No 187
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=20.86  E-value=49  Score=12.51  Aligned_cols=21  Identities=10%  Similarity=-0.118  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEEC
Q ss_conf             999999999962699799993
Q gi|255764495|r   51 EVANLLINDILLHNVDHVSIT   71 (309)
Q Consensus        51 ~~l~~~~~~i~~~~pD~vvit   71 (309)
                      ..++++.+.|++.+||.||+.
T Consensus        37 ~ay~~~~~~i~~~~pDtIVV~   57 (294)
T cd07372          37 WAYERARESIEALKPDVLLVH   57 (294)
T ss_pred             HHHHHHHHHHHHCCCCEEEEE
T ss_conf             999999999986399889998


No 188
>cd04118 Rab24 Rab24 subfamily.  Rab24 is distinct from other Rabs in several ways.  It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments.  It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways.  GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state.  Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=20.84  E-value=49  Score=12.51  Aligned_cols=43  Identities=9%  Similarity=0.253  Sum_probs=27.1

Q ss_pred             HCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH---CCCCCEEEEECCCCC
Q ss_conf             26997999937444489989999999999861---899718999458842
Q gi|255764495|r   62 LHNVDHVSITGDIVNFTCNREIFTSTHWLRSI---GNPHDISIVPGNHDA  108 (309)
Q Consensus        62 ~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l---~~~~~v~~v~GNHD~  108 (309)
                      -.++|.+++.=|+++.   ..|+.+..|+..+   ....|+ ++.||--.
T Consensus        71 ~~~a~~~ilvydit~~---~Sf~~i~~W~~~i~~~~~~~~i-ilVGnK~D  116 (193)
T cd04118          71 YRGAKAAIVCYDLTDS---SSFERAKFWVKELQNLEEHCKI-YLCGTKSD  116 (193)
T ss_pred             HCCCCEEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCCE-EEEEECHH
T ss_conf             3477445788306987---9999899999999974899997-99977466


No 189
>PRK04311 selenocysteine synthase; Provisional
Probab=20.69  E-value=46  Score=12.68  Aligned_cols=14  Identities=21%  Similarity=0.074  Sum_probs=5.6

Q ss_pred             CHHHHHHHHHHHHH
Q ss_conf             89999999999852
Q gi|255764495|r  168 GQEQAHATSKLLRK  181 (309)
Q Consensus       168 ~~~q~~~l~~~L~~  181 (309)
                      +...+..|+..|..
T Consensus       327 DKltLaaLeaTL~~  340 (465)
T PRK04311        327 DKLTLAALEATLRL  340 (465)
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             99999999999999


No 190
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=20.61  E-value=49  Score=12.48  Aligned_cols=66  Identities=14%  Similarity=0.078  Sum_probs=36.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCC-CCCCCCHHHH-HHHHHHHH-HHCCCCCEEEEECCCCCCCCC
Q ss_conf             330899999999996269979999374-4448998999-99999998-618997189994588422220
Q gi|255764495|r   47 YFSKEVANLLINDILLHNVDHVSITGD-IVNFTCNREI-FTSTHWLR-SIGNPHDISIVPGNHDAYISG  112 (309)
Q Consensus        47 ~~~~~~l~~~~~~i~~~~pD~vvitGD-l~~~~~~~~~-~~~~~~~~-~l~~~~~v~~v~GNHD~~~~~  112 (309)
                      ....+..+++++.+.+.+.|+++.=== +++....... ....+.+. -+...+.+|..-=|=|.....
T Consensus        40 ~~avd~t~~vi~~Ai~~~ad~ii~HHplif~~~~~~~~~~~~~~~i~~li~~~I~ly~~HtnlD~~~~g  108 (250)
T COG0327          40 AVALDATLAVLDEAIELGADLLIVHHPLIFWPVKSLAIDGPKGKRIKALIQNDINLYAAHTNLDAHPEG  108 (250)
T ss_pred             EEHHHCCHHHHHHHHHCCCCEEEECCCHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCC
T ss_conf             132640698899998658688871582110577654454378899999986798599734563313465


No 191
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase; InterPro: IPR011821   Proteins in this entry are important in the interconversion of the sulphur-containing amino acids L-cysteine and L-methionine in bacteria. In bacteria, inorganic sulphur is reduced to sulphide, which is then used to displace the acetyl group of O-acetyl-L-serine to form the essential amino acid L-cysteine. Biosynthesis of L-methionine then occurs via the transsulphuration pathway which involves the sequential action of two pyridoxal 5'-phosphate (PLP) enzymes, cystathionine gamma-synthase (CGS) and cystathionine beta-lyase (CBL). Firstly CGS catalyses the formation of the intermediate cystathione from a homoserine ester and L-cysteine. This intermediate is then converted by CBL to L-homoserine, which is subsequently methylated by methionine synthase to form L-methionine. For more information see .   The CGS enzyme (P00935 from SWISSPROT) from Escherichia coli is, like other CGS enzymes, a homotetramer composed of two catalytically active dimers . The active site of each dimer is found at the interface between the monomers and involves residues from each monomer. Catalysis occurs by alpha,gamma-elimination/replacement reactions..
Probab=20.60  E-value=49  Score=12.47  Aligned_cols=81  Identities=16%  Similarity=0.228  Sum_probs=50.6

Q ss_pred             EECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             41114278854100022210001210000012330899999999996269979999374444899899999999998618
Q gi|255764495|r   15 ISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIG   94 (309)
Q Consensus        15 lSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~   94 (309)
                      ++=|||++.+++.+     |...-.+.=.|+.+-.+++++..++++ +.+.++||     |+.|..+.    .=++-.+.
T Consensus        23 VPPIyLSttY~F~g-----F~~PR~yDYsRsGNPTRd~l~~aLA~L-E~G~~AVv-----T~~GMsAI----~L~~~~lL   87 (383)
T TIGR02080        23 VPPIYLSTTYNFAG-----FNEPRAYDYSRSGNPTRDILQQALAEL-EGGAGAVV-----TNSGMSAI----DLVTTALL   87 (383)
T ss_pred             CCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCCCEE-----CCCHHHHH----HHHHHHEE
T ss_conf             58863566767556-----777987666889897565899999998-48998256-----68568988----76643120


Q ss_pred             CCCCEEEEECCCCCCCCC
Q ss_conf             997189994588422220
Q gi|255764495|r   95 NPHDISIVPGNHDAYISG  112 (309)
Q Consensus        95 ~~~~v~~v~GNHD~~~~~  112 (309)
                      .|-.+.++|  ||+|...
T Consensus        88 ~pdDLlvAP--HDCYGGt  103 (383)
T TIGR02080        88 GPDDLLVAP--HDCYGGT  103 (383)
T ss_pred             CCCCEEEEC--CCCCCCH
T ss_conf             789768804--3267704


No 192
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.52  E-value=49  Score=12.46  Aligned_cols=40  Identities=8%  Similarity=-0.011  Sum_probs=17.9

Q ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             999999962699799993744448998999999999986189
Q gi|255764495|r   54 NLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGN   95 (309)
Q Consensus        54 ~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~   95 (309)
                      +.+++.+.++++|+|.++.=..  .....+....+.+++...
T Consensus        40 e~~~~~a~e~~ad~i~vSsl~g--~~~~~~~~l~~~L~e~G~   79 (128)
T cd02072          40 EEFIDAAIETDADAILVSSLYG--HGEIDCKGLREKCDEAGL   79 (128)
T ss_pred             HHHHHHHHHCCCCEEEECCCCC--CCCHHHHHHHHHHHHCCC
T ss_conf             9999999873999999823202--562489999999996799


No 193
>CHL00101 trpG anthranilate synthase component 2
Probab=20.47  E-value=50  Score=12.46  Aligned_cols=12  Identities=25%  Similarity=0.166  Sum_probs=4.8

Q ss_pred             HHCCCCEEEECC
Q ss_conf             626997999937
Q gi|255764495|r   61 LLHNVDHVSITG   72 (309)
Q Consensus        61 ~~~~pD~vvitG   72 (309)
                      .+.+||.||++|
T Consensus        40 ~~~~p~gIILS~   51 (190)
T CHL00101         40 KNLNPRHIIISP   51 (190)
T ss_pred             HHCCCCEEEECC
T ss_conf             707979899979


No 194
>pfam00551 Formyl_trans_N Formyl transferase. This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.
Probab=20.04  E-value=51  Score=12.40  Aligned_cols=13  Identities=31%  Similarity=0.299  Sum_probs=7.6

Q ss_pred             CCCEEEEECCCCC
Q ss_conf             9718999458842
Q gi|255764495|r   96 PHDISIVPGNHDA  108 (309)
Q Consensus        96 ~~~v~~v~GNHD~  108 (309)
                      +..+..|..|++.
T Consensus        27 ~~~I~~Visn~~~   39 (181)
T pfam00551        27 EVEIVAVVTNKDK   39 (181)
T ss_pred             CCEEEEEEECCCC
T ss_conf             9889999958957


Done!