Query gi|255764495|ref|YP_003065022.2| putative phosphoesterase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 309
No_of_seqs 192 out of 2664
Neff 9.8
Searched_HMMs 39220
Date Sun May 29 23:04:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764495.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11148 cyclic 3',5'-adenosin 100.0 3.8E-36 9.6E-41 256.7 26.8 239 6-287 12-262 (275)
2 COG1409 Icc Predicted phosphoh 100.0 2E-26 5E-31 192.7 21.8 230 10-276 1-237 (301)
3 PRK11340 phosphodiesterase Yae 99.9 4.4E-22 1.1E-26 164.1 18.0 168 10-237 49-216 (270)
4 PRK10966 exonuclease subunit S 99.9 6.3E-21 1.6E-25 156.5 19.7 246 10-277 1-271 (402)
5 KOG3770 consensus 99.9 5.5E-19 1.4E-23 143.7 20.9 264 8-276 137-446 (577)
6 COG0420 SbcD DNA repair exonuc 99.8 4.2E-19 1.1E-23 144.5 18.0 245 10-283 1-258 (390)
7 pfam00149 Metallophos Calcineu 99.8 9E-19 2.3E-23 142.3 16.0 185 10-234 1-186 (186)
8 KOG1432 consensus 99.8 1.6E-15 4.2E-20 120.9 22.4 264 6-286 50-360 (379)
9 KOG1378 consensus 99.8 3.8E-16 9.6E-21 125.1 19.1 163 64-236 174-346 (452)
10 COG2129 Predicted phosphoester 99.8 1.5E-15 3.9E-20 121.1 21.5 217 9-287 3-225 (226)
11 COG1408 Predicted phosphohydro 99.7 1.3E-15 3.2E-20 121.7 11.0 79 10-114 45-123 (284)
12 COG1768 Predicted phosphohydro 99.6 9.8E-15 2.5E-19 115.8 11.8 194 10-236 1-201 (230)
13 PRK09453 phosphodiesterase; Pr 99.6 4.1E-13 1E-17 105.1 18.2 155 10-271 1-161 (183)
14 PRK05340 UDP-2,3-diacylglucosa 99.6 5.7E-13 1.4E-17 104.2 17.0 77 10-111 1-85 (240)
15 TIGR00619 sbcd nuclease SbcCD, 99.5 3.3E-14 8.4E-19 112.3 6.5 101 11-118 2-107 (275)
16 TIGR01854 lipid_A_lpxH UDP-2,3 99.4 2.9E-12 7.5E-17 99.5 10.7 178 13-241 2-212 (241)
17 TIGR00040 yfcE phosphodiestera 99.4 1E-11 2.6E-16 95.9 13.2 163 10-275 1-165 (170)
18 COG0622 Predicted phosphoester 99.4 1.4E-10 3.6E-15 88.4 19.0 156 9-275 1-156 (172)
19 KOG2679 consensus 99.4 1.1E-10 2.9E-15 89.0 17.2 191 58-257 69-276 (336)
20 COG2908 Uncharacterized protei 99.4 1.9E-12 4.9E-17 100.7 7.5 198 14-253 2-214 (237)
21 PRK09418 bifunctional 2',3'-cy 99.3 2.3E-09 5.8E-14 80.5 20.6 247 6-282 36-326 (780)
22 PRK04036 DNA polymerase II sma 99.3 7.4E-11 1.9E-15 90.2 12.4 196 10-256 237-460 (497)
23 KOG2310 consensus 99.2 6.7E-09 1.7E-13 77.4 19.4 233 3-273 8-291 (646)
24 TIGR00583 mre11 DNA repair pro 99.2 6.9E-11 1.8E-15 90.5 8.1 236 9-273 3-290 (424)
25 PRK09558 ushA bifunctional UDP 99.2 3.3E-09 8.4E-14 79.4 16.5 207 7-235 32-258 (551)
26 PRK09419 bifunctional 2',3'-cy 99.2 5.2E-09 1.3E-13 78.1 16.4 262 6-290 39-343 (1260)
27 COG0737 UshA 5'-nucleotidase/2 99.1 9.7E-09 2.5E-13 76.3 15.9 228 6-253 23-267 (517)
28 PRK11907 bifunctional 2',3'-cy 99.1 1.4E-07 3.5E-12 68.7 19.4 256 6-288 112-415 (810)
29 pfam09423 PhoD PhoD-like phosp 98.9 8.8E-07 2.2E-11 63.5 19.1 196 60-257 128-405 (450)
30 PRK09419 bifunctional 2',3'-cy 98.9 6E-07 1.5E-11 64.5 17.5 205 6-253 662-916 (1260)
31 COG1311 HYS2 Archaeal DNA poly 98.9 1.1E-07 2.9E-12 69.3 13.6 186 10-241 226-437 (481)
32 COG4186 Predicted phosphoester 98.9 1.5E-07 3.9E-12 68.4 14.2 146 8-234 2-148 (186)
33 KOG3662 consensus 98.7 1.9E-06 4.9E-11 61.2 13.9 95 7-112 46-147 (410)
34 PRK09420 cpdB bifunctional 2', 98.5 1.5E-05 3.9E-10 55.3 15.4 208 67-287 1-248 (578)
35 COG1407 Predicted ICC-like pho 98.5 6.4E-07 1.6E-11 64.3 8.0 90 10-111 20-112 (235)
36 PHA02239 putative protein phos 98.5 5.3E-07 1.4E-11 64.9 7.4 71 10-110 1-74 (235)
37 TIGR01390 CycNucDiestase 2',3' 98.5 2E-05 5.1E-10 54.5 14.7 263 10-291 3-307 (634)
38 KOG3947 consensus 98.3 2.1E-05 5.4E-10 54.3 11.8 167 66-240 84-270 (305)
39 PRK09968 serine/threonine-spec 98.2 2.9E-05 7.5E-10 53.4 11.3 66 11-110 16-82 (218)
40 PRK13625 bis(5'-nucleosyl)-tet 98.2 5.1E-06 1.3E-10 58.4 6.6 70 10-109 1-79 (245)
41 PRK11439 pphA serine/threonine 98.1 9.5E-06 2.4E-10 56.6 6.2 70 3-110 14-84 (218)
42 PRK00166 apaH diadenosine tetr 98.0 1.3E-05 3.4E-10 55.7 6.2 68 9-109 1-69 (275)
43 TIGR00024 SbcD_rel_arch phosph 98.0 1E-05 2.6E-10 56.4 5.5 86 11-111 16-114 (243)
44 TIGR01530 nadN NAD nucleotidas 97.8 0.0019 4.9E-08 41.5 14.4 190 10-233 1-217 (550)
45 pfam04042 DNA_pol_E_B DNA poly 97.6 0.0016 4.1E-08 42.0 10.7 76 12-110 1-89 (205)
46 KOG4419 consensus 97.5 0.0024 6.2E-08 40.8 10.5 205 10-239 43-274 (602)
47 KOG2863 consensus 97.4 0.0031 7.9E-08 40.1 10.7 176 57-245 20-242 (456)
48 COG3540 PhoD Phosphodiesterase 97.4 0.0058 1.5E-07 38.3 12.0 183 56-240 160-424 (522)
49 cd00144 PP2Ac Protein phosphat 97.2 0.02 5E-07 34.8 14.4 198 65-276 55-262 (269)
50 COG5555 Cytolysin, a secreted 96.8 0.002 5.2E-08 41.3 4.7 165 65-234 127-334 (392)
51 KOG3325 consensus 96.8 0.035 9E-07 33.2 11.0 97 186-298 78-178 (183)
52 smart00156 PP2Ac Protein phosp 96.4 0.077 2E-06 30.9 12.4 197 66-277 56-261 (271)
53 PTZ00244 serine/threonine-prot 96.0 0.12 3.1E-06 29.7 12.0 196 66-276 80-284 (294)
54 PTZ00239 serine/threonine prot 96.0 0.13 3.2E-06 29.5 12.6 47 66-112 71-117 (303)
55 KOG0374 consensus 95.4 0.16 4E-06 28.9 8.4 198 65-276 86-293 (331)
56 pfam06874 FBPase_2 Firmicute f 95.2 0.014 3.5E-07 35.9 2.6 56 52-112 172-227 (641)
57 smart00854 PGA_cap Bacterial c 95.1 0.26 6.6E-06 27.5 16.9 196 48-253 18-234 (239)
58 TIGR00668 apaH bis(5'-nucleosy 94.6 0.032 8.2E-07 33.4 3.1 56 51-110 14-70 (280)
59 pfam09587 PGA_cap Bacterial ca 92.9 0.68 1.7E-05 24.7 17.1 216 11-253 1-232 (237)
60 COG1692 Calcineurin-like phosp 92.7 0.72 1.8E-05 24.5 19.7 164 52-237 18-183 (266)
61 PRK10425 DNase TatD; Provision 92.0 0.89 2.3E-05 24.0 11.7 127 52-221 16-142 (258)
62 PRK09982 universal stress prot 91.8 0.93 2.4E-05 23.8 9.8 110 67-233 5-114 (142)
63 COG3855 Fbp Uncharacterized pr 91.4 0.2 5.2E-06 28.2 3.2 54 54-112 180-233 (648)
64 KOG0371 consensus 91.0 0.84 2.1E-05 24.1 6.0 57 59-117 80-139 (319)
65 PTZ00235 DNA polymerase epsilo 90.0 1.4 3.5E-05 22.7 7.6 75 11-109 29-122 (307)
66 PRK04286 hypothetical protein; 89.2 1.2 3.1E-05 23.1 5.6 63 165-235 188-252 (294)
67 TIGR02477 PFKA_PPi diphosphate 87.6 2 5E-05 21.7 7.0 62 42-107 146-208 (566)
68 KOG3818 consensus 87.5 2 5.1E-05 21.6 7.3 83 4-112 279-372 (525)
69 TIGR00486 TIGR00486 conserved 87.5 1.7 4.2E-05 22.2 5.4 64 48-111 52-118 (325)
70 KOG0372 consensus 84.8 2.3 5.8E-05 21.3 5.0 47 66-112 71-117 (303)
71 cd01825 SGNH_hydrolase_peri1 S 84.6 2.7 7E-05 20.7 5.3 98 11-109 1-108 (189)
72 COG1168 MalY Bifunctional PLP- 84.5 2.5 6.4E-05 21.0 5.1 92 172-271 147-247 (388)
73 cd01310 TatD_DNAse TatD like p 77.2 4.9 0.00013 19.0 13.6 128 52-222 16-143 (251)
74 KOG4184 consensus 76.6 4.2 0.00011 19.5 4.0 49 46-94 220-270 (478)
75 TIGR01422 phosphonatase phosph 74.8 5.7 0.00015 18.6 4.9 44 48-91 122-167 (199)
76 TIGR02855 spore_yabG sporulati 73.8 3 7.6E-05 20.5 2.7 15 282-296 248-262 (292)
77 COG2843 PgsA Putative enzyme o 73.0 6.3 0.00016 18.4 8.5 76 172-252 210-285 (372)
78 TIGR00920 2A060605 3-hydroxy-3 72.7 4.4 0.00011 19.4 3.3 69 3-108 692-761 (988)
79 TIGR00010 TIGR00010 hydrolase, 72.6 6.4 0.00016 18.3 12.8 137 52-228 19-165 (269)
80 KOG0373 consensus 70.0 7.3 0.00019 17.9 5.1 47 64-112 71-120 (306)
81 TIGR01368 CPSaseIIsmall carbam 69.7 6.1 0.00015 18.5 3.5 20 56-75 124-144 (383)
82 PRK10116 universal stress prot 68.2 8 0.0002 17.7 6.3 37 67-104 5-41 (142)
83 PRK05421 hypothetical protein; 67.6 8.2 0.00021 17.6 5.5 53 169-232 158-210 (254)
84 TIGR02961 allantoicase allanto 65.8 6.3 0.00016 18.3 2.9 16 272-287 178-193 (376)
85 TIGR00504 pyro_pdase pyrrolido 65.4 7.2 0.00018 18.0 3.2 29 47-75 43-71 (220)
86 COG2248 Predicted hydrolase (m 61.2 11 0.00027 16.8 6.0 63 165-235 187-252 (304)
87 cd01985 ETF The electron trans 60.8 11 0.00028 16.8 5.0 52 174-233 51-102 (181)
88 KOG0376 consensus 59.6 11 0.00029 16.7 7.9 189 67-277 244-448 (476)
89 cd07366 3MGA_Dioxygenase Subun 57.7 10 0.00026 17.0 2.8 27 47-73 69-95 (328)
90 PRK13363 protocatechuate 4,5-d 56.9 9.8 0.00025 17.1 2.6 26 48-73 72-97 (335)
91 pfam02350 Epimerase_2 UDP-N-ac 55.3 13 0.00034 16.2 5.4 48 50-105 53-100 (346)
92 TIGR02539 SepCysS Sep-tRNA:Cys 54.8 14 0.00035 16.1 4.7 50 174-229 133-185 (381)
93 TIGR02329 propionate_PrpR prop 54.8 14 0.00035 16.1 3.1 45 212-256 329-391 (658)
94 pfam01026 TatD_DNase TatD rela 54.5 14 0.00035 16.1 14.4 131 53-222 16-146 (255)
95 KOG2732 consensus 53.7 14 0.00036 16.0 6.4 173 65-256 218-414 (435)
96 pfam01784 NIF3 NIF3 (NGG1p int 53.1 15 0.00037 16.0 5.2 62 50-111 39-103 (238)
97 PRK11449 putative deoxyribonuc 52.8 15 0.00037 15.9 10.7 130 52-222 20-149 (258)
98 TIGR00639 PurN phosphoribosylg 51.4 15 0.00037 16.0 2.8 14 53-66 14-29 (215)
99 cd00758 MoCF_BD MoCF_BD: molyb 50.5 16 0.00041 15.7 4.9 11 65-75 59-69 (133)
100 TIGR03568 NeuC_NnaA UDP-N-acet 50.4 16 0.00041 15.7 5.9 25 51-75 80-104 (365)
101 COG0381 WecB UDP-N-acetylgluco 49.9 16 0.00042 15.6 3.3 28 48-75 76-103 (383)
102 KOG0375 consensus 48.2 16 0.0004 15.8 2.5 19 92-110 142-160 (517)
103 pfam07819 PGAP1 PGAP1-like pro 46.6 18 0.00047 15.3 3.6 16 95-110 3-18 (225)
104 cd02991 UAS_ETEA UAS family, E 46.6 18 0.00047 15.3 3.7 45 176-220 7-51 (116)
105 PRK13670 hypothetical protein; 46.4 18 0.00047 15.3 4.1 27 57-83 21-50 (390)
106 PRK13671 hypothetical protein; 46.3 18 0.00047 15.3 4.1 32 57-88 20-54 (298)
107 COG0434 SgcQ Predicted TIM-bar 45.5 19 0.00049 15.2 4.7 59 48-107 28-97 (263)
108 cd02065 B12-binding_like B12 b 43.2 21 0.00053 15.0 5.6 52 53-108 39-90 (125)
109 pfam03437 BtpA BtpA family. Th 42.2 21 0.00054 14.9 5.5 72 15-102 6-88 (254)
110 PRK10834 hypothetical protein; 42.2 21 0.00054 14.9 5.0 54 43-97 60-113 (239)
111 COG0084 TatD Mg-dependent DNas 41.5 22 0.00056 14.8 13.6 138 53-231 19-158 (256)
112 COG3931 Predicted N-formylglut 40.9 14 0.00035 16.1 1.3 19 98-116 101-119 (263)
113 TIGR00633 xth exodeoxyribonucl 40.2 23 0.00058 14.7 3.2 22 49-70 11-34 (279)
114 KOG2476 consensus 39.6 23 0.0006 14.6 12.6 164 52-231 21-196 (528)
115 pfam08413 Metallophos_C Calcin 39.5 23 0.0006 14.6 3.0 32 245-281 2-33 (38)
116 cd03522 MoeA_like MoeA_like. T 39.2 24 0.0006 14.6 2.8 49 212-260 182-235 (312)
117 TIGR01307 pgm_bpd_ind 2,3-bisp 38.8 24 0.00061 14.5 4.6 27 212-239 435-461 (529)
118 PRK10799 putative hydrolase-ox 37.2 25 0.00065 14.4 4.5 62 48-109 40-103 (247)
119 cd00765 Pyrophosphate_PFK Phos 36.9 26 0.00066 14.3 7.1 59 41-103 143-202 (550)
120 pfam05636 DUF795 Protein of un 36.8 26 0.00066 14.3 4.1 27 57-83 21-50 (389)
121 cd03786 GT1_UDP-GlcNAc_2-Epime 35.8 27 0.00068 14.2 5.9 27 50-76 74-100 (363)
122 KOG1099 consensus 35.7 27 0.00069 14.2 5.3 11 67-77 91-101 (294)
123 PRK13195 pyrrolidone-carboxyla 35.3 27 0.00069 14.2 3.2 27 48-74 45-71 (222)
124 PRK09275 aspartate aminotransf 34.3 28 0.00072 14.1 3.6 49 177-228 236-284 (531)
125 KOG0092 consensus 34.2 28 0.00072 14.1 4.8 42 63-107 76-120 (200)
126 cd02172 RfaE_N RfaE is a prote 34.1 28 0.00072 14.1 5.0 17 216-232 81-97 (143)
127 PRK11930 putative bifunctional 32.9 30 0.00076 13.9 5.6 50 43-92 338-391 (824)
128 PRK05647 purN phosphoribosylgl 32.0 31 0.00078 13.8 2.9 11 53-63 15-25 (200)
129 PRK13539 cytochrome c biogenes 31.8 31 0.00079 13.8 3.4 30 168-197 158-187 (206)
130 TIGR02471 sucr_syn_bact_C sucr 31.4 24 0.00061 14.5 1.3 41 50-98 15-59 (241)
131 COG0123 AcuC Deacetylases, inc 31.2 32 0.00081 13.7 6.1 14 214-227 231-244 (340)
132 pfam05582 Peptidase_U57 YabG p 30.4 33 0.00083 13.7 5.5 16 170-185 141-156 (287)
133 PRK07085 diphosphate--fructose 29.9 33 0.00085 13.6 6.7 60 42-105 144-204 (557)
134 pfam08497 Radical_SAM_N Radica 28.8 35 0.00089 13.5 3.8 48 63-111 15-85 (298)
135 COG2039 Pcp Pyrrolidone-carbox 28.7 35 0.00089 13.5 3.2 28 48-75 44-71 (207)
136 COG4607 CeuA ABC-type enteroch 28.4 35 0.0009 13.4 2.3 22 52-73 106-127 (320)
137 PRK13193 pyrrolidone-carboxyla 28.3 35 0.0009 13.4 3.3 28 48-75 44-71 (201)
138 COG0299 PurN Folate-dependent 27.6 36 0.00093 13.3 3.7 18 56-73 71-88 (200)
139 pfam06925 MGDG_synth Monogalac 27.5 37 0.00093 13.3 2.9 28 54-81 6-34 (169)
140 cd00887 MoeA MoeA family. Memb 27.2 37 0.00094 13.3 4.6 42 212-253 250-291 (394)
141 TIGR00195 exoDNase_III exodeox 26.8 38 0.00096 13.3 2.9 21 50-70 12-34 (281)
142 cd00363 PFK Phosphofructokinas 26.7 38 0.00096 13.2 6.3 56 49-108 77-133 (338)
143 PRK13196 pyrrolidone-carboxyla 26.1 39 0.00098 13.2 3.3 27 48-74 46-72 (212)
144 TIGR02082 metH methionine synt 26.1 39 0.00099 13.2 5.6 74 142-231 224-306 (1265)
145 cd06533 Glyco_transf_WecG_TagA 26.0 39 0.00099 13.2 6.4 16 49-64 31-46 (171)
146 pfam02310 B12-binding B12 bind 26.0 39 0.00099 13.2 6.1 21 54-74 41-61 (121)
147 COG2949 SanA Uncharacterized m 26.0 39 0.00099 13.2 4.7 35 44-78 73-107 (235)
148 pfam08981 consensus 25.8 39 0.001 13.1 6.2 26 46-71 7-32 (181)
149 PRK10360 DNA-binding transcrip 25.8 39 0.001 13.1 4.9 48 53-107 36-83 (196)
150 COG3981 Predicted acetyltransf 25.7 39 0.001 13.1 4.0 22 173-194 117-138 (174)
151 pfam02698 DUF218 DUF218 domain 25.4 40 0.001 13.1 5.3 47 51-97 17-63 (148)
152 TIGR02685 pter_reduc_Leis pter 25.3 40 0.001 13.1 3.3 33 46-78 32-65 (283)
153 TIGR02482 PFKA_ATP 6-phosphofr 25.3 40 0.001 13.1 6.0 51 49-108 76-127 (302)
154 cd07359 PCA_45_Doxase_B_like S 25.0 40 0.001 13.0 3.4 26 48-73 28-53 (271)
155 cd01820 PAF_acetylesterase_lik 25.0 40 0.001 13.0 5.6 27 51-78 19-46 (214)
156 PRK13307 bifunctional formalde 24.6 41 0.0011 13.0 4.8 12 245-256 330-341 (392)
157 cd06259 YdcF-like YdcF-like. Y 24.5 41 0.0011 13.0 5.4 48 49-96 19-66 (150)
158 cd01743 GATase1_Anthranilate_S 24.4 42 0.0011 13.0 4.7 12 60-71 38-49 (184)
159 PTZ00099 rab6; Provisional 24.4 42 0.0011 13.0 4.0 44 61-108 49-96 (176)
160 cd07033 TPP_PYR_DXS_TK_like Py 24.3 42 0.0011 13.0 4.0 26 54-79 4-29 (156)
161 TIGR02495 NrdG2 anaerobic ribo 24.2 42 0.0011 12.9 4.3 44 46-94 43-89 (220)
162 smart00594 UAS UAS domain. 24.2 42 0.0011 12.9 3.6 54 176-232 17-70 (122)
163 pfam10686 DUF2493 Protein of u 23.9 42 0.0011 12.9 3.5 41 50-94 17-57 (71)
164 TIGR01284 alt_nitrog_alph nitr 23.8 43 0.0011 12.9 4.6 48 210-267 394-441 (468)
165 cd02812 PcrB_like PcrB_like pr 23.8 43 0.0011 12.9 6.2 52 56-110 17-68 (219)
166 TIGR01264 tyr_amTase_E tyrosin 23.7 43 0.0011 12.9 7.4 104 169-276 160-272 (415)
167 PRK05670 anthranilate synthase 23.7 43 0.0011 12.9 4.9 14 58-71 37-50 (192)
168 COG3426 Butyrate kinase [Energ 23.3 44 0.0011 12.8 4.1 23 53-75 52-79 (358)
169 pfam04587 ADP_PFK_GK ADP-speci 23.2 44 0.0011 12.8 3.3 54 48-101 191-255 (444)
170 PRK13538 cytochrome c biogenes 23.2 44 0.0011 12.8 3.9 11 14-24 16-26 (204)
171 cd04121 Rab40 Rab40 subfamily. 22.9 44 0.0011 12.8 3.3 41 63-107 77-120 (189)
172 TIGR02817 adh_fam_1 zinc-bindi 22.6 45 0.0011 12.7 3.1 36 59-94 78-114 (338)
173 pfam03841 SelA L-seryl-tRNA se 22.5 41 0.001 13.0 1.1 18 166-183 243-260 (367)
174 TIGR02845 spore_V_AD stage V s 22.1 46 0.0012 12.7 4.1 86 160-258 195-283 (331)
175 TIGR01214 rmlD dTDP-4-dehydror 22.0 46 0.0012 12.7 2.6 66 47-112 43-116 (317)
176 TIGR01957 nuoB_fam NADH-quinon 22.0 46 0.0012 12.7 3.7 39 63-107 56-95 (146)
177 PRK00955 hypothetical protein; 21.9 46 0.0012 12.6 3.7 47 63-110 12-81 (599)
178 cd04124 RabL2 RabL2 subfamily. 21.8 47 0.0012 12.6 3.9 13 64-76 72-84 (161)
179 cd02067 B12-binding B12 bindin 21.7 47 0.0012 12.6 6.7 49 53-104 39-88 (119)
180 PRK09191 two-component respons 21.6 47 0.0012 12.6 5.3 18 211-228 171-188 (261)
181 TIGR02398 gluc_glyc_Psyn gluco 21.3 48 0.0012 12.6 1.9 15 188-202 160-174 (495)
182 TIGR02875 spore_0_A sporulatio 21.3 48 0.0012 12.6 2.6 20 55-76 39-58 (270)
183 PRK05637 anthranilate synthase 21.2 48 0.0012 12.6 4.0 14 59-72 39-52 (208)
184 KOG3873 consensus 21.1 48 0.0012 12.5 3.7 24 170-193 154-177 (422)
185 PRK13197 pyrrolidone-carboxyla 21.1 48 0.0012 12.5 3.2 24 49-72 46-69 (215)
186 PRK13194 pyrrolidone-carboxyla 21.0 48 0.0012 12.5 3.4 28 48-75 44-71 (204)
187 cd07372 2A5CPDO_B The beta sub 20.9 49 0.0012 12.5 3.3 21 51-71 37-57 (294)
188 cd04118 Rab24 Rab24 subfamily. 20.8 49 0.0012 12.5 4.4 43 62-108 71-116 (193)
189 PRK04311 selenocysteine syntha 20.7 46 0.0012 12.7 1.1 14 168-181 327-340 (465)
190 COG0327 Uncharacterized conser 20.6 49 0.0013 12.5 4.5 66 47-112 40-108 (250)
191 TIGR02080 O_succ_thio_ly O-suc 20.6 49 0.0013 12.5 12.1 81 15-112 23-103 (383)
192 cd02072 Glm_B12_BD B12 binding 20.5 49 0.0013 12.5 6.4 40 54-95 40-79 (128)
193 CHL00101 trpG anthranilate syn 20.5 50 0.0013 12.5 4.4 12 61-72 40-51 (190)
194 pfam00551 Formyl_trans_N Formy 20.0 51 0.0013 12.4 2.6 13 96-108 27-39 (181)
No 1
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=100.00 E-value=3.8e-36 Score=256.66 Aligned_cols=239 Identities=14% Similarity=0.128 Sum_probs=182.0
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCC--CCEEEECCCCCCCCCHHHH
Q ss_conf 55327889941114278854100022210001210000012330899999999996269--9799993744448998999
Q gi|255764495|r 6 TTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHN--VDHVSITGDIVNFTCNREI 83 (309)
Q Consensus 6 ~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~--pD~vvitGDl~~~~~~~~~ 83 (309)
+..| ||+||||+||...+... .......+.|+++++.+++.. ||+||+||||++.|.+++|
T Consensus 12 ~~~m-kiiQISD~HL~~~~~~~----------------~~g~dt~~~l~~vl~~i~~~~~~~D~viiTGDLs~dgs~esY 74 (275)
T PRK11148 12 EARV-RILQITDTHLFADEHET----------------LLGVNTWESYQAVLEAIRAEQHEFDLIVATGDLAQDHSAEAY 74 (275)
T ss_pred CCCE-EEEEEECCCCCCCCCCC----------------CCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHH
T ss_conf 9877-99998367758788763----------------527698999999999998459998899976402589999999
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 99999998618997189994588422220356766432454313444445556212799719879998328888887554
Q gi|255764495|r 84 FTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSA 163 (309)
Q Consensus 84 ~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~ 163 (309)
+.+.++++++ +.|++++|||||... .+ ...+.... ......+...+++.+++|||.... ..
T Consensus 75 ~~l~~~L~~l--~~P~~~lPGNHD~~~--~m-------~~~l~~~~-----~~~~~~v~~~~~w~iI~LDS~~~g---~~ 135 (275)
T PRK11148 75 QHFAEGIAPL--RKPCVWLPGNHDFQP--AM-------YSALQDAG-----ISPAKHVLIGEHWQILLLDSQVFG---VP 135 (275)
T ss_pred HHHHHHHHHC--CCCEEEECCCCCCHH--HH-------HHHHCCCC-----CCCCCEEEECCCEEEEEEECCCCC---CC
T ss_conf 9999999726--999899588762389--99-------98603266-----786532796498799999799999---77
Q ss_pred CCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCC--CCCCHHHHHHHHHHC-CCEEEEECCCCCCEEEEEE
Q ss_conf 7600899999999998524336970899983768887643110--127978999999874-9819999876753247871
Q gi|255764495|r 164 NGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYN--RMFGIQRFQKMIWHE-GADLILHGHTHLNSLHWIK 240 (309)
Q Consensus 164 ~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~--~~~~~~~l~~~l~~~-~v~lvl~GH~H~~~~~~~~ 240 (309)
.|.++++|++||++.|++.+. ++.+|++||||+.....|.+ .+.|+++|.++++++ +|..|+|||+|+.....+.
T Consensus 136 ~G~L~~~qL~wL~~~L~~~~~--~~~lV~lHHpPv~ig~~wmD~~~L~N~~~l~~il~~~~~Vk~v~~GHvHq~~~~~~~ 213 (275)
T PRK11148 136 HGELSEFQLEWLERKLADAPE--RHTLVLLHHHPLPAGSAWLDQHSLRNAHELAQVLAKFPNVKAILCGHIHQELDLDWN 213 (275)
T ss_pred CCEECHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHEEC
T ss_conf 708399999999999974789--987999927984579832001118799999999974899049996265756770699
Q ss_pred CCCCCEEEEEECCCCCCCCCC-------CCCCCEEEEEEECCCCEEEEEEEEEE
Q ss_conf 699868999957623577888-------87785489999538983899999951
Q gi|255764495|r 241 NEKKLIPVVGIASASQKVHSN-------KPQASYNLFYIEKKNEYWTLEGKRYT 287 (309)
Q Consensus 241 ~~~~~~~~~~~~s~~~~~~~~-------~~~~~y~li~i~~~~~~~~v~~~r~~ 287 (309)
+ +++++|||+|..+... ...+||+.+++.++| .+.-.+.|..
T Consensus 214 g----i~~~~tPSTc~QF~p~s~~f~~d~~~PGyR~l~L~~dG-~~~t~V~Rv~ 262 (275)
T PRK11148 214 G----RRLLATPSTCVQFKPHCDNFTLDTIAPGWRELELHADG-SLETEVHRLA 262 (275)
T ss_pred C----EEEEECCCCCEEECCCCCCCCCCCCCCCEEEEEECCCC-CEEEEEEECC
T ss_conf 9----99997487211146799875404889970799974899-5898999826
No 2
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.96 E-value=2e-26 Score=192.73 Aligned_cols=230 Identities=22% Similarity=0.275 Sum_probs=159.2
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 78899411142788541000222100012100000123308999999999962699799993744448998999999999
Q gi|255764495|r 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHW 89 (309)
Q Consensus 10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~ 89 (309)
+||+||||+|+++ ........++++++.++..+||+||+||||++.|.+++++.+.++
T Consensus 1 ~~i~~isD~H~~~----------------------~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~~~~~~~~~~~~ 58 (301)
T COG1409 1 MRIAHISDLHLGA----------------------LGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGEPEEYRRLKEL 58 (301)
T ss_pred CEEEEEECCCCCC----------------------CCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 9689981688774----------------------556558999999997366799989988746566665899999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEC-CCEEEEEECCCCCCCCCCCCCEEC
Q ss_conf 9861899718999458842222035676643245431344444555621279971-987999832888888755476008
Q gi|255764495|r 90 LRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIR-NNIALIGCSTAIATPPFSANGYFG 168 (309)
Q Consensus 90 ~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~s~~~~~~~~~~g~~~ 168 (309)
++.+..+.|++++|||||.+...........+..+... ..... +++.++++|+.... ...|+++
T Consensus 59 l~~~~~~~~~~~vpGNHD~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~d~~~~~---~~~G~~~ 123 (301)
T COG1409 59 LARLELPAPVIVVPGNHDARVVNGEAFSDQFFNRYAVL------------VGACSSGGWRVIGLDSSVPG---VPLGRLG 123 (301)
T ss_pred HHHCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCHHH------------CCCCCCCCEEEEEECCCCCC---CCCCEEC
T ss_conf 97467788758638985454444322311014553010------------10223786699973156567---7687735
Q ss_pred HHHHHHHHHHHHHCCCCCC-EEEEEEECCCCCC-CCCCCCCCCCHHHHHHHHHHCC--CEEEEECCCCCC--EEEEEECC
Q ss_conf 9999999999852433697-0899983768887-6431101279789999998749--819999876753--24787169
Q gi|255764495|r 169 QEQAHATSKLLRKANKKGF-FRIIMMHHPPVLD-TSSLYNRMFGIQRFQKMIWHEG--ADLILHGHTHLN--SLHWIKNE 242 (309)
Q Consensus 169 ~~q~~~l~~~L~~~~~~~~-~~iv~~Hhpp~~~-~~~~~~~~~~~~~l~~~l~~~~--v~lvl~GH~H~~--~~~~~~~~ 242 (309)
..|+.|+++.|+....... ..++++|||+... .......+.++..+..++..++ ++++|+||.|.. ......+.
T Consensus 124 ~~q~~~l~~~l~~~~~~~~~~~v~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~ 203 (301)
T COG1409 124 AEQLDWLEEALAAAPERAKDTVVVLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLAAQTVYQLNGT 203 (301)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 88899999997752012564069984478777776401344324334456776447841499969744554112212674
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 9868999957623577888877854899995389
Q gi|255764495|r 243 KKLIPVVGIASASQKVHSNKPQASYNLFYIEKKN 276 (309)
Q Consensus 243 ~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~ 276 (309)
......+.+++++...........++.++++..+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (301)
T COG1409 204 RLSDLLVGAGPATCSQVFRGSATAFNTLDLDGPG 237 (301)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 2332120025643203356664321026760686
No 3
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.90 E-value=4.4e-22 Score=164.11 Aligned_cols=168 Identities=20% Similarity=0.226 Sum_probs=107.8
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 78899411142788541000222100012100000123308999999999962699799993744448998999999999
Q gi|255764495|r 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHW 89 (309)
Q Consensus 10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~ 89 (309)
+||+||||+|+|.. .....++.+++.+++++||+|+++||+++...+.++..+.+.
T Consensus 49 lrI~~lSDlH~g~~------------------------~~~~~l~~~v~~~n~~~PDlVv~tGD~vd~~~~~~~~~~~~~ 104 (270)
T PRK11340 49 FKILFLADLHYSRF------------------------VPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFSDV 104 (270)
T ss_pred CEEEEEECCCCCCC------------------------CCHHHHHHHHHHHHHCCCCEEEECCCEECCCCCHHHHHHHHH
T ss_conf 58999925668898------------------------898999999999871299999986763447772107999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEECH
Q ss_conf 98618997189994588422220356766432454313444445556212799719879998328888887554760089
Q gi|255764495|r 90 LRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQ 169 (309)
Q Consensus 90 ~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~ 169 (309)
+++|..+.|+|+|.||||.+.......... +.+....-.....+..........+.++|++..+.... ..
T Consensus 105 l~~L~~~~gvyaVlGNHD~~~~~~~~~~i~---~~l~~~Gi~vL~N~~~~i~~~~~~~~l~Gv~D~~~~~~-------~~ 174 (270)
T PRK11340 105 LSPLAECAPTFACFGNHDRPVGTEKNHLIG---ETLKSAGITVLFNQATVIATPNRQFELVGTGDLWAGQC-------KP 174 (270)
T ss_pred HHHCCCCCCEEEECCCCCCCCCCCCHHHHH---HHHHHCCCEEEECCEEEEEECCEEEEEEECCCHHHCCC-------CC
T ss_conf 874013388599737864224542069999---99997799892088299975993999996276465556-------67
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEE
Q ss_conf 99999999985243369708999837688876431101279789999998749819999876753247
Q gi|255764495|r 170 EQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLH 237 (309)
Q Consensus 170 ~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~ 237 (309)
. ....++.++|++.|.|-. .+.+.+.++|++||||+|..|+.
T Consensus 175 ~----------~~~~~~~p~IlL~H~P~~----------------~~~~~~~~~dL~LSGHTHGGQi~ 216 (270)
T PRK11340 175 P----------PASEANLPRLVLAHNPDS----------------KEVMRDEPWDLMLCGHTHGGQLR 216 (270)
T ss_pred C----------CCCCCCCCEEEEEECCCC----------------HHHCCCCCCCEEEEECCCCCEEE
T ss_conf 6----------121468986999818982----------------34435568557997237788798
No 4
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=99.89 E-value=6.3e-21 Score=156.53 Aligned_cols=246 Identities=18% Similarity=0.197 Sum_probs=128.1
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH--HHHHHH
Q ss_conf 788994111427885410002221000121000001233089999999999626997999937444489989--999999
Q gi|255764495|r 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNR--EIFTST 87 (309)
Q Consensus 10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~--~~~~~~ 87 (309)
-||+|+||+|||..-.. ..+.+....+|+++++.+.+++||+|+|+||+++.+.|. ..+.+.
T Consensus 1 MkiLHTSDWHLGk~l~g----------------~sr~~eq~~fL~~l~~~~~~e~vDavlIAGDifD~~~P~~~A~~l~~ 64 (402)
T PRK10966 1 MRILHTSDWHLGQNFYS----------------KSRAAEHQAFLDWLLEQAQEHQVDAIIVAGDIFDTGSPPSYARELYN 64 (402)
T ss_pred CCEEEHHHHHCCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 95076103343821489----------------78299999999999999998499999988755799999999999999
Q ss_pred HHHHHHCC-CCCEEEEECCCCCCCCCHHHHHH-HHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCC---CC
Q ss_conf 99986189-97189994588422220356766-432454313444445556212799719879998328888887---55
Q gi|255764495|r 88 HWLRSIGN-PHDISIVPGNHDAYISGAKEKSL-HAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPP---FS 162 (309)
Q Consensus 88 ~~~~~l~~-~~~v~~v~GNHD~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~---~~ 162 (309)
+++.+|.. .++++++.||||...+......+ ....-+..+.................+.+.++.+--....+. ..
T Consensus 65 ~fl~~l~~~~~~vvvIaGNHDS~~rL~~~~~ll~~~~~~v~~~~~~~~~~~~i~l~~~~G~~~~~~~alPyl~p~~~~~~ 144 (402)
T PRK10966 65 RFVVNLQQTGCQLVVLAGNHDSVATLNESRDLLAFLNTTVIASASDDLGHQVIILPRRDGTPGAVLCAIPFLRPRDVITS 144 (402)
T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHCCHHHHHHCCEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCCHHHHHHH
T ss_conf 99999996699689994798987776243657886786997035656666429985599877689997798998996532
Q ss_pred CCCEECHH-HH----------HHHHH---HHHHCCCCCCEEEEEEECCCCCCCCCCCCC---CCCHHHHH-HHHHHCCCE
Q ss_conf 47600899-99----------99999---985243369708999837688876431101---27978999-999874981
Q gi|255764495|r 163 ANGYFGQE-QA----------HATSK---LLRKANKKGFFRIIMMHHPPVLDTSSLYNR---MFGIQRFQ-KMIWHEGAD 224 (309)
Q Consensus 163 ~~g~~~~~-q~----------~~l~~---~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~---~~~~~~l~-~~l~~~~v~ 224 (309)
..|.-..+ +. ..+.+ .+......+.+.|++.|-.........+.+ .-+.+.+- +++ .+++
T Consensus 145 ~~g~~~~~~~~~l~~~i~~~~~~~~~~a~~~~~~~~~~~p~i~~~Hl~~~G~~~sdSeR~i~vGg~~~v~~~~f--~~~d 222 (402)
T PRK10966 145 QAGLSGIEKQQALQQAIADHYQQLYQLACELRDALGQPLPIIATGHLTTVGASKSDSVRDIYIGTLDAFPAQAF--PPAD 222 (402)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCHHHC--CCCC
T ss_conf 04777115899999999999999999999986311457756999730542776577624688878240568677--9878
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 99998767532478716998689999576235778888778548999953898
Q gi|255764495|r 225 LILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKNE 277 (309)
Q Consensus 225 lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~~ 277 (309)
++..||+|+++.. +....+.+.|+| ...++...+..+++.++++++++.
T Consensus 223 YvALGHlH~pQ~v---~~~~~irYSGSP-l~~sFsE~~~~K~v~lVd~~~~~~ 271 (402)
T PRK10966 223 YIALGHIHRAQKV---GGTEHIRYCGSP-IPLSFDELGKSKSVHLVEFDQGKL 271 (402)
T ss_pred EEECCCCCCCCCC---CCCCCEEECCCC-CCCCCCCCCCCCEEEEEEECCCCC
T ss_conf 7635776665606---899867976985-523533246765599999779984
No 5
>KOG3770 consensus
Probab=99.85 E-value=5.5e-19 Score=143.74 Aligned_cols=264 Identities=18% Similarity=0.145 Sum_probs=180.9
Q ss_pred CEEEEEEEECCCCCCCCCCCCCC---------------CCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCC--CCEEEE
Q ss_conf 32788994111427885410002---------------2210001210000012330899999999996269--979999
Q gi|255764495|r 8 IMFVLAHISDIHLSYSPSFFELS---------------PKRIIGLVNWHFNRKKYFSKEVANLLINDILLHN--VDHVSI 70 (309)
Q Consensus 8 ~m~ri~hlSDlHlg~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~--pD~vvi 70 (309)
..+|++||+|+|.-+........ ...-.++.-|-.++.+..+...++++++.|++.. +|+|+.
T Consensus 137 p~~rvlhltDiH~D~~Y~~gs~a~c~~p~ccr~s~~~p~~~~~~Ag~wG~y~~CD~P~~lies~L~~ike~~~~iD~I~w 216 (577)
T KOG3770 137 PTFRVLHLTDIHLDPDYSEGSDADCDCPMCCRNSDGTPSGTKVAAGPWGDYGKCDSPKRLIESALDHIKENHKDIDYIIW 216 (577)
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 74158985125557540247763446752113578888876566788887677888899999999999851899877997
Q ss_pred CCCCCCCCCH--------HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCH---------------HHHHHHHHHHHHCC
Q ss_conf 3744448998--------999999999986189971899945884222203---------------56766432454313
Q gi|255764495|r 71 TGDIVNFTCN--------REIFTSTHWLRSIGNPHDISIVPGNHDAYISGA---------------KEKSLHAWKDYITS 127 (309)
Q Consensus 71 tGDl~~~~~~--------~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~---------------~~~~~~~~~~~~~~ 127 (309)
|||+...-.. +......+.+.+.....|||...||||...... .+.....|..|...
T Consensus 217 TGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~~~~~wly~~~~~~W~~wlp~ 296 (577)
T KOG3770 217 TGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKRHSQLWLYKHLAGAWSTWLPA 296 (577)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCH
T ss_conf 18987664123449899999999999999868998546610268777574448987763001257899998651045898
Q ss_pred CCCCCCCCCCCEEEEECCCEEEEEECCCCCC---CCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 4444455562127997198799983288888---8755476008999999999985243369708999837688876431
Q gi|255764495|r 128 DTTCSTGKKLFPYLRIRNNIALIGCSTAIAT---PPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSL 204 (309)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~---~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~ 204 (309)
..........++.....++.++|.||+.... .+..........|++|+..+|..++.+|..+-++.|.||.......
T Consensus 297 e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae~~GekVhil~HIPpG~~~c~~ 376 (577)
T KOG3770 297 EAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAESAGEKVHILGHIPPGDGVCLE 376 (577)
T ss_pred HHHHHHHCCCEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHH
T ss_conf 88744442727998616872599850401155450243257895677669999999998669879999743898853312
Q ss_pred CCCCCCHHHHHHHHHHCC--CEEEEECCCCCCEEEEEECCCCCEEE-EEECCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 101279789999998749--81999987675324787169986899-9957623577888877854899995389
Q gi|255764495|r 205 YNRMFGIQRFQKMIWHEG--ADLILHGHTHLNSLHWIKNEKKLIPV-VGIASASQKVHSNKPQASYNLFYIEKKN 276 (309)
Q Consensus 205 ~~~~~~~~~l~~~l~~~~--v~lvl~GH~H~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~y~li~i~~~~ 276 (309)
.+ +..+-.++.++. +...+.||+|..++..+..+....|. +...+++..+ .....++|.+..+++..
T Consensus 377 ~w----s~~f~~iv~r~~~tI~gqf~GH~h~d~f~v~yde~~~~p~~v~~i~~svtt-y~~~~p~yr~y~~~~~~ 446 (577)
T KOG3770 377 GW----SINFYRIVNRFRSTIAGQFYGHTHIDEFRVFYDEETGHPIAVAYIGPSVTT-YYNKNPGYRIYAVDSTI 446 (577)
T ss_pred HH----HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEECCCCCEE-HHCCCCCCEECCCCCCC
T ss_conf 21----688999999998766642026676403799961456773011002554102-10048874102347655
No 6
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=99.84 E-value=4.2e-19 Score=144.50 Aligned_cols=245 Identities=18% Similarity=0.134 Sum_probs=128.7
Q ss_pred EEEEEEECCCCCC-CCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCH--HHHHHH
Q ss_conf 7889941114278-8541000222100012100000123308999999999962699799993744448998--999999
Q gi|255764495|r 10 FVLAHISDIHLSY-SPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCN--REIFTS 86 (309)
Q Consensus 10 ~ri~hlSDlHlg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~--~~~~~~ 86 (309)
.||+|+||+|||. .... ..+.......++.+++.+.++++|+||++||+++.+.| .....+
T Consensus 1 mkilHtSD~HLG~~~~~~----------------~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~ 64 (390)
T COG0420 1 MKILHTSDWHLGSKQLNL----------------PSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLF 64 (390)
T ss_pred CEEEEECCCCCCCCCCCC----------------CCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHH
T ss_conf 907996003678433567----------------1358999999999999999706999998155578899998999999
Q ss_pred HHHHHHHCC-CCCEEEEECCCCCCCCCHHHHHHH---HHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCC-C
Q ss_conf 999986189-971899945884222203567664---32454313444445556212799719879998328888887-5
Q gi|255764495|r 87 THWLRSIGN-PHDISIVPGNHDAYISGAKEKSLH---AWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPP-F 161 (309)
Q Consensus 87 ~~~~~~l~~-~~~v~~v~GNHD~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~-~ 161 (309)
.++++.|.. .+|||+++||||............ .......... .......+ ... ...+++.... .... .
T Consensus 65 ~~~l~~l~~~~Ipv~~I~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~-~~~~l~~~~~--~~~~~~ 138 (390)
T COG0420 65 LEALRRLKDAGIPVVVIAGNHDSPSRLSEASPLLLLNNLGLHGVVGR--LVHEIRPP-EIV-AAPWLIPGPD--PDVVFF 138 (390)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHCCCCEEECCC--CCCCCCCC-CCC-CCEEEEECCC--CCEEEE
T ss_conf 99999875469828997278986012643352466751685020464--30012455-334-5439960377--650576
Q ss_pred CCCCEECHHHHHHH--HHHHHHCCCCCCEEEEEEECCCC--CCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEE
Q ss_conf 54760089999999--99985243369708999837688--876431101279789999998749819999876753247
Q gi|255764495|r 162 SANGYFGQEQAHAT--SKLLRKANKKGFFRIIMMHHPPV--LDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLH 237 (309)
Q Consensus 162 ~~~g~~~~~q~~~l--~~~L~~~~~~~~~~iv~~Hhpp~--~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~ 237 (309)
.........+...+ ...+.....+..+.|++.|--.. .........+ +... .+.+...+.+++..||+|.++..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~~H~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~YvALGHiH~~~~~ 216 (390)
T COG0420 139 LGLNGLEKEQFELLLHKGLLSALDPDDDPSILVLHQSIDALTSGAERDLAL-GTVD-LSLLPKGGFDYVALGHIHKRQVI 216 (390)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCC-CCCC-CCCCCCCCCCEEECCCCCCCCEE
T ss_conf 123664177899987566665417656675663102121245677566521-3101-02266788556976888764000
Q ss_pred EEECCCCCEEEEEECCCC-CCCCCCCCCCCEEEEEEECCCCEEEEEE
Q ss_conf 871699868999957623-5778888778548999953898389999
Q gi|255764495|r 238 WIKNEKKLIPVVGIASAS-QKVHSNKPQASYNLFYIEKKNEYWTLEG 283 (309)
Q Consensus 238 ~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~y~li~i~~~~~~~~v~~ 283 (309)
.. ...+++..||.- ..+...+...++.+++++.+. .|.+..
T Consensus 217 ~~----~~~~i~y~GS~~~~~f~E~~~~k~~~~v~~~~~~-~~~~~~ 258 (390)
T COG0420 217 PK----EDPPIVYPGSPERYSFGEEGERKGVVLVEFSGGK-LWRFEE 258 (390)
T ss_pred CC----CCCEEEECCCCCEECHHHHCCCCCEEEEEEECCC-CEEEEC
T ss_conf 67----8870462898703140331665664899850796-115740
No 7
>pfam00149 Metallophos Calcineurin-like phosphoesterase. This family includes a diverse range of phosphoesterases, including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this superfamily centre around the metal chelating residues.
Probab=99.82 E-value=9e-19 Score=142.35 Aligned_cols=185 Identities=18% Similarity=0.122 Sum_probs=109.7
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 78899411142788541000222100012100000123308999999999962699799993744448998999999999
Q gi|255764495|r 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHW 89 (309)
Q Consensus 10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~ 89 (309)
+||+|+||+|++.... .....+.+.....+||+||++||+++.+....+.....+
T Consensus 1 ~~i~~isD~H~~~~~~-------------------------~~~~~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~ 55 (186)
T pfam00149 1 MRILVIGDLHGGLDDL-------------------------DLLLLLLELLGEPKPDLVLFLGDLVDRGPPSLEVLALLF 55 (186)
T ss_pred CEEEEEECCCCCHHHH-------------------------HHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 9799995896883679-------------------------999999997289999889983674446864189999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEECH
Q ss_conf 98618997189994588422220356766432454313444445556212799719879998328888887554760089
Q gi|255764495|r 90 LRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQ 169 (309)
Q Consensus 90 ~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~ 169 (309)
...+..+.|+++++||||........................... ........+ ...........
T Consensus 56 ~~~~~~~~~~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~----~~~~~~~~~~~ 120 (186)
T pfam00149 56 ALKLKAPGPVYLVRGNHDFDSGNSVLGFYLECAGLPYVLGNGDVS-----------NGTVEIVGL----SSLYGKGGGLV 120 (186)
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC-----------CCCCCCCCC----CCCCCCCCHHH
T ss_conf 886307985799617873334556650355402333334322122-----------343221244----43234687799
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCC-CCCCHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 9999999998524336970899983768887643110-1279789999998749819999876753
Q gi|255764495|r 170 EQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYN-RMFGIQRFQKMIWHEGADLILHGHTHLN 234 (309)
Q Consensus 170 ~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~-~~~~~~~l~~~l~~~~v~lvl~GH~H~~ 234 (309)
.+..+...............|+++|+|+......... ...+...+..++...+++++++||+|.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~i~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~GH~H~~ 186 (186)
T pfam00149 121 WEEFLELLDLLLLAALVDGKILLVHGPLSPSLDSGDDIYLFGEEALEDLLKDNGVDLVLRGHTHVP 186 (186)
T ss_pred HHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCEEEECCEECC
T ss_conf 999999985181115568859998799888655577405549999999999779989997958477
No 8
>KOG1432 consensus
Probab=99.76 E-value=1.6e-15 Score=120.90 Aligned_cols=264 Identities=12% Similarity=0.067 Sum_probs=143.3
Q ss_pred CCCEEEEEEEECCCCCCCC--CCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHH
Q ss_conf 5532788994111427885--41000222100012100000123308999999999962699799993744448998999
Q gi|255764495|r 6 TTIMFVLAHISDIHLSYSP--SFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREI 83 (309)
Q Consensus 6 ~~~m~ri~hlSDlHlg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~ 83 (309)
+...|||+.+||+|||... .-++..... ..+-.....-.-+-+-+..++||+||+|||++..-+. -
T Consensus 50 ~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~----------~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t--~ 117 (379)
T KOG1432 50 EDGTFKILQVADLHFGFGRETRCRDVLPSE----------EACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHST--Q 117 (379)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCCH----------HHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCC--H
T ss_conf 798168999504411468876435557423----------4453371178999999751389889995771145110--7
Q ss_pred HHHHHHHHHHC----CCCCEEEEECCCCCCCCCHHHHHHHH--HHHHHCCCC----CCCC-CC--CCCEEEE--------
Q ss_conf 99999998618----99718999458842222035676643--245431344----4445-55--6212799--------
Q gi|255764495|r 84 FTSTHWLRSIG----NPHDISIVPGNHDAYISGAKEKSLHA--WKDYITSDT----TCST-GK--KLFPYLR-------- 142 (309)
Q Consensus 84 ~~~~~~~~~l~----~~~~v~~v~GNHD~~~~~~~~~~~~~--~~~~~~~~~----~~~~-~~--~~~~~~~-------- 142 (309)
+.+..+++.++ ..+|..++.||||............. ..++..... +... .. +.+....
T Consensus 118 Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~ 197 (379)
T KOG1432 118 DAATSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRLQLMKFISKLPYSLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSEL 197 (379)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCC
T ss_conf 68999998750586538975898335564233579999999743897310379964331343124515788215788510
Q ss_pred -ECCCEEEEEECCCCCCC---CCCCCCEECHHHHHHHHHHHHHC-----CCCCCEEEEEEECCCCCCCCC----------
Q ss_conf -71987999832888888---75547600899999999998524-----336970899983768887643----------
Q gi|255764495|r 143 -IRNNIALIGCSTAIATP---PFSANGYFGQEQAHATSKLLRKA-----NKKGFFRIIMMHHPPVLDTSS---------- 203 (309)
Q Consensus 143 -~~~~~~~i~l~s~~~~~---~~~~~g~~~~~q~~~l~~~L~~~-----~~~~~~~iv~~Hhpp~~~~~~---------- 203 (309)
......++.|++..... -...+.++...|..|++.+-.+. ...+.+-+++.|.|.-....-
T Consensus 198 ~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~ 277 (379)
T KOG1432 198 ENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELESKTPLIGVF 277 (379)
T ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCEE
T ss_conf 36751369999347765466444574410131677876544431033576388874689972337874336778621112
Q ss_pred ---CCCCCCCHHHHHHHHH-HCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCC-CCCCCCEEEEEEECCCCE
Q ss_conf ---1101279789999998-74981999987675324787169986899995762357788-887785489999538983
Q gi|255764495|r 204 ---LYNRMFGIQRFQKMIW-HEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHS-NKPQASYNLFYIEKKNEY 278 (309)
Q Consensus 204 ---~~~~~~~~~~l~~~l~-~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~y~li~i~~~~~~ 278 (309)
......+.. +...|. +.+|+.|+|||.|.+..+-.. .+.++.+.+++++..-.. ++...+-++++++....
T Consensus 278 ~E~~~~~~~~sg-~~~~L~~r~~Vk~vf~GHdHvNDfC~~~--k~~~wlCygGgaGyggYg~~gw~Rr~Rv~e~d~~~~- 353 (379)
T KOG1432 278 QEGVSASKHNSG-FLTTLVNRGNVKGVFCGHDHVNDFCGEL--KGELWLCYGGGAGYGGYGIGGWERRARVFELDLNKD- 353 (379)
T ss_pred ECCCCCCCCCCH-HHHHHHHCCCCCEEEECCCCCCCEECCC--CCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCC-
T ss_conf 113113432627-7899876267535984565445600215--880799945877547767588544048998145604-
Q ss_pred EEEEEEEE
Q ss_conf 89999995
Q gi|255764495|r 279 WTLEGKRY 286 (309)
Q Consensus 279 ~~v~~~r~ 286 (309)
+++..++
T Consensus 354 -~IkTWKR 360 (379)
T KOG1432 354 -RIKTWKR 360 (379)
T ss_pred -CCCEEEE
T ss_conf -0113322
No 9
>KOG1378 consensus
Probab=99.76 E-value=3.8e-16 Score=125.09 Aligned_cols=163 Identities=15% Similarity=0.107 Sum_probs=116.8
Q ss_pred CCCEEEECCCCCCC-CCH-HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHC---CCCCCCCCCCCC
Q ss_conf 99799993744448-998-9999999999861899718999458842222035676643245431---344444555621
Q gi|255764495|r 64 NVDHVSITGDIVNF-TCN-REIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYIT---SDTTCSTGKKLF 138 (309)
Q Consensus 64 ~pD~vvitGDl~~~-~~~-~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 138 (309)
++|+|++.|||+-. +.. ..++...++++.+++..|..++.||||....... .|..+.. -...........
T Consensus 174 k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~vPymv~~GNHE~d~~~~~-----~F~~y~~Rf~mP~~~s~s~~~l 248 (452)
T KOG1378 174 KPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIASYVPYMVCSGNHEIDWPPQP-----CFVPYSARFNMPGNSSESDSNL 248 (452)
T ss_pred CCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC-----CCCCCCEEECCCCCCCCCCCCE
T ss_conf 88689982626522799851167788664345304854996366534577766-----6433210123688767777730
Q ss_pred EEEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCC-CCEEEEEEECCCCCCCC--CCCCCC--CCHHH
Q ss_conf 27997198799983288888875547600899999999998524336-97089998376888764--311012--79789
Q gi|255764495|r 139 PYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKK-GFFRIIMMHHPPVLDTS--SLYNRM--FGIQR 213 (309)
Q Consensus 139 ~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~-~~~~iv~~Hhpp~~~~~--~~~~~~--~~~~~ 213 (309)
.|....+++++|+|+|-... .-....+|-+||++.|+++..+ ..+.|+++|-|...... ..+.+. .-.+.
T Consensus 249 ~YSfd~G~vhfv~lsse~~~-----~~~~~~~QY~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~ 323 (452)
T KOG1378 249 YYSFDVGGVHFVVLSTETYY-----NFLKGTAQYQWLERDLASVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREG 323 (452)
T ss_pred EEEEEECCEEEEEEECCCCC-----CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCEECCCCHHHCCCCCCCHHHH
T ss_conf 69972063899997241024-----4444335899999999974656897399995566220687123103751012778
Q ss_pred HHHHHHHCCCEEEEECCCCCCEE
Q ss_conf 99999874981999987675324
Q gi|255764495|r 214 FQKMIWHEGADLILHGHTHLNSL 236 (309)
Q Consensus 214 l~~~l~~~~v~lvl~GH~H~~~~ 236 (309)
|.++|-+++||++|.||.|...+
T Consensus 324 LE~lf~~~~VDvvf~GHvH~YER 346 (452)
T KOG1378 324 LEPLFVKYKVDVVFWGHVHRYER 346 (452)
T ss_pred HHHHHHHHCCEEEEEECEECCCC
T ss_conf 99999872941999602031010
No 10
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.75 E-value=1.5e-15 Score=121.08 Aligned_cols=217 Identities=19% Similarity=0.227 Sum_probs=135.1
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC--CCCCHHHHHHH
Q ss_conf 2788994111427885410002221000121000001233089999999999626997999937444--48998999999
Q gi|255764495|r 9 MFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIV--NFTCNREIFTS 86 (309)
Q Consensus 9 m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~--~~~~~~~~~~~ 86 (309)
|.||+.+||+|-+ ...+.+++..+...++|+++++|||+ +.+........
T Consensus 3 ~mkil~vtDlHg~----------------------------~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~ 54 (226)
T COG2129 3 KMKILAVTDLHGS----------------------------EDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEEL 54 (226)
T ss_pred CCEEEEEECCCCC----------------------------HHHHHHHHHHHHHCCCCEEEEECCEEHHHCCCHHHHHHH
T ss_conf 4059998403333----------------------------578999999876036888999533521323863787766
Q ss_pred HHHHHHHC-CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCC
Q ss_conf 99998618-99718999458842222035676643245431344444555621279971987999832888888755476
Q gi|255764495|r 87 THWLRSIG-NPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANG 165 (309)
Q Consensus 87 ~~~~~~l~-~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g 165 (309)
.. ++.+. ...||++||||-|........ .. ... .....+...+++.++++--.-. .++....
T Consensus 55 ~~-~e~l~~~~~~v~avpGNcD~~~v~~~l----------~~-~~~----~v~~~v~~i~~~~~~G~Ggsn~-tp~nt~~ 117 (226)
T COG2129 55 NK-LEALKELGIPVLAVPGNCDPPEVIDVL----------KN-AGV----NVHGRVVEIGGYGFVGFGGSNP-TPFNTPR 117 (226)
T ss_pred HH-HHHHHHCCCEEEEECCCCCHHHHHHHH----------HH-CCC----CCCCCEEEECCCEEEEECCCCC-CCCCCCC
T ss_conf 67-888874597089975889837888999----------86-365----2013168855808997556289-9888800
Q ss_pred EECHHHH-HHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCC--CCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECC
Q ss_conf 0089999-9999998524336970899983768887643110--127978999999874981999987675324787169
Q gi|255764495|r 166 YFGQEQA-HATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYN--RMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNE 242 (309)
Q Consensus 166 ~~~~~q~-~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~--~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~ 242 (309)
.++++.+ ..++..++.... ...|+++|+||......... .-.++..+++++.+.++.+.+|||+|...-.. +
T Consensus 118 e~~E~~I~s~l~~~v~~~~~--~~~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d---~ 192 (226)
T COG2129 118 EFSEDEIYSKLKSLVKKADN--PVNILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGID---K 192 (226)
T ss_pred CCCHHHHHHHHHHHHHCCCC--CCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCC---C
T ss_conf 15799999989988751367--406999537998865467777654460999999997497568971000355633---3
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEE
Q ss_conf 986899995762357788887785489999538983899999951
Q gi|255764495|r 243 KKLIPVVGIASASQKVHSNKPQASYNLFYIEKKNEYWTLEGKRYT 287 (309)
Q Consensus 243 ~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~~~~~v~~~r~~ 287 (309)
-|...+++-++.+ ...|.+++++.. .|++++..
T Consensus 193 iG~TivVNPG~~~--------~g~yA~i~l~~~----~Vk~~~~~ 225 (226)
T COG2129 193 IGNTIVVNPGPLG--------EGRYALIELEKE----VVKLEQFS 225 (226)
T ss_pred CCCEEEECCCCCC--------CCEEEEEEECCC----EEEEEEEC
T ss_conf 5885898789766--------750799996286----89999821
No 11
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.66 E-value=1.3e-15 Score=121.65 Aligned_cols=79 Identities=23% Similarity=0.244 Sum_probs=62.3
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 78899411142788541000222100012100000123308999999999962699799993744448998999999999
Q gi|255764495|r 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHW 89 (309)
Q Consensus 10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~ 89 (309)
+||+|+||+|+... . ....+++..+..+.||+|+++||+++...+.......++
T Consensus 45 ~~iv~lSDlH~~~~-------------------------~-~~~~~~~~~i~~~~~DlivltGD~~~~~~~~~~~~~~~~ 98 (284)
T COG1408 45 LKIVQLSDLHSLPF-------------------------R-EEKLALLIAIANELPDLIVLTGDYVDGDRPPGVAALALF 98 (284)
T ss_pred EEEEEEEHHHHCHH-------------------------H-HHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCCHHHHHHH
T ss_conf 06998625554625-------------------------6-778999999873499989994011056777777899999
Q ss_pred HHHHCCCCCEEEEECCCCCCCCCHH
Q ss_conf 9861899718999458842222035
Q gi|255764495|r 90 LRSIGNPHDISIVPGNHDAYISGAK 114 (309)
Q Consensus 90 ~~~l~~~~~v~~v~GNHD~~~~~~~ 114 (309)
+..|..+.++++|.||||.......
T Consensus 99 L~~L~~~~gv~av~GNHD~~~~~~~ 123 (284)
T COG1408 99 LAKLKAPLGVFAVLGNHDYGVDRSN 123 (284)
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCC
T ss_conf 8755214787999447543540022
No 12
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.62 E-value=9.8e-15 Score=115.78 Aligned_cols=194 Identities=19% Similarity=0.174 Sum_probs=117.7
Q ss_pred EEEEEEECCCCCCC-CCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 78899411142788-54100022210001210000012330899999999996269979999374444899899999999
Q gi|255764495|r 10 FVLAHISDIHLSYS-PSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTH 88 (309)
Q Consensus 10 ~ri~hlSDlHlg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~ 88 (309)
-||.-|||+||... +...+.++....|+ .+++.+.....+..+ |.|++.|||++..+.+|...-..
T Consensus 1 M~iyaiaDLHLa~~~pKpM~vFGe~W~gh-----------~ekI~k~W~~~v~~e--DiVllpGDiSWaM~l~ea~~Dl~ 67 (230)
T COG1768 1 MRIYAIADLHLALGVPKPMEVFGEPWSGH-----------HEKIKKHWRSKVSPE--DIVLLPGDISWAMRLEEAEEDLR 67 (230)
T ss_pred CCEEEEEHHHHHHCCCCCEEECCCCCCCC-----------HHHHHHHHHHCCCHH--HEEEECCCCHHHEECHHHHHHHH
T ss_conf 94366323257537998613228754574-----------589999887227841--27884365245410534443145
Q ss_pred HHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEE---ECCCCC-CCCC-CC
Q ss_conf 998618997189994588422220356766432454313444445556212799719879998---328888-8875-54
Q gi|255764495|r 89 WLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIG---CSTAIA-TPPF-SA 163 (309)
Q Consensus 89 ~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---l~s~~~-~~~~-~~ 163 (309)
|+..| |-.-+.+.||||+++... .+......+...- .... ....++.++| ++|... ..++ ..
T Consensus 68 ~i~~L--PG~K~m~rGNHDYWw~s~-skl~n~lp~~l~~------~n~~----f~l~n~aI~G~RgW~s~~~~~e~~te~ 134 (230)
T COG1768 68 FIGDL--PGTKYMIRGNHDYWWSSI-SKLNNALPPILFY------LNNG----FELLNYAIVGVRGWDSPSFDSEPLTEQ 134 (230)
T ss_pred HHHCC--CCCEEEEECCCCCCCCHH-HHHHHHCCCHHHH------HCCC----EEEEEEEEEEEECCCCCCCCCCCCCHH
T ss_conf 65048--996798726776321028-9998655726756------5053----157427898741232787776756456
Q ss_pred CCEECHHHHHHHHH-HHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEE
Q ss_conf 76008999999999-98524336970899983768887643110127978999999874981999987675324
Q gi|255764495|r 164 NGYFGQEQAHATSK-LLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSL 236 (309)
Q Consensus 164 ~g~~~~~q~~~l~~-~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~ 236 (309)
..++-...+.+|+. ..+..+......|+|+|+||+..... ...+.++++++.|+..+.||.|....
T Consensus 135 Deki~~RE~~RLrlsa~a~l~k~~~~fivM~HYPP~s~~~t-------~~~~sevlee~rv~~~lyGHlHgv~~ 201 (230)
T COG1768 135 DEKIFLREIGRLRLSADAALPKGVSKFIVMTHYPPFSDDGT-------PGPFSEVLEEGRVSKCLYGHLHGVPR 201 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC-------CCCHHHHHHHCCEEEEEEEECCCCCC
T ss_conf 78899999999987798754667675999970699899999-------74168888626421577620157898
No 13
>PRK09453 phosphodiesterase; Provisional
Probab=99.59 E-value=4.1e-13 Score=105.13 Aligned_cols=155 Identities=20% Similarity=0.178 Sum_probs=96.5
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCH----HHH--
Q ss_conf 78899411142788541000222100012100000123308999999999962699799993744448998----999--
Q gi|255764495|r 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCN----REI-- 83 (309)
Q Consensus 10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~----~~~-- 83 (309)
-||+-|||+|- ....++++++.+++.++|.|+++||++..|.. +.|
T Consensus 1 MkI~vISDtHg----------------------------n~~ale~vl~~~~~~~vD~iih~GDiv~~Gp~~~~~~~y~p 52 (183)
T PRK09453 1 MKLGFASDIHG----------------------------SLPATEKALELFKQSGADWLVHLGDVLYHGPRNPLPEGYAP 52 (183)
T ss_pred CEEEEEEECCC----------------------------CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCH
T ss_conf 98999986789----------------------------96999999999875599899999862555777656444786
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 99999998618997189994588422220356766432454313444445556212799719879998328888887554
Q gi|255764495|r 84 FTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSA 163 (309)
Q Consensus 84 ~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~ 163 (309)
....+.++.+. .++++|.||||...... ... ++ ......++.
T Consensus 53 ~~v~e~l~~~~--~~~~~V~GN~D~~vd~~-----------~~~----------~~---~~~~~~~~~------------ 94 (183)
T PRK09453 53 KKVAELLNAYA--DKIIAVRGNCDSEVDQM-----------LLH----------FP---IMAPYQQVL------------ 94 (183)
T ss_pred HHHHHHHHHCC--CCEEEECCCCCHHHHHH-----------HHC----------CC---CCCCCEEEE------------
T ss_conf 99999998518--86899757881777465-----------335----------87---689826998------------
Q ss_pred CCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCC
Q ss_conf 76008999999999985243369708999837688876431101279789999998749819999876753247871699
Q gi|255764495|r 164 NGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEK 243 (309)
Q Consensus 164 ~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~ 243 (309)
- +..+|.++|-.+.. .+ ++.+..+++++++||+|.+....+.+
T Consensus 95 --------------------~-~g~ri~l~HG~~~~-----------~~---~~~~~~~~Dvvi~GHTH~p~~~~~~g-- 137 (183)
T PRK09453 95 --------------------L-EGKRLFLTHGHLYG-----------PE---NLPALHAGDVLVYGHTHIPVAEKQGG-- 137 (183)
T ss_pred --------------------E-CCEEEEEECCCCCC-----------HH---HHHHHCCCCEEEECCCCCCEEEEECC--
T ss_conf --------------------8-99899998788578-----------65---76652289999989756414799799--
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCEEEEE
Q ss_conf 8689999576235778888778548999
Q gi|255764495|r 244 KLIPVVGIASASQKVHSNKPQASYNLFY 271 (309)
Q Consensus 244 ~~~~~~~~~s~~~~~~~~~~~~~y~li~ 271 (309)
+.+++.||++..+. +.+++|.+++
T Consensus 138 --~l~iNPGSvg~PR~--g~p~syaIld 161 (183)
T PRK09453 138 --IILFNPGSVSLPKG--GYPASYGILD 161 (183)
T ss_pred --EEEEECCCCCCCCC--CCCCEEEEEE
T ss_conf --99996999877799--8989799998
No 14
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.57 E-value=5.7e-13 Score=104.18 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=51.3
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC--CCCEEEECCCCCCCCC-----HHH
Q ss_conf 788994111427885410002221000121000001233089999999999626--9979999374444899-----899
Q gi|255764495|r 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLH--NVDHVSITGDIVNFTC-----NRE 82 (309)
Q Consensus 10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~--~pD~vvitGDl~~~~~-----~~~ 82 (309)
.|.+.|||+|||+..+ ...+++++.++.. ..+.+++.|||++..- ..-
T Consensus 1 mr~~FISD~HL~~~~~-------------------------~~~~~l~~fL~~~~~~~~~LyllGDifD~W~g~~~~~~~ 55 (240)
T PRK05340 1 MPTLFISDLHLSPERP-------------------------AITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPF 55 (240)
T ss_pred CCEEEEEEECCCCCCH-------------------------HHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCCHH
T ss_conf 9669994008999983-------------------------799999999985315588899934577576067867879
Q ss_pred HHHHHHHHHHHCC-CCCEEEEECCCCCCCC
Q ss_conf 9999999986189-9718999458842222
Q gi|255764495|r 83 IFTSTHWLRSIGN-PHDISIVPGNHDAYIS 111 (309)
Q Consensus 83 ~~~~~~~~~~l~~-~~~v~~v~GNHD~~~~ 111 (309)
+......+.++.. ..+|++++||||.+..
T Consensus 56 ~~~v~~~L~~l~~~G~~V~yi~GNHDfllg 85 (240)
T PRK05340 56 AAEIAAALKALSDSGVPCYFMHGNRDFLLG 85 (240)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHH
T ss_conf 999999999998569869999168725535
No 15
>TIGR00619 sbcd nuclease SbcCD, D subunit; InterPro: IPR004593 All proteins in this family for which functions are known are double-stranded DNA exonuclease (as part of a complex with SbcC homologs). This complex functions in the initiation of recombination and recombinational repair and is particularly important in regulating the stability of DNA sections that can form secondary structures. This family is likely to be homologous to the MRE11 family.; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=99.51 E-value=3.3e-14 Score=112.31 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=71.7
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHH--HHHHHH
Q ss_conf 889941114278854100022210001210000012330899999999996269979999374444899899--999999
Q gi|255764495|r 11 VLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNRE--IFTSTH 88 (309)
Q Consensus 11 ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~--~~~~~~ 88 (309)
||+|+||+|+|..-.....++.+ | ..-+..+....|+.+++.+.++++|+||++||++|..+|.. -+.+.+
T Consensus 2 riLHtsDwHlGk~l~~GhinPat--G-----l~Sr~~e~~~~L~~l~~~~~~e~~Da~lvAGDvFD~~~P~~ea~~L~~~ 74 (275)
T TIGR00619 2 RILHTSDWHLGKTLEGGHINPAT--G-----LVSRLAEQKAFLDDLLEILKAEQVDALLVAGDVFDTANPPAEAQELFYA 74 (275)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCH--H-----HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 40013057513233787103002--2-----5548999999999999999738998899700007889887999999999
Q ss_pred HHHHHC---CCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 998618---997189994588422220356766
Q gi|255764495|r 89 WLRSIG---NPHDISIVPGNHDAYISGAKEKSL 118 (309)
Q Consensus 89 ~~~~l~---~~~~v~~v~GNHD~~~~~~~~~~~ 118 (309)
++..|. +++|+++++||||..........+
T Consensus 75 ~l~~L~~~~~R~p~Vvi~GNHD~~~~Ls~~~~L 107 (275)
T TIGR00619 75 FLLNLSDANPRLPIVVISGNHDSADRLSAAKKL 107 (275)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCHHHHCHHHHH
T ss_conf 999998538961278704788877861116778
No 16
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase; InterPro: IPR010138 This entry represents LpxH, or UDP-2,3-diacylglucosamine hydrolase (or pyrophosphatase), which is an essential enzyme in Escherichia coli that catalyses the fourth step in lipid A biosynthesis. This reaction involves pyrophosphate bond hydrolysis of the precursor UDP-2,3-diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate and UMP . Several Gram-negative bacteria have homologues of LpxH and/or LpxH2, while others have only distant orthologues of LpxH or LpxH2, or lack these enzymes altogether .; GO: 0016462 pyrophosphatase activity, 0009245 lipid A biosynthetic process, 0005737 cytoplasm.
Probab=99.41 E-value=2.9e-12 Score=99.47 Aligned_cols=178 Identities=17% Similarity=0.199 Sum_probs=96.6
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH--C-CCCEEEECCCCCCCC----CHHH-HH
Q ss_conf 99411142788541000222100012100000123308999999999962--6-997999937444489----9899-99
Q gi|255764495|r 13 AHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILL--H-NVDHVSITGDIVNFT----CNRE-IF 84 (309)
Q Consensus 13 ~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~--~-~pD~vvitGDl~~~~----~~~~-~~ 84 (309)
+.||||||++. .+++=+.+++.+++ . ++|++.|.|||++.+ .+.+ .+
T Consensus 2 lFISDLHL~~~-------------------------~P~iTa~Fl~FL~~~A~G~AdALYILGDLFeaWIGDD~~~~l~~ 56 (241)
T TIGR01854 2 LFISDLHLSEE-------------------------RPDITALFLDFLREEARGKADALYILGDLFEAWIGDDDPSALAR 56 (241)
T ss_pred CCCCCCCCCCC-------------------------CCHHHHHHHHHHHHHCCCCCHHHHHHCCHHHCEECCCCCCHHHH
T ss_conf 50013458824-------------------------60789999999875233400002210120001146897217999
Q ss_pred HHHHHHHHHC-CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC-EEEEEECCCCCCCCCC
Q ss_conf 9999998618-9971899945884222203567664324543134444455562127997198-7999832888888755
Q gi|255764495|r 85 TSTHWLRSIG-NPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNN-IALIGCSTAIATPPFS 162 (309)
Q Consensus 85 ~~~~~~~~l~-~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~s~~~~~~~~ 162 (309)
...+.++.+. ..+|||++.||-|......+-+ .-+--.-.+. ... ..+|. +.++--||.+.....+
T Consensus 57 ~va~~~r~vsd~GV~~YF~~GNRDFLiG~~Far---~aG~~LLPD~-~Vi--------dLYG~k~Ll~HGDtLCTdD~aY 124 (241)
T TIGR01854 57 SVAEAIRAVSDQGVPCYFMHGNRDFLIGKRFAR---EAGMTLLPDE-SVI--------DLYGQKVLLMHGDTLCTDDEAY 124 (241)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH---HHCCEECCCH-HHH--------HHCCCCEEEEECCCCCHHHHHH
T ss_conf 999999987328907984059851566689999---7088107862-465--------5548827995378630201899
Q ss_pred --------------CCCEECHHHHHHHHHHHHHCCCCC---CE------EEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf --------------476008999999999985243369---70------8999837688876431101279789999998
Q gi|255764495|r 163 --------------ANGYFGQEQAHATSKLLRKANKKG---FF------RIIMMHHPPVLDTSSLYNRMFGIQRFQKMIW 219 (309)
Q Consensus 163 --------------~~g~~~~~q~~~l~~~L~~~~~~~---~~------~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~ 219 (309)
-...++-.....|.+.++...... +. -.-+|= .+.+++.+.+.
T Consensus 125 q~FR~~vh~p~lQ~lFl~LPL~~R~~lA~k~R~~S~~~~~~K~~Gdqaqf~~ImD--------------V~~~~v~~~~~ 190 (241)
T TIGR01854 125 QAFRAKVHQPWLQRLFLLLPLAVRVKLARKIRAESRADKQEKSQGDQAQFVDIMD--------------VNPAEVAAVMR 190 (241)
T ss_pred HHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC--------------CCHHHHHHHHH
T ss_conf 9999985174899998624489999999999998889863310135224212430--------------58668899998
Q ss_pred HCCCEEEEECCCCCCEEEEEEC
Q ss_conf 7498199998767532478716
Q gi|255764495|r 220 HEGADLILHGHTHLNSLHWIKN 241 (309)
Q Consensus 220 ~~~v~lvl~GH~H~~~~~~~~~ 241 (309)
+|||+.++|||||+|..+.++-
T Consensus 191 ~~~v~~lIHGHTHRpAiH~~~~ 212 (241)
T TIGR01854 191 RYGVDLLIHGHTHRPAIHELQA 212 (241)
T ss_pred HCCCCEEECCCCCCCCCCEECC
T ss_conf 7386143067879862241205
No 17
>TIGR00040 yfcE phosphodiesterase, MJ0936 family; InterPro: IPR000979 Members of this largely uncharacterised family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterised archaeal putative phosphoesterases. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown to act on model phosphodiesterase substrates; a divalent cation was required. The following uncharacterised proteins are members of the fsmily: Escherichia coli hypothetical protein yfcE; Bacillus subtilis hypothetical protein ysnB; Mycoplasma genitalium and Mycoplasma pneumoniae hypothetical protein MG207; and M. jannaschii hypothetical proteins MJ0623 and MJ0936. .
Probab=99.41 E-value=1e-11 Score=95.92 Aligned_cols=163 Identities=19% Similarity=0.256 Sum_probs=97.7
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 788994111427885410002221000121000001233089999999999626-9979999374444899899999999
Q gi|255764495|r 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLH-NVDHVSITGDIVNFTCNREIFTSTH 88 (309)
Q Consensus 10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~-~pD~vvitGDl~~~~~~~~~~~~~~ 88 (309)
.||+-+||+|.- ....+...+..+.+ ++|+||++||++|.-... .. .+
T Consensus 1 m~il~~SDtH~~----------------------------~~A~e~~~~~~~~~~~~D~viH~GD~~N~~~s~--~~-l~ 49 (170)
T TIGR00040 1 MLILVISDTHIP----------------------------LRATELPVEAFDKESNVDLVIHAGDLTNSYKSP--FV-LK 49 (170)
T ss_pred CEEEEEEECCCC----------------------------CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCH--HH-HH
T ss_conf 958999620897----------------------------533157999998751887999921432355787--89-99
Q ss_pred HHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEEC
Q ss_conf 99861899718999458842222035676643245431344444555621279971987999832888888755476008
Q gi|255764495|r 89 WLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFG 168 (309)
Q Consensus 89 ~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~ 168 (309)
.+..+. .++++|.||+|....
T Consensus 50 ~~~~~~--~~~~aV~GN~D~~~~--------------------------------------------------------- 70 (170)
T TIGR00040 50 EFEDLA--AKVIAVRGNNDGKER--------------------------------------------------------- 70 (170)
T ss_pred HHHHCC--CCEEEEECCCCCCCC---------------------------------------------------------
T ss_conf 886313--858999678998200---------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEE
Q ss_conf 99999999998524336970899983768887643110127978999999874981999987675324787169986899
Q gi|255764495|r 169 QEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPV 248 (309)
Q Consensus 169 ~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~ 248 (309)
..+.+..+-+ -+...|+++|..-+.......+ ....|..+.++.++|++++||+|.+....+++ +..
T Consensus 71 ---~~~~~~~~~~---~e~~~f~~~hg~~~~~~~~~g~---~~~~L~~~~~~~~~DVli~GHTH~~~~e~~~~----~l~ 137 (170)
T TIGR00040 71 ---EELPEEEIFE---VEGIKFGLVHGDLVYPRGDLGH---WYLVLEYLAKELGVDVLIFGHTHIPVAEELRG----ILL 137 (170)
T ss_pred ---CCCCHHHHHH---CCCEEEEEEECCEEEECCCCCH---HHHHHHHHHHHCCCEEEEECCCCEEEEEECCC----EEE
T ss_conf ---0000344422---3880279985785642446771---13556767766284089988714000011276----888
Q ss_pred EEECCCCCCCCCC-CCCCCEEEEEEECC
Q ss_conf 9957623577888-87785489999538
Q gi|255764495|r 249 VGIASASQKVHSN-KPQASYNLFYIEKK 275 (309)
Q Consensus 249 ~~~~s~~~~~~~~-~~~~~y~li~i~~~ 275 (309)
++-||.+..+... ...++|..++++.+
T Consensus 138 ~NPGS~~~p~~~~~yt~~s~~~L~~~~~ 165 (170)
T TIGR00040 138 INPGSLTGPRNGRKYTTPSYAILEVDKD 165 (170)
T ss_pred EECCEEEECCCCCCCCCCEEEEEEECCE
T ss_conf 8188336425799624205899970860
No 18
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.40 E-value=1.4e-10 Score=88.38 Aligned_cols=156 Identities=21% Similarity=0.218 Sum_probs=99.4
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 27889941114278854100022210001210000012330899999999996269979999374444899899999999
Q gi|255764495|r 9 MFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTH 88 (309)
Q Consensus 9 m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~ 88 (309)
|.+|+-+||+|... ...+...+.....++|+|+++||.+......++...
T Consensus 1 ~m~ilviSDtH~~~----------------------------~~~~~~~~~~~~~~~d~vih~GD~~~~~~~~~l~~~-- 50 (172)
T COG0622 1 MMKILVISDTHGPL----------------------------RAIEKALKIFNLEKVDAVIHAGDSTSPFTLDALEGG-- 50 (172)
T ss_pred CCEEEEEECCCCCH----------------------------HHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHC--
T ss_conf 94899995467872----------------------------466699998510599999989975772337877411--
Q ss_pred HHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEEC
Q ss_conf 99861899718999458842222035676643245431344444555621279971987999832888888755476008
Q gi|255764495|r 89 WLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFG 168 (309)
Q Consensus 89 ~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~ 168 (309)
...++++|.||.|..... ...+
T Consensus 51 ------~~~~i~~V~GN~D~~~~~----------------------------------------------------~~~p 72 (172)
T COG0622 51 ------LAAKLIAVRGNCDGEVDQ----------------------------------------------------EELP 72 (172)
T ss_pred ------CCCCEEEEECCCCCCCCC----------------------------------------------------CCCC
T ss_conf ------366369997778875101----------------------------------------------------3599
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEE
Q ss_conf 99999999998524336970899983768887643110127978999999874981999987675324787169986899
Q gi|255764495|r 169 QEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPV 248 (309)
Q Consensus 169 ~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~ 248 (309)
+.+. . .-+..+|.++|-...... .+...+..+.+..++|++++||+|.+......+ +.+
T Consensus 73 ~~~~---------~-~~~g~ki~l~HGh~~~~~-------~~~~~l~~la~~~~~Dvli~GHTH~p~~~~~~~----i~~ 131 (172)
T COG0622 73 EELV---------L-EVGGVKIFLTHGHLYFVK-------TDLSLLEYLAKELGADVLIFGHTHKPVAEKVGG----ILL 131 (172)
T ss_pred HHHE---------E-EECCEEEEEECCCCCCCC-------CCHHHHHHHHHHCCCCEEEECCCCCCEEEEECC----EEE
T ss_conf 6586---------8-988899999889834667-------688899999974699899979867540899899----999
Q ss_pred EEECCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 995762357788887785489999538
Q gi|255764495|r 249 VGIASASQKVHSNKPQASYNLFYIEKK 275 (309)
Q Consensus 249 ~~~~s~~~~~~~~~~~~~y~li~i~~~ 275 (309)
++-||.+..+.. ..++|.+++++..
T Consensus 132 vNPGS~s~pr~~--~~~sy~il~~~~~ 156 (172)
T COG0622 132 VNPGSVSGPRGG--NPASYAILDVDNL 156 (172)
T ss_pred ECCCCCCCCCCC--CCCEEEEEECCCC
T ss_conf 849986777889--8757999984886
No 19
>KOG2679 consensus
Probab=99.38 E-value=1.1e-10 Score=89.04 Aligned_cols=191 Identities=16% Similarity=0.096 Sum_probs=98.2
Q ss_pred HHHHHCCCCEEEECCCCC-CCCCHHHHH-HHHHHHHHH----CCCCCEEEEECCCCCCCCCHHHHH--HHHH-HHHHCCC
Q ss_conf 999626997999937444-489989999-999999861----899718999458842222035676--6432-4543134
Q gi|255764495|r 58 NDILLHNVDHVSITGDIV-NFTCNREIF-TSTHWLRSI----GNPHDISIVPGNHDAYISGAKEKS--LHAW-KDYITSD 128 (309)
Q Consensus 58 ~~i~~~~pD~vvitGDl~-~~~~~~~~~-~~~~~~~~l----~~~~~v~~v~GNHD~~~~~~~~~~--~~~~-~~~~~~~ 128 (309)
+.......|+|+-+||-+ +.|...+.+ .+++-++.+ ....|.|.|.||||+...-..+-. ++.. .+|+...
T Consensus 69 ~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQkpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c~r 148 (336)
T KOG2679 69 EIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQKPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWICPR 148 (336)
T ss_pred HHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCEECCC
T ss_conf 67775264089963873100687877780477654240348210344332205765567522202087875063444350
Q ss_pred CCCCCCCCCCEEEEECCCEEEEEECCC------CC-CCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
Q ss_conf 444455562127997198799983288------88-88755476008999999999985243369708999837688876
Q gi|255764495|r 129 TTCSTGKKLFPYLRIRNNIALIGCSTA------IA-TPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDT 201 (309)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~i~l~s~------~~-~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~ 201 (309)
.-.... +..... .-+....+.++. .+ ..+......+...++.||+..|++..+ ++.||+.|||....+
T Consensus 149 sf~~~a-e~ve~f--~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~S~a--~wkiVvGHh~i~S~~ 223 (336)
T KOG2679 149 SFYVDA-EIVEMF--FVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALLSWLEVALKASRA--KWKIVVGHHPIKSAG 223 (336)
T ss_pred HHHHCC-EEEEEE--CCCCCCCHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC--CEEEEECCCCEEHHH
T ss_conf 776200-013331--112441201101025523223446780889999999999999987432--569994255100110
Q ss_pred CCC-CCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCC
Q ss_conf 431-10127978999999874981999987675324787169986899995762357
Q gi|255764495|r 202 SSL-YNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQK 257 (309)
Q Consensus 202 ~~~-~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~ 257 (309)
... ...+ .++|..+|++.+|+++++||.|--+.. ..+..++.++..|+++..
T Consensus 224 ~HG~T~eL--~~~LlPiL~~n~VdlY~nGHDHcLQhi--s~~e~~iqf~tSGagSka 276 (336)
T KOG2679 224 HHGPTKEL--EKQLLPILEANGVDLYINGHDHCLQHI--SSPESGIQFVTSGAGSKA 276 (336)
T ss_pred CCCCHHHH--HHHHHHHHHHCCCCEEEECCHHHHHHC--CCCCCCEEEEEECCCCCC
T ss_conf 15984999--998888998639757975654566521--577777058940775545
No 20
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.37 E-value=1.9e-12 Score=100.69 Aligned_cols=198 Identities=16% Similarity=0.121 Sum_probs=90.5
Q ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC--CEEEECCCCCCCC-----CHHHH-HH
Q ss_conf 9411142788541000222100012100000123308999999999962699--7999937444489-----98999-99
Q gi|255764495|r 14 HISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNV--DHVSITGDIVNFT-----CNREI-FT 85 (309)
Q Consensus 14 hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~p--D~vvitGDl~~~~-----~~~~~-~~ 85 (309)
.|||+|||+.. ++.-+.+++.++.+.+ |.+.+.|||++.. .++-. +.
T Consensus 2 FISDlHL~~~~-------------------------p~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V 56 (237)
T COG2908 2 FISDLHLGPKR-------------------------PALTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQV 56 (237)
T ss_pred EEECCCCCCCC-------------------------CHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHCCCCCCHHHHHH
T ss_conf 00200258997-------------------------07899999999835356757999500166662687603899999
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEE--CCCCCCC----
Q ss_conf 9999986189971899945884222203567664324543134444455562127997198799983--2888888----
Q gi|255764495|r 86 STHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGC--STAIATP---- 159 (309)
Q Consensus 86 ~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l--~s~~~~~---- 159 (309)
+..+........+||+++||||....... .......... ..+.+....+-.++.+ |+.+...
T Consensus 57 ~~~l~~~a~~G~~v~~i~GN~Dfll~~~f---~~~~g~~~l~---------~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~ 124 (237)
T COG2908 57 AQKLLRLARKGTRVYYIHGNHDFLLGKRF---AQEAGGMTLL---------PDPIVLDLYGKRILLAHGDTFCTDDRAYQ 124 (237)
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHHH---HHHCCCEEEC---------CCCEEEEECCCEEEEEECCCCCCHHHHHH
T ss_conf 99999998659847994476188887888---8652765875---------75404421694799974774361589999
Q ss_pred CCCCCCEECHHHHHHHHHHHHHCCCC-CCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEE
Q ss_conf 75547600899999999998524336-97089998376888764311012797899999987498199998767532478
Q gi|255764495|r 160 PFSANGYFGQEQAHATSKLLRKANKK-GFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHW 238 (309)
Q Consensus 160 ~~~~~g~~~~~q~~~l~~~L~~~~~~-~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~ 238 (309)
++...+...-.|.-.+..-++ .+.+ .....-..-...............+.+.+.+.+.+++|+.++|||+|++....
T Consensus 125 ~~r~~~~~~~~~~lflnl~l~-~R~ri~~k~r~~s~~~k~~~k~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~ 203 (237)
T COG2908 125 WFRYKVHWAWLQLLFLNLPLR-VRRRIAYKIRSLSSWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHN 203 (237)
T ss_pred HHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCC
T ss_conf 999970209999999871999-9999999999765776776654899998629999999997299979954856076636
Q ss_pred EECCCCCEEEEEECC
Q ss_conf 716998689999576
Q gi|255764495|r 239 IKNEKKLIPVVGIAS 253 (309)
Q Consensus 239 ~~~~~~~~~~~~~~s 253 (309)
+++ ..++++|+
T Consensus 204 i~~----~~yi~lGd 214 (237)
T COG2908 204 IPG----ITYINLGD 214 (237)
T ss_pred CCC----CEEEECCC
T ss_conf 888----62896486
No 21
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=99.31 E-value=2.3e-09 Score=80.47 Aligned_cols=247 Identities=18% Similarity=0.203 Sum_probs=126.1
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCHHHHH
Q ss_conf 55327889941114278854100022210001210000012330899999999996269979999-37444489989999
Q gi|255764495|r 6 TTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSI-TGDIVNFTCNREIF 84 (309)
Q Consensus 6 ~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvi-tGDl~~~~~~~~~~ 84 (309)
.|+=+||+-.||||--. ..|--+...............+++.++++.|+.|++ .||+.+...-.+|.
T Consensus 36 ~tV~LrIL~TTDlH~nv------------~~yDYy~Dk~~~~~GLar~ATLIk~aRaE~~NslLvDNGD~IQGtPlgdy~ 103 (780)
T PRK09418 36 STVNLRILETSDIHVNL------------MNYDYYQTKTDNKVGLVQTATLVNKAREEAKNSVLFDDGDALQGTPLGDYV 103 (780)
T ss_pred CEEEEEEEEECCCCCCC------------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHH
T ss_conf 71789998411344566------------685013699688767999999999999648982999687301587078999
Q ss_pred HHH-----------------HHHHHHCCCCCEEEEECCCCCCCCCH-HHHHHHH-HHHHHCCCCC--------CCCCCCC
Q ss_conf 999-----------------99986189971899945884222203-5676643-2454313444--------4455562
Q gi|255764495|r 85 TST-----------------HWLRSIGNPHDISIVPGNHDAYISGA-KEKSLHA-WKDYITSDTT--------CSTGKKL 137 (309)
Q Consensus 85 ~~~-----------------~~~~~l~~~~~v~~v~GNHD~~~~~~-~~~~~~~-~~~~~~~~~~--------~~~~~~~ 137 (309)
... ..+..| .+.+ .++||||+-.... ..+.... -.++...... .......
T Consensus 104 A~~~~~~~~~~~~g~~HPmi~AMN~L--gYDA-~tLGNHEFNYGLd~L~k~l~~a~fPvl~ANV~k~d~~~~~~~~~~~f 180 (780)
T PRK09418 104 ANKINDPKKPVDPSYTHPLYRLMNLM--KYDV-ISLGNHEFNYGLDYLNKVISKTEFPVINSNVYKDDKDNNEENDQNYF 180 (780)
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHC--CCCE-ECCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 76323444677777768899998753--9877-51446554368899999985599988975642056666655687354
Q ss_pred CEEEEEC------------CCEEEEEECCCCCCCCCCC--CCEE-CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
Q ss_conf 1279971------------9879998328888887554--7600-89999999999852433697089998376888764
Q gi|255764495|r 138 FPYLRIR------------NNIALIGCSTAIATPPFSA--NGYF-GQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTS 202 (309)
Q Consensus 138 ~~~~~~~------------~~~~~i~l~s~~~~~~~~~--~g~~-~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~ 202 (309)
.+|.... =.+.+||+.+.....|... .|.+ ..+-++..++...+.+.++..+||+.-|--+....
T Consensus 181 ~PY~Ilek~v~d~~G~~~~VKIGIIG~vpPqI~~WDk~~L~GkV~~~DiVEtAkk~Vp~mk~~GADvIValaHsGi~~~~ 260 (780)
T PRK09418 181 KPYHVFEKEVEDESGQKQKVKIGVMGFVPPQVMNWDKANLEGKVKAKDIVETAKKMVPKMKAEGADVIVALAHSGVDKSG 260 (780)
T ss_pred CCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 88799998875488971225899994478765222443445737966899999999999987499999994345667778
Q ss_pred CCCCCCCCHHHHHHHHHH-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEE
Q ss_conf 311012797899999987-4981999987675324787169986899995762357788887785489999538983899
Q gi|255764495|r 203 SLYNRMFGIQRFQKMIWH-EGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKNEYWTL 281 (309)
Q Consensus 203 ~~~~~~~~~~~l~~~l~~-~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~~~~~v 281 (309)
......+ ....|++ .++|+|++||.|......+.| +|++..+.-++ .-|-=-++++.+++.|+|
T Consensus 261 -~~~g~EN---a~~~La~VpGIDAIv~GHsH~~~~~tinG----vpvVmPG~wGs-------hLGvIDL~Le~~~gkW~V 325 (780)
T PRK09418 261 -YNVGMEN---ASYYLTEVPGVDAVLMGHSHTEVKDVFNG----VPVVMPGVFGS-------NLGIIDMQLKKVNGKWEV 325 (780)
T ss_pred -CCCCCHH---HHHHHHCCCCCCEEEECCCCCCCCCCCCC----EEEECCCHHHC-------EEEEEEEEEEEECCEEEE
T ss_conf -8765107---99998639987589833445002476588----47756665666-------244899999996998999
Q ss_pred E
Q ss_conf 9
Q gi|255764495|r 282 E 282 (309)
Q Consensus 282 ~ 282 (309)
.
T Consensus 326 ~ 326 (780)
T PRK09418 326 Q 326 (780)
T ss_pred E
T ss_conf 7
No 22
>PRK04036 DNA polymerase II small subunit; Validated
Probab=99.30 E-value=7.4e-11 Score=90.24 Aligned_cols=196 Identities=19% Similarity=0.242 Sum_probs=101.5
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH--------HCCCCEEEECCCCCCC----
Q ss_conf 7889941114278854100022210001210000012330899999999996--------2699799993744448----
Q gi|255764495|r 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDIL--------LHNVDHVSITGDIVNF---- 77 (309)
Q Consensus 10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~--------~~~pD~vvitGDl~~~---- 77 (309)
...+.|||+|+|. +.+..+.|+.+++.++ +.+...++++||+++.
T Consensus 237 v~aafiSDiHvGS-----------------------k~Fle~~w~kFi~Wln~~~~~~~~a~~vkYlviaGD~VDGVGiY 293 (497)
T PRK04036 237 VYAVFISDVHVGS-----------------------KEFLEDAFEKFLDWLNGEVGSEEIASRVKYLIIAGDLVDGIGIY 293 (497)
T ss_pred EEEEEEECCCCCC-----------------------HHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEECCCCCCEECC
T ss_conf 6899994222171-----------------------87879999999998658986344564053899945743640058
Q ss_pred -CC---------HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHH-HHHHHHCCCCCCCCCCCCCEEEEECCC
Q ss_conf -99---------8999999999986189971899945884222203567664-324543134444455562127997198
Q gi|255764495|r 78 -TC---------NREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLH-AWKDYITSDTTCSTGKKLFPYLRIRNN 146 (309)
Q Consensus 78 -~~---------~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (309)
|. -+.|+.+.++++++...+.++++|||||..........+. .+...+.. ........|......+
T Consensus 294 PgQe~eL~i~di~~QY~~~a~~l~~iP~~I~iii~PGNHDavR~AEPQP~l~~~~~~~~~~---~n~~~v~NP~~v~l~G 370 (497)
T PRK04036 294 PGQEKELDIVDIYEQYEEAAEYLSQIPEHIKIIISPGNHDAVRLAEPQPAFPEEIASLFPK---ENVTFVSNPAVVNLHG 370 (497)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHCCC---CCEEEECCCEEEEECC
T ss_conf 9843414307899999999999985855757998579866335468999988888842554---7869967974899888
Q ss_pred EEEEEEC-----CCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 7999832-----88888875547600899999999998524336970899983768887643110127978999999874
Q gi|255764495|r 147 IALIGCS-----TAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHE 221 (309)
Q Consensus 147 ~~~i~l~-----s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~ 221 (309)
+.++.-- .....-+... .-.+. ...++.|+. +.-..+--.+-| +.+.. .+.+ ++. -
T Consensus 371 ~~vL~YHG~S~dd~v~~ip~~s--y~~p~--~~m~~lLkr---RHLaP~~G~~~p-iape~--~D~l--------vId-~ 431 (497)
T PRK04036 371 VDVLIYHGRSIDDVIGLIPGAS--YDKPG--KAMEELLKR---RHLAPIYGGRTP-IAPEK--EDYL--------VID-E 431 (497)
T ss_pred EEEEEECCCCHHHHHHHCCCCC--CCCHH--HHHHHHHHH---CCCCCCCCCCCC-CCCCC--CCCE--------EEC-C
T ss_conf 7899886876889997575777--57989--999999986---155876589677-79998--7866--------324-8
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCC
Q ss_conf 98199998767532478716998689999576235
Q gi|255764495|r 222 GADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQ 256 (309)
Q Consensus 222 ~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~ 256 (309)
-.|+..+||+|.......+| +.. ++|++.
T Consensus 432 vPDif~tGHvH~~~~~~Y~g----v~~--insgtw 460 (497)
T PRK04036 432 VPDIFHTGHVHINGVGNYRG----VLL--VNSGTW 460 (497)
T ss_pred CCCEEECCCCCEECCCCCCC----EEE--EECCCC
T ss_conf 98617727501001000478----889--823766
No 23
>KOG2310 consensus
Probab=99.23 E-value=6.7e-09 Score=77.38 Aligned_cols=233 Identities=16% Similarity=0.191 Sum_probs=122.5
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH-
Q ss_conf 4325532788994111427885410002221000121000001233089999999999626997999937444489989-
Q gi|255764495|r 3 KRYTTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNR- 81 (309)
Q Consensus 3 ~~~~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~- 81 (309)
.-|+-+| ||+..||.|+|..++-. -+..+....++.+++.+.+++.|+|+..|||++...|.
T Consensus 8 ~D~enti-rILVaTD~HlGY~EkD~----------------vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr 70 (646)
T KOG2310 8 DDFENTI-RILVATDNHLGYGEKDA----------------VRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSR 70 (646)
T ss_pred CCCCCCE-EEEEEECCCCCCCCCCC----------------CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCH
T ss_conf 3321206-89985157545566775----------------346631777999999887637757985374123578518
Q ss_pred -HHHHHHHHHHHH----------------------------------CCCCCEEEEECCCCCCCCCHHHHHH-----HHH
Q ss_conf -999999999861----------------------------------8997189994588422220356766-----432
Q gi|255764495|r 82 -EIFTSTHWLRSI----------------------------------GNPHDISIVPGNHDAYISGAKEKSL-----HAW 121 (309)
Q Consensus 82 -~~~~~~~~~~~l----------------------------------~~~~~v~~v~GNHD~~~~~~~~~~~-----~~~ 121 (309)
..-.+.+.++.. ...+||+-|-||||.......--.+ ...
T Consensus 71 ~~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~~lsalDIL~~~GL 150 (646)
T KOG2310 71 KTLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDGRLSALDILSAAGL 150 (646)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCEECCCCCCCEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHCCH
T ss_conf 89999999999970489851468704653001544442001337876532346875168889765554456788775156
Q ss_pred HHHHCCCCCCCCCCCCCEEEEECCC--EEEEEECCCCCCCCCCCCCEECHHHHHHHHHHH--H----HCCCCCCEEEEEE
Q ss_conf 4543134444455562127997198--799983288888875547600899999999998--5----2433697089998
Q gi|255764495|r 122 KDYITSDTTCSTGKKLFPYLRIRNN--IALIGCSTAIATPPFSANGYFGQEQAHATSKLL--R----KANKKGFFRIIMM 193 (309)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L--~----~~~~~~~~~iv~~ 193 (309)
-.|+.. .........+|.....|. +.++||. .+.++.+-++-..- . ......++.+++.
T Consensus 151 VNyFGk-~~~id~I~vsPiLlqKG~tklALYGLg------------~irDeRL~R~Fk~~~V~f~rPe~~e~dWFNllvl 217 (646)
T KOG2310 151 VNYFGK-VSEIDKIDVSPILLQKGSTKLALYGLG------------SIRDERLYRMFKNGKVTFLRPEEYEDDWFNLLVL 217 (646)
T ss_pred HHHHCC-CCCCCEEEEEEEEECCCCEEEEEEECC------------CCCHHHHHHHHHHCCEEEECCCCCCCCCEEEEEE
T ss_conf 665154-567660798740020674267874046------------6640899999872844895686444452015777
Q ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCC-CCCCC-CEEEEE
Q ss_conf 3768887643110127978999999874981999987675324787169986899995762357788-88778-548999
Q gi|255764495|r 194 HHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHS-NKPQA-SYNLFY 271 (309)
Q Consensus 194 Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~-~y~li~ 271 (309)
|..-...... ... .+.|.+ .+ .|+|+.||-|--.....+++.....++.-||...+... +...+ -..+++
T Consensus 218 HQNr~~h~~t---n~l-pE~flp---~F-~DlviWGHEHEC~i~p~~n~~~~F~i~QPGSsVaTSL~~gEa~~Khv~lL~ 289 (646)
T KOG2310 218 HQNRSKHRPT---NFL-PEQFLP---DF-LDLVIWGHEHECKIDPQYNAIQGFYILQPGSSVATSLSPGEAKPKHVGLLR 289 (646)
T ss_pred EECCCCCCCC---CCC-CHHHHH---HH-HHHEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 5036678874---548-576766---55-664242353334347332643351661688722424586545675589999
Q ss_pred EE
Q ss_conf 95
Q gi|255764495|r 272 IE 273 (309)
Q Consensus 272 i~ 273 (309)
|.
T Consensus 290 Ik 291 (646)
T KOG2310 290 IK 291 (646)
T ss_pred EC
T ss_conf 52
No 24
>TIGR00583 mre11 DNA repair protein (mre11); InterPro: IPR003701 Mre11 and Rad50 are two proteins required for DNA repair and meiosis-specific double-strand break formation in Saccharomyces cerevisiae. Mre11 by itself has 3' to 5' exonuclease activity that is increased when Mre11 is in a complex with Rad50 . These eukaryotic proteins contain one metallo-phosphoesterase domain followed by an Mre11 DNA-binding domain. S. cerevisiae Mre11 is required for DNA repair and meiosis-specific double-strand break (DSB) formation and has both 3' to 5' exonuclease activity (which increases when in complex with Rad50) and endonuclease activity. The N-terminal phosphoesterase domain is required for DSB repair, and the carboxyl-terminal dsDNA-binding domain is essential during meiosis for chromatin modification and DSB formation . Schizosaccharomyces pombe rad32 is required for repair of double strand breaks and recombination . For additional information please see . ; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=99.21 E-value=6.9e-11 Score=90.46 Aligned_cols=236 Identities=17% Similarity=0.146 Sum_probs=119.8
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH--HHHHH
Q ss_conf 2788994111427885410002221000121000001233089999999999626997999937444489989--99999
Q gi|255764495|r 9 MFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNR--EIFTS 86 (309)
Q Consensus 9 m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~--~~~~~ 86 (309)
..||+--||.|.|..++-.- ...+....++.+++.+++++.|.|+.+|||++...|. ..-++
T Consensus 3 tIrILv~tD~HvGY~E~~p~----------------~~~Ds~~tF~Evl~iA~~~~VDMvllgGDLFH~NkPSrk~lYqv 66 (424)
T TIGR00583 3 TIRILVSTDNHVGYGENDPV----------------RGDDSWKTFEEVLQIAKEQDVDMVLLGGDLFHENKPSRKSLYQV 66 (424)
T ss_pred EEEEEECCCCCCCCCCCCCC----------------CCCCCCCCHHHHHHHHHHCCCCEEEECCCEEECCCCCHHHHHHH
T ss_conf 06898424786475668875----------------57764125689999975089678985681642458407899999
Q ss_pred HHHHHHH----------------------------------CCCCCEEEEECCCCCCCCCHHHHHHHHHH----HHHCCC
Q ss_conf 9999861----------------------------------89971899945884222203567664324----543134
Q gi|255764495|r 87 THWLRSI----------------------------------GNPHDISIVPGNHDAYISGAKEKSLHAWK----DYITSD 128 (309)
Q Consensus 87 ~~~~~~l----------------------------------~~~~~v~~v~GNHD~~~~~~~~~~~~~~~----~~~~~~ 128 (309)
.+.|+.. ....||+-|-||||..+.....-.+.... -.+.+.
T Consensus 67 l~~LR~~CLg~kPceLElLSDaS~~f~~~~f~~vNY~Dpn~Nv~iPvF~IhGNHDD~SGdg~l~aLDlL~~~GLvN~FGk 146 (424)
T TIGR00583 67 LRSLRLYCLGDKPCELELLSDASVVFEQSAFGNVNYEDPNINVAIPVFSIHGNHDDPSGDGRLCALDLLHATGLVNYFGK 146 (424)
T ss_pred HHHHHHHHCCCCCEEEEECCCHHHHCCCCCCCEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 99998762686813211035324414882023004558874140454301266458888855576688876055623564
Q ss_pred CCCCCCCCCCEEEEECCC--EEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCC---CCCCCC
Q ss_conf 444455562127997198--799983288888875547600899999999998524336970899983768---887643
Q gi|255764495|r 129 TTCSTGKKLFPYLRIRNN--IALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPP---VLDTSS 203 (309)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~--~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp---~~~~~~ 203 (309)
......-.-.|.....|. +.++||.+....+-+.++ .+..+..++= ...+..++.++++|.+= ...+..
T Consensus 147 v~e~d~i~V~PiLLqKG~TkLALYGl~~vRDeRL~r~F---k~n~v~F~rP---~~~~~dWFNLl~lHQNhPrr~~Ht~T 220 (424)
T TIGR00583 147 VPESDNIIVSPILLQKGETKLALYGLSNVRDERLFRTF---KDNKVKFLRP---NLRKEDWFNLLVLHQNHPRRAAHTST 220 (424)
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCEEEE---ECCCEEEEEC---CCCCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 54456048734432478724445410112110102012---1273588417---77768741000021588664557774
Q ss_pred CCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCC-----CCEEEEEECCCCCCC--CCCCCCCCEEEEEEE
Q ss_conf 1101279789999998749819999876753247871699-----868999957623577--888877854899995
Q gi|255764495|r 204 LYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEK-----KLIPVVGIASASQKV--HSNKPQASYNLFYIE 273 (309)
Q Consensus 204 ~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~-----~~~~~~~~~s~~~~~--~~~~~~~~y~li~i~ 273 (309)
.. +. +| ++|..+ .|+|+.||-|-=......++. ....++.=||+-.+. ..+.-++-..++.|.
T Consensus 221 G~--fL-PE---~~lpdF-~DlviWGHEHEC~~~~~~np~seavG~~F~vlQPGStvATSL~p~E~~pK~~~il~I~ 290 (424)
T TIGR00583 221 GS--FL-PE---SFLPDF-LDLVIWGHEHECLPDPVYNPSSEAVGKGFDVLQPGSTVATSLTPGEALPKHVFILNIK 290 (424)
T ss_pred CC--CC-CH---HHHHHH-HHHEEECCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCEEEEEEEC
T ss_conf 24--26-13---420345-6351305114523488626630013787668738862110578436367447887402
No 25
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=99.20 E-value=3.3e-09 Score=79.41 Aligned_cols=207 Identities=16% Similarity=0.119 Sum_probs=91.1
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH----HCCCC-EEEECCCCCCCCCHH
Q ss_conf 5327889941114278854100022210001210000012330899999999996----26997-999937444489989
Q gi|255764495|r 7 TIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDIL----LHNVD-HVSITGDIVNFTCNR 81 (309)
Q Consensus 7 ~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~----~~~pD-~vvitGDl~~~~~~~ 81 (309)
+.-++|+|++|+|=--.+.. ......+.+..+++.++ +.+|+ +++.+||+++.....
T Consensus 32 ~~~ltilhtnD~Hg~~~~~~------------------~~~~G~a~~at~i~~~R~e~~a~~~n~llldaGD~~qGt~~s 93 (551)
T PRK09558 32 TYKITVLHTNDHHGHFWRNE------------------YGEYGLAARKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPES 93 (551)
T ss_pred CEEEEEEEECCCCCCCCCCC------------------CCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 57999998455556776766------------------788579999999999999985259987999588555677460
Q ss_pred HH---HHHHHHHHHHCCCCCEEEEECCCCCCCCCHHH-HHHH-HHHHHHCCCCC-C-CCCCCCCE-EEEECCCE--EEEE
Q ss_conf 99---99999998618997189994588422220356-7664-32454313444-4-45556212-79971987--9998
Q gi|255764495|r 82 EI---FTSTHWLRSIGNPHDISIVPGNHDAYISGAKE-KSLH-AWKDYITSDTT-C-STGKKLFP-YLRIRNNI--ALIG 151 (309)
Q Consensus 82 ~~---~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~-~~~~-~~~~~~~~~~~-~-~~~~~~~~-~~~~~~~~--~~i~ 151 (309)
.+ +...+++..+. +. .+++||||.-.....- .... .-.++...... . .......+ .....+++ .+||
T Consensus 94 ~l~~g~p~i~~mN~lg--yD-a~tlGNHEFD~G~~~l~~~~~~a~fP~LsANi~~~~~g~~~~~py~I~e~~G~kVGiIG 170 (551)
T PRK09558 94 DLQDAEPDFRGMNLIG--YD-AMAVGNHEFDNPLSVLRKQEKWAKFPFLSANIYQKSTGERLFKPYKIFDVQGLKIAVIG 170 (551)
T ss_pred HHCCCCHHHHHHHCCC--CC-EEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEEEEECCEEEEEEE
T ss_conf 4228807999986189--88-89777544557878999998527997798665677889815577699997996999997
Q ss_pred ECCCCCC---CCCCCCCEECHHHHHHHHHHHHHCCC-CCCE-EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
Q ss_conf 3288888---87554760089999999999852433-6970-89998376888764311012797899999987498199
Q gi|255764495|r 152 CSTAIAT---PPFSANGYFGQEQAHATSKLLRKANK-KGFF-RIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLI 226 (309)
Q Consensus 152 l~s~~~~---~~~~~~g~~~~~q~~~l~~~L~~~~~-~~~~-~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lv 226 (309)
+-+.... .|....+....+-.+-+++..++.+. ++.. +|++.|-....... ......+-..+.+.+...++|++
T Consensus 171 l~t~~t~~~~~p~~~~~~~f~d~ve~~~~~v~~Lr~~~g~DiII~L~H~G~~~d~~-~~~~~~~d~~lA~~~~~~gIDvI 249 (551)
T PRK09558 171 LTTEDTAKIGNPEYITDLEFRDPAEEAKKVIPELKQTEKPDIIIALTHMGHYADGE-HGSNAPGDVTMARALPAGSLDMI 249 (551)
T ss_pred CCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC-CCCCCCHHHHHHHHCCCCCCEEE
T ss_conf 15656301258455589557289999999999998538999899995566446655-45567316999974775685099
Q ss_pred EECCCCCCE
Q ss_conf 998767532
Q gi|255764495|r 227 LHGHTHLNS 235 (309)
Q Consensus 227 l~GH~H~~~ 235 (309)
+.||+|...
T Consensus 250 igGHsH~~~ 258 (551)
T PRK09558 250 IGGHSQDPV 258 (551)
T ss_pred EECCCCCEE
T ss_conf 807877500
No 26
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=99.17 E-value=5.2e-09 Score=78.11 Aligned_cols=262 Identities=15% Similarity=0.123 Sum_probs=123.8
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCHHHHH
Q ss_conf 55327889941114278854100022210001210000012330899999999996269979999-37444489989999
Q gi|255764495|r 6 TTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSI-TGDIVNFTCNREIF 84 (309)
Q Consensus 6 ~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvi-tGDl~~~~~~~~~~ 84 (309)
.|+-+||+..||||--. ..|--+...............+++.++++.|+.|++ .||+.+.....+|.
T Consensus 39 ~tV~LrIl~TTDlH~~l------------~~yDYy~d~~~~~~GLar~AtLI~~~R~e~~NtlLvDNGD~iQGtPl~dy~ 106 (1260)
T PRK09419 39 KTVNISILATTDLHANM------------MDYDYYSDKETAGFGLAQTATLIEKARKENPNTLLVDNGDLIQGNPLGEYA 106 (1260)
T ss_pred CEEEEEEEEECCCCCCC------------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHH
T ss_conf 74899998530344566------------685002699688768999999999999648984999688512677067888
Q ss_pred HHHHH------------HHHHC-CCCCEEEEECCCCCCCCCHH-HHHHHH-HHHHHCCCCCC-CCCCCCCEEEEEC----
Q ss_conf 99999------------98618-99718999458842222035-676643-24543134444-4555621279971----
Q gi|255764495|r 85 TSTHW------------LRSIG-NPHDISIVPGNHDAYISGAK-EKSLHA-WKDYITSDTTC-STGKKLFPYLRIR---- 144 (309)
Q Consensus 85 ~~~~~------------~~~l~-~~~~v~~v~GNHD~~~~~~~-~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~---- 144 (309)
...+- +..+. ..+.. ..+||||+-....+ .+.... -.++....... .......||....
T Consensus 107 a~~~~~~~~~~~~~HPmi~AMN~LgYDa-~tLGNHEFNYGLd~L~~~i~~a~fPvl~ANv~~~~g~~~f~PY~I~er~~~ 185 (1260)
T PRK09419 107 VKYEKDNIIFGNKTHPIILVMNALGYDA-GTLGNHEFNYGLDFLDGTIKGANLPIVNANLKTLDGKRVYTPYTIKDKTLT 185 (1260)
T ss_pred HHHCCCCCCCCCCCCHHHHHHHHCCCCE-ECCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEEEEEE
T ss_conf 7515455567899788999976508876-324465421578999999855999889656564899875488799988762
Q ss_pred ------C--CEEEEEECCCCCCCCCCC--CCEE-CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf ------9--879998328888887554--7600-8999999999985243369708999837688876431101279789
Q gi|255764495|r 145 ------N--NIALIGCSTAIATPPFSA--NGYF-GQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQR 213 (309)
Q Consensus 145 ------~--~~~~i~l~s~~~~~~~~~--~g~~-~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~ 213 (309)
. .+.++|+-......|... .|.+ ..+-.+-.++...+.++.+..+||+.-|--..... ......|+
T Consensus 186 d~~g~~~~vKVGiiG~vpPqI~~WDk~~L~Gkv~~~Dive~A~~~Vp~mk~~GADvVIalaHsGi~~~~-~~~g~ENa-- 262 (1260)
T PRK09419 186 DENGRKHGVKVGYIGFVPPQIMTWDKKNLKGQYEVKDITESAKETIPEMKEGGADVYIALAHSGIEKEA-QSYGAENS-- 262 (1260)
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCCHHHCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-CCCCCCHH--
T ss_conf 588872554999993279986535587755857977999999999999987599989995265778887-77776408--
Q ss_pred HHHHHHH-CCCEEEEECCCCCCEEEEE-------ECCC---CCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEE
Q ss_conf 9999987-4981999987675324787-------1699---868999957623577888877854899995389838999
Q gi|255764495|r 214 FQKMIWH-EGADLILHGHTHLNSLHWI-------KNEK---KLIPVVGIASASQKVHSNKPQASYNLFYIEKKNEYWTLE 282 (309)
Q Consensus 214 l~~~l~~-~~v~lvl~GH~H~~~~~~~-------~~~~---~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~~~~~v~ 282 (309)
...+..+ .++|++++||.|.-.-... +... ..+|++..+.-++. -|-=-++++.+++.|+|.
T Consensus 263 ~~~LA~~v~GIDAIv~GHsH~~fP~~~~~~~~~~d~~~gtingvpvvmPg~wG~~-------Lg~IDL~L~~~~~~W~V~ 335 (1260)
T PRK09419 263 AFDLAEKNPGIDAIVSGHQHGLFPSAEYPGVDQFNVKKGTINGIPVVMPKSWGKY-------VGKIDLTLEKDGSKWKVL 335 (1260)
T ss_pred HHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECCEEEECCCHHHCE-------EEEEEEEEEECCCEEEEE
T ss_conf 9999862999767980775603577434566555344440787677667546473-------569999999749989995
Q ss_pred EEEEECCC
Q ss_conf 99951377
Q gi|255764495|r 283 GKRYTLSP 290 (309)
Q Consensus 283 ~~r~~~~~ 290 (309)
-.+-...+
T Consensus 336 ~~~~~~~~ 343 (1260)
T PRK09419 336 DKKAKLES 343 (1260)
T ss_pred CCEEEEEE
T ss_conf 47647876
No 27
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=99.12 E-value=9.7e-09 Score=76.33 Aligned_cols=228 Identities=18% Similarity=0.188 Sum_probs=111.3
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CEEEECCCCCCCCCHHHH-
Q ss_conf 553278899411142788541000222100012100000123308999999999962699-799993744448998999-
Q gi|255764495|r 6 TTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNV-DHVSITGDIVNFTCNREI- 83 (309)
Q Consensus 6 ~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~p-D~vvitGDl~~~~~~~~~- 83 (309)
...-++|+|++|+|=-..+-..... ... .........+++.++++.+ .++|-+||+.+......+
T Consensus 23 ~~~~l~ilhtnD~H~~l~~~~~~~~------------~~~-~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~ 89 (517)
T COG0737 23 ETVKLTILHTNDLHGHLEPYDYDDD------------GDT-DGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYL 89 (517)
T ss_pred CCEEEEEEEECCHHHCCCCCCCCCC------------CCC-CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHCC
T ss_conf 6415899982342314231233445------------545-477899999999998647984999278757884501136
Q ss_pred ---HHHHHHHHHHCCCCCEEEEECCCCCCCCCHH-HHHH-HHHHHHHCCCCCCC---CCCCCCEE-EEECCCE--EEEEE
Q ss_conf ---9999999861899718999458842222035-6766-43245431344444---55562127-9971987--99983
Q gi|255764495|r 84 ---FTSTHWLRSIGNPHDISIVPGNHDAYISGAK-EKSL-HAWKDYITSDTTCS---TGKKLFPY-LRIRNNI--ALIGC 152 (309)
Q Consensus 84 ---~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~-~~~~-~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~--~~i~l 152 (309)
....+++..+. +. ....|||+....... .+.. ....++........ ......+| ....+++ .+||+
T Consensus 90 ~~g~~~~~~mN~m~--yD-a~tiGNHEFd~g~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~ 166 (517)
T COG0737 90 TKGEPTVDLLNALG--YD-AMTLGNHEFDYGLEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGL 166 (517)
T ss_pred CCCCHHHHHHHCCC--CC-EEEECCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCEEEEEEEE
T ss_conf 67875899986469--87-8951353334578999998740578779867863587776777876999619879999985
Q ss_pred CCCCCCCCCCC---CCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEC
Q ss_conf 28888887554---760089999999999852433697089998376888764311012797899999987498199998
Q gi|255764495|r 153 STAIATPPFSA---NGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHG 229 (309)
Q Consensus 153 ~s~~~~~~~~~---~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~G 229 (309)
.+.....+... .+.......+++++.+.+.+.++...||+.-|-...............-.+. . .++|+++.|
T Consensus 167 ~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~~~~~~~~~---~-~~iD~i~~G 242 (517)
T COG0737 167 TTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASEVPGDVDVA---V-PGIDLIIGG 242 (517)
T ss_pred CCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCCCCCC---C-CCCCEEEEC
T ss_conf 145432344656557816667999999999998735798999912678663345542266520235---5-667558835
Q ss_pred CCCCCEEEEE-ECCCCCEEEEEECC
Q ss_conf 7675324787-16998689999576
Q gi|255764495|r 230 HTHLNSLHWI-KNEKKLIPVVGIAS 253 (309)
Q Consensus 230 H~H~~~~~~~-~~~~~~~~~~~~~s 253 (309)
|.|+...... .+..+.++++.+++
T Consensus 243 H~H~~~~~~~~~~~~~~t~ivqag~ 267 (517)
T COG0737 243 HSHTVFPGGDKPGTVNGTPIVQAGE 267 (517)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 7774446775457658889996687
No 28
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=99.05 E-value=1.4e-07 Score=68.74 Aligned_cols=256 Identities=14% Similarity=0.134 Sum_probs=123.6
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-EEEECCCCCCCCCHHHHH
Q ss_conf 5532788994111427885410002221000121000001233089999999999626997-999937444489989999
Q gi|255764495|r 6 TTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVD-HVSITGDIVNFTCNREIF 84 (309)
Q Consensus 6 ~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD-~vvitGDl~~~~~~~~~~ 84 (309)
+|+-+||+-.||||--. ..|..+.+.............+++.++++.++ +++-.||+.+...-.+|.
T Consensus 112 ~tV~LRILeTTDlH~nl------------~~YDYY~Dkp~~~~GLaRtAtLI~~aR~E~~NslLvDNGD~iQGsPLgDY~ 179 (810)
T PRK11907 112 QTVDVRILSTTDLHTNL------------VNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNTVLVDNGDTIQGTPLGTYK 179 (810)
T ss_pred CEEEEEEEEECCCCCCC------------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHH
T ss_conf 43679998411200045------------675103699777634789999999998636874998478401677205467
Q ss_pred HHHH------------HHHHHCCCCCEEEEECCCCCCCCCHHHHH-H-HHHHHHHCCCCC-C-CCCCCCCEEEEE-----
Q ss_conf 9999------------99861899718999458842222035676-6-432454313444-4-455562127997-----
Q gi|255764495|r 85 TSTH------------WLRSIGNPHDISIVPGNHDAYISGAKEKS-L-HAWKDYITSDTT-C-STGKKLFPYLRI----- 143 (309)
Q Consensus 85 ~~~~------------~~~~l~~~~~v~~v~GNHD~~~~~~~~~~-~-~~~~~~~~~~~~-~-~~~~~~~~~~~~----- 143 (309)
...+ .+..| .+.+ ...||||+-....+-.. . ..-.++...... . .......+|...
T Consensus 180 A~~~~~~~g~~HP~~~AMN~L--gYDA-~tLGNHEFNYGLdfL~~~l~~A~FPvV~ANV~d~~t~~p~f~PY~Iler~v~ 256 (810)
T PRK11907 180 AIVDPVAEGEQHPMYAALEAL--GYDA-GTLGNHEFNYGLDYLKKVIATANMPIVNANVLDPKTGDFVYKPYKIITKTFT 256 (810)
T ss_pred HHCCCCCCCCCCHHHHHHHHH--CCCE-ECCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 530677778758799998750--8752-0245554334789999998559998884412358889815477699998877
Q ss_pred -CC------CEEEEEECCCCCCCCC--CCCCEEC-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf -19------8799983288888875--5476008-999999999985243369708999837688876431101279789
Q gi|255764495|r 144 -RN------NIALIGCSTAIATPPF--SANGYFG-QEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQR 213 (309)
Q Consensus 144 -~~------~~~~i~l~s~~~~~~~--~~~g~~~-~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~ 213 (309)
.+ .+.++|+-......|. .-.|++. .+..+-.+....+.+.+|..+||++-|--+.... .....+|+.
T Consensus 257 D~~G~~~~lKIGvIGfvPPQIm~WDk~~LeGkV~~~DIVetA~~~VP~Mka~GADvIIALaHSGi~~~~-~~~~~ENa~- 334 (810)
T PRK11907 257 DTTGRKVTLNIGITGIVPPQILNWDKANLEGKVIVRDSVEAIRDIVPTMRAAGADIILVLSHSGIGDDR-YEKGEENVG- 334 (810)
T ss_pred CCCCCEEEEEEEEEECCCCCCEEECHHHCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-CCCCHHHHH-
T ss_conf 689987437899996259742153185763976955689999999999987489899992365777887-774202456-
Q ss_pred HHHHHHHCCCEEEEECCCCCCEEE--------EEE------CCCCCEEEEEECCCCCCCCCCCCCCCEEEE--EEECCCC
Q ss_conf 999998749819999876753247--------871------699868999957623577888877854899--9953898
Q gi|255764495|r 214 FQKMIWHEGADLILHGHTHLNSLH--------WIK------NEKKLIPVVGIASASQKVHSNKPQASYNLF--YIEKKNE 277 (309)
Q Consensus 214 l~~~l~~~~v~lvl~GH~H~~~~~--------~~~------~~~~~~~~~~~~s~~~~~~~~~~~~~y~li--~i~~~~~ 277 (309)
..+-+-.|+|.|++||.|.-+-. .+. |.-..+|+++.+.- ..--.+| .++.+++
T Consensus 335 -~~LA~V~GIDAIl~GHsH~vFPs~~~~~~~~~~~gvD~~kGtinGvPaVMpG~w---------GsHLGvIDL~L~~~~g 404 (810)
T PRK11907 335 -YQIASIKGVDAVVTGHSHAEFPSGNGTGFYEKYPGVDGINGKINGTPVTMAGKY---------GDHLGIIDLKLSYTDG 404 (810)
T ss_pred -HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC---------CCEEEEEEEEEEECCC
T ss_conf -776338986579716654126798665300146776422363887640567642---------2502148778897299
Q ss_pred EEEEEEEEEEC
Q ss_conf 38999999513
Q gi|255764495|r 278 YWTLEGKRYTL 288 (309)
Q Consensus 278 ~~~v~~~r~~~ 288 (309)
.|+|.-.+-..
T Consensus 405 ~W~V~~~~a~~ 415 (810)
T PRK11907 405 KWKVTESKAKI 415 (810)
T ss_pred EEEEECCEEEE
T ss_conf 78992465147
No 29
>pfam09423 PhoD PhoD-like phosphatase.
Probab=98.92 E-value=8.8e-07 Score=63.46 Aligned_cols=196 Identities=13% Similarity=0.059 Sum_probs=107.7
Q ss_pred HHHCCCCEEEECCCCCC-CC-----------------------CHHHHHHHH------HHHHHHCCCCCEEEEECCCCCC
Q ss_conf 96269979999374444-89-----------------------989999999------9998618997189994588422
Q gi|255764495|r 60 ILLHNVDHVSITGDIVN-FT-----------------------CNREIFTST------HWLRSIGNPHDISIVPGNHDAY 109 (309)
Q Consensus 60 i~~~~pD~vvitGDl~~-~~-----------------------~~~~~~~~~------~~~~~l~~~~~v~~v~GNHD~~ 109 (309)
++...+|+||+.||.+- .+ +..+|+.-. .-++.+....|++++--+||+.
T Consensus 128 a~~~~~D~vlhlGDyIYE~~~~~~~~~~~~~~~~~~~p~~e~~tL~dYR~rya~y~~D~~Lq~~ha~~P~i~~WDDHEv~ 207 (450)
T pfam09423 128 ARRDDPDFVLHLGDYIYEYGPIGGGGYGNLVREEKGRPAHEIVTLADYRGRYAQYKSDPDLQAAHAAVPWIVTWDDHEVA 207 (450)
T ss_pred HHCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCHHHHHHHHHCCEEEEECCCCCC
T ss_conf 61259988996287675406776655455554445788651414999999999870699899998629889872675201
Q ss_pred CCCH-----------------HHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC-EEEEEECCCCCCCCC----------
Q ss_conf 2203-----------------567664324543134444455562127997198-799983288888875----------
Q gi|255764495|r 110 ISGA-----------------KEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNN-IALIGCSTAIATPPF---------- 161 (309)
Q Consensus 110 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~s~~~~~~~---------- 161 (309)
.... .......|.+|+.-...........+.....|. ..+++||+-.+....
T Consensus 208 Nd~~~~ga~~~~~~e~~~~~rr~aA~qAy~E~mPiR~~~~~~~~~iYR~f~~G~La~l~~LDtR~yr~~~~~~~~~~~~~ 287 (450)
T pfam09423 208 NNWAGDGAENHQEDEGDFDARRAAAYQAYYEWMPIRPPPPGDDLRIYRSFRYGDLADLFMLDTRQYRRDQPLGNKADCPE 287 (450)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 67523444357877630899999999999975766578889884278873035830035653133366533466766310
Q ss_pred ---CCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC------------CCCCCCCCCCCHHHHHHHHHHCCCE--
Q ss_conf ---54760089999999999852433697089998376888------------7643110127978999999874981--
Q gi|255764495|r 162 ---SANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVL------------DTSSLYNRMFGIQRFQKMIWHEGAD-- 224 (309)
Q Consensus 162 ---~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~------------~~~~~~~~~~~~~~l~~~l~~~~v~-- 224 (309)
...-.++.+|++||.+.|++.+ .++.|+..-.|... ..+.|..-...++++.+.+++.++.
T Consensus 288 ~~dp~rtmLG~~Q~~WL~~~L~~S~--a~Wkvi~~qv~~~~~~~~~~~~~~~~n~D~WdGY~aeR~rll~~i~~~~i~N~ 365 (450)
T pfam09423 288 VDDPDRTLLGAEQEQWLKRGLAAST--ATWKVIAQQVPFGRLVPDAGPGGLPYNLDAWDGYPAERERLLRFIKDAGIRNV 365 (450)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHCCC--CCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 0386555489889999998885189--84399986001331236876444546788878719999999999997399986
Q ss_pred EEEECCCCCCEEEEEEC-----CCCC-E-EEEEECCCCCC
Q ss_conf 99998767532478716-----9986-8-99995762357
Q gi|255764495|r 225 LILHGHTHLNSLHWIKN-----EKKL-I-PVVGIASASQK 257 (309)
Q Consensus 225 lvl~GH~H~~~~~~~~~-----~~~~-~-~~~~~~s~~~~ 257 (309)
++|.|-+|......+.- +.+. + .-+.++|.++.
T Consensus 366 V~LtGD~H~~~a~~l~~d~~~~~~~~~v~~EF~~~svtS~ 405 (450)
T pfam09423 366 VVLTGDVHYAWANDLKPDRADFPDSGAVGVEFVTTSVSSG 405 (450)
T ss_pred EEEEEHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 9995056777885277653346679942899828974799
No 30
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.89 E-value=6e-07 Score=64.53 Aligned_cols=205 Identities=17% Similarity=0.159 Sum_probs=98.8
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-EEEECCCCCCCCCHH---
Q ss_conf 5532788994111427885410002221000121000001233089999999999626997-999937444489989---
Q gi|255764495|r 6 TTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVD-HVSITGDIVNFTCNR--- 81 (309)
Q Consensus 6 ~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD-~vvitGDl~~~~~~~--- 81 (309)
++.-++|+|+.|+|=.- .....+...++.+++++|. +++.+||.++...-.
T Consensus 662 ~~~~l~v~htND~H~~l-------------------------~~~ak~~~~IKe~RaenpNtLlLdAGD~fqGtl~snl~ 716 (1260)
T PRK09419 662 VTWNLTVMHTNDTHAHL-------------------------DGAARRVGKIKEVREENPNTILLDAGDVFSGDLYFTKW 716 (1260)
T ss_pred CEEEEEEEEECCCHHHH-------------------------HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEHHH
T ss_conf 45777888604542434-------------------------42788999999987439975999677567760401120
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHH-HHHHHH----------------HHHHHCCCCC-----CC-------
Q ss_conf 999999999861899718999458842222035-676643----------------2454313444-----44-------
Q gi|255764495|r 82 EIFTSTHWLRSIGNPHDISIVPGNHDAYISGAK-EKSLHA----------------WKDYITSDTT-----CS------- 132 (309)
Q Consensus 82 ~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~-~~~~~~----------------~~~~~~~~~~-----~~------- 132 (309)
.-+...+++..+.-. .+++|||++-..... .++... -.++...... ..
T Consensus 717 kGea~~e~MN~mGyD---AmtvGNHEFD~G~~~L~~f~~g~~~~~d~~~~~~~~~a~FPvLsANv~~~~t~~l~~~~k~~ 793 (1260)
T PRK09419 717 KGLADLKMMNMMGYD---AMTFGNHEFDKGPDVLPDFLKGGYSAVDPLNRHQFEKPEFPFVSSNVDVSKEGKLVSWAKKP 793 (1260)
T ss_pred CCHHHHHHHHHCCCC---EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHCCCC
T ss_conf 898999998733977---88115556667778999987346655543222222236898898886536887510000144
Q ss_pred --------CCCCCCEE-EEECCC--EEEEEECCCC---CCCCCCCCCEECHHHHHHHHHHHHHCCC-CCCEEEEEEECCC
Q ss_conf --------55562127-997198--7999832888---8887554760089999999999852433-6970899983768
Q gi|255764495|r 133 --------TGKKLFPY-LRIRNN--IALIGCSTAI---ATPPFSANGYFGQEQAHATSKLLRKANK-KGFFRIIMMHHPP 197 (309)
Q Consensus 133 --------~~~~~~~~-~~~~~~--~~~i~l~s~~---~~~~~~~~g~~~~~q~~~l~~~L~~~~~-~~~~~iv~~Hhpp 197 (309)
......|| +.+.++ +.|||+.+.. ...|.. +-...+..+.+++..++.+. .+...||++.|--
T Consensus 794 ~~~~a~~~~~~~i~PY~I~Ev~G~KIGIIGltT~eT~~~ssP~~--~v~F~D~vetaq~~V~eLk~~~GVd~II~LsHlG 871 (1260)
T PRK09419 794 ATFTAGKKKEAGIYPYILLDVNGEKVGVFGLTTEDTAYTSSPGK--NIEFKDAYESAEKTVKELQEKEKVNKIIALTHIG 871 (1260)
T ss_pred CCCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCCCCCCCC--CCEECCHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 43333333445669838999899999999852688755668999--9667379999999999998636999899996788
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHH-CCCEEEEECCCCCCEEEEE-ECCCCCEEEEEECC
Q ss_conf 88764311012797899999987-4981999987675324787-16998689999576
Q gi|255764495|r 198 VLDTSSLYNRMFGIQRFQKMIWH-EGADLILHGHTHLNSLHWI-KNEKKLIPVVGIAS 253 (309)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~~l~~-~~v~lvl~GH~H~~~~~~~-~~~~~~~~~~~~~s 253 (309)
.. .+ .++.++ .++|+|+.||.|...-... .+...+++++.+.+
T Consensus 872 ~~---------~D----~~lA~~V~GIDVIIgGHSHTll~~~~~v~~~ngt~IVQA~~ 916 (1260)
T PRK09419 872 SN---------RD----LELAEKVKGIDLIIGGHTHTLVDKLKVVGNVEPTIVAQAKK 916 (1260)
T ss_pred CC---------CC----HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCH
T ss_conf 63---------23----99997089998897288887778763147868779998681
No 31
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=98.88 E-value=1.1e-07 Score=69.32 Aligned_cols=186 Identities=20% Similarity=0.166 Sum_probs=96.2
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC-----CCCEEEECCCCCCCC------
Q ss_conf 788994111427885410002221000121000001233089999999999626-----997999937444489------
Q gi|255764495|r 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLH-----NVDHVSITGDIVNFT------ 78 (309)
Q Consensus 10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~-----~pD~vvitGDl~~~~------ 78 (309)
.+.+.|||+|.|.. .+....+...++.++.. +...++++||+++..
T Consensus 226 v~v~~isDih~GSk-----------------------~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq 282 (481)
T COG1311 226 VYVALISDIHRGSK-----------------------EFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQ 282 (481)
T ss_pred EEEEEEEEEECCCH-----------------------HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf 57999761110528-----------------------8888899999998638754321237999705521343444686
Q ss_pred --------CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC-CCCCCCEEEEECCCEEE
Q ss_conf --------989999999999861899718999458842222035676643245431344444-55562127997198799
Q gi|255764495|r 79 --------CNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCS-TGKKLFPYLRIRNNIAL 149 (309)
Q Consensus 79 --------~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 149 (309)
..+.|+.+.+++..+..-..|++.|||||............. +.+...... ......|+....++..+
T Consensus 283 ~~eL~i~di~~qy~~~A~~L~~vp~~I~v~i~PGnhDa~r~a~PQp~~~~---~~kslf~~~n~~~v~NP~~~~l~G~~v 359 (481)
T COG1311 283 EEELVIADIYEQYEELAEFLDQVPEHIKVFIMPGNHDAVRQALPQPHFPE---LIKSLFSLNNLLFVSNPALVSLHGVDV 359 (481)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCH---HHCCCCCCCCEEECCCCCEEEECCEEE
T ss_conf 12100055167899999988538777569981588875541358877511---202331026537617973798888899
Q ss_pred EEE-----CCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCC-CCHHHHHHHHHHCCC
Q ss_conf 983-----28888887554760089999999999852433697089998376888764311012-797899999987498
Q gi|255764495|r 150 IGC-----STAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRM-FGIQRFQKMIWHEGA 223 (309)
Q Consensus 150 i~l-----~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~-~~~~~l~~~l~~~~v 223 (309)
+.- |-....-|... .+.-...+++.|+. -|-.|..+...+.... .|. . ++.+ -.
T Consensus 360 L~~hG~sidDii~~vP~~~----~~~~~~ame~lLk~-----------rHlaPtygg~~p~aP~~kD~---l-VIee-vP 419 (481)
T COG1311 360 LIYHGRSIDDIIKLVPGAD----YDSPLKAMEELLKR-----------RHLAPTYGGTLPIAPETKDY---L-VIEE-VP 419 (481)
T ss_pred EEECCCCHHHHHHHCCCCC----CCCHHHHHHHHHHH-----------CCCCCCCCCCCCCCCCCCCC---E-EECC-CC
T ss_conf 9854899899986477877----32467899999986-----------14578889952026677685---5-6505-88
Q ss_pred EEEEECCCCCCEEEEEEC
Q ss_conf 199998767532478716
Q gi|255764495|r 224 DLILHGHTHLNSLHWIKN 241 (309)
Q Consensus 224 ~lvl~GH~H~~~~~~~~~ 241 (309)
|++.+||+|........|
T Consensus 420 Dv~~~Ghvh~~g~~~y~g 437 (481)
T COG1311 420 DVFHTGHVHKFGTGVYEG 437 (481)
T ss_pred CEEEECCCCCCCEEEEEC
T ss_conf 679976602212038862
No 32
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=98.88 E-value=1.5e-07 Score=68.42 Aligned_cols=146 Identities=17% Similarity=0.168 Sum_probs=81.3
Q ss_pred CEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CEEEECCCCCCCCCHHHHHHH
Q ss_conf 3278899411142788541000222100012100000123308999999999962699-799993744448998999999
Q gi|255764495|r 8 IMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNV-DHVSITGDIVNFTCNREIFTS 86 (309)
Q Consensus 8 ~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~p-D~vvitGDl~~~~~~~~~~~~ 86 (309)
.|..+-.+||+|||..--. .+ +.. .+-.++...++..+. +..+| |.|.+.||++.....+ ..+
T Consensus 2 sm~mmyfisDtHfgh~nvi-~~---------~pf-sn~~ehd~vil~N~n---ntv~p~D~lwhLGDl~~~~n~~--~~a 65 (186)
T COG4186 2 SMTMMYFISDTHFGHKNVI-SM---------RPF-SNPDEHDEVILSNWN---NTVGPDDVLWHLGDLSSGANRE--RAA 65 (186)
T ss_pred CEEEEEEECCCCCCCCCEE-EC---------CCC-CCHHHHHHHHHHHHH---HCCCCCCEEEEECCCCCCCCHH--HHH
T ss_conf 5058999504555874415-50---------887-887777599998687---5278443688811101145526--589
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCE
Q ss_conf 99998618997189994588422220356766432454313444445556212799719879998328888887554760
Q gi|255764495|r 87 THWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGY 166 (309)
Q Consensus 87 ~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~ 166 (309)
..+++.|... +..|+||||..-...... .
T Consensus 66 ~~IlerLnGr--khlv~GNhDk~~~~~~~~-------------------------------------------------~ 94 (186)
T COG4186 66 GLILERLNGR--KHLVPGNHDKCHPMYRHA-------------------------------------------------Y 94 (186)
T ss_pred HHHHHHCCCC--EEEEECCCCCCCCCCCCH-------------------------------------------------H
T ss_conf 9999976993--899607888876200000-------------------------------------------------2
Q ss_pred ECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 08999999999985243369708999837688876431101279789999998749819999876753
Q gi|255764495|r 167 FGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLN 234 (309)
Q Consensus 167 ~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~ 234 (309)
.+..+.+ +...-++. .+++.|+|--...... .+.+..-.+-.+.++++||.|.+
T Consensus 95 --~~svq~f----~~ie~dg~-~~~LsHyP~~~~~~~~-------~~~r~~y~~~~~~llIHGH~H~~ 148 (186)
T COG4186 95 --FDSVQAF----QRIEWDGE-DVYLSHYPRPGQDHPG-------MESRFDYLRLRVPLLIHGHLHSQ 148 (186)
T ss_pred --HHHHHHH----HHEEECCE-EEEEEECCCCCCCCCC-------HHHHHHHHHCCCCEEEECCCCCC
T ss_conf --6788887----73057886-8999827999888743-------03567787515876882232443
No 33
>KOG3662 consensus
Probab=98.66 E-value=1.9e-06 Score=61.24 Aligned_cols=95 Identities=13% Similarity=0.035 Sum_probs=57.1
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH-HCCCCEEEECCCCCCCC---CHHH
Q ss_conf 5327889941114278854100022210001210000012330899999999996-26997999937444489---9899
Q gi|255764495|r 7 TIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDIL-LHNVDHVSITGDIVNFT---CNRE 82 (309)
Q Consensus 7 ~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~-~~~pD~vvitGDl~~~~---~~~~ 82 (309)
+-.+||+-++|+|+=-.. ..+....++..-. ..-.+.+....+. -.+||.+++.|||++.| .++|
T Consensus 46 ~n~~ki~~vaDPQilg~~-----~~~~~~~~Ldk~~------~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eE 114 (410)
T KOG3662 46 ENSTKILLVADPQILGNW-----PKKFLVSWLDKYG------NDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEE 114 (410)
T ss_pred CCCEEEEEECCCHHCCCC-----CCCCCCCHHHHHH------HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHH
T ss_conf 885699995084322777-----8766552687642------48999999998874059977998500004675588599
Q ss_pred HHHHHHHHHHHCC---CCCEEEEECCCCCCCCC
Q ss_conf 9999999986189---97189994588422220
Q gi|255764495|r 83 IFTSTHWLRSIGN---PHDISIVPGNHDAYISG 112 (309)
Q Consensus 83 ~~~~~~~~~~l~~---~~~v~~v~GNHD~~~~~ 112 (309)
|..-.+.+..+.. ..++..+|||||.....
T Consensus 115 f~~~~~RfkkIf~~k~~~~~~~i~GNhDIGf~~ 147 (410)
T KOG3662 115 FKKRYERFKKIFGRKGNIKVIYIAGNHDIGFGN 147 (410)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
T ss_conf 999999999860887887248957966545664
No 34
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=98.52 E-value=1.5e-05 Score=55.26 Aligned_cols=208 Identities=15% Similarity=0.150 Sum_probs=90.3
Q ss_pred EEEECCCCCCCCCHHHHHHHH-----------HHHHHHCCCCCEEEEECCCCCCCCCHH-HHHHHH-HHHHHCCCCCC--
Q ss_conf 999937444489989999999-----------999861899718999458842222035-676643-24543134444--
Q gi|255764495|r 67 HVSITGDIVNFTCNREIFTST-----------HWLRSIGNPHDISIVPGNHDAYISGAK-EKSLHA-WKDYITSDTTC-- 131 (309)
Q Consensus 67 ~vvitGDl~~~~~~~~~~~~~-----------~~~~~l~~~~~v~~v~GNHD~~~~~~~-~~~~~~-~~~~~~~~~~~-- 131 (309)
++|-.||+.+...-..|.... ..+..| .+. ..++||||+-..... .+.... -.++.......
T Consensus 1 lLvDnGD~iQGsPl~~y~a~~~~~~~~~hPm~~aMN~l--gYD-a~tLGNHEFNyGld~L~~~i~~a~fPvl~ANv~~~~ 77 (578)
T PRK09420 1 VLVDNGDLIQGSPMGDYMAAKGLKAGDVHPVYKAMNTL--DYD-VGNLGNHEFNYGLDFLKKALAGAKFPYVNANVIDAK 77 (578)
T ss_pred CEECCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHC--CCC-EECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 96806753478737888864357678878899998720--988-862145555568999999996489989976422178
Q ss_pred CCCCCCCEEE------EECCC------EEEEEECCCCCCCCCCC--CCEE-CHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 4555621279------97198------79998328888887554--7600-89999999999852433697089998376
Q gi|255764495|r 132 STGKKLFPYL------RIRNN------IALIGCSTAIATPPFSA--NGYF-GQEQAHATSKLLRKANKKGFFRIIMMHHP 196 (309)
Q Consensus 132 ~~~~~~~~~~------~~~~~------~~~i~l~s~~~~~~~~~--~g~~-~~~q~~~l~~~L~~~~~~~~~~iv~~Hhp 196 (309)
.......+|. ....+ +.++|+-+.....|... .|.+ ..+..+..++...+.++++..+|+++-|-
T Consensus 78 ~g~~~f~PY~I~er~v~d~~G~~~~vKVGiiG~~tP~I~~Wd~~~L~G~v~~~D~ve~Akk~Vp~lk~~GaDvVIal~Hs 157 (578)
T PRK09420 78 TGEPLFTPYLIKEKEVKDKDGKEHTLKIGYIGFVPPQIMVWDKANLEGKVTVNDIVETARKYVPEMKEKGADIVVAIPHS 157 (578)
T ss_pred CCCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCHHHCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 89834476599987886179967535999996478665655643242717973789999999999986499999997166
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEE----EEC------CCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 888764311012797899999987498199998767532478----716------9986899995762357788887785
Q gi|255764495|r 197 PVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHW----IKN------EKKLIPVVGIASASQKVHSNKPQAS 266 (309)
Q Consensus 197 p~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~----~~~------~~~~~~~~~~~s~~~~~~~~~~~~~ 266 (309)
-+.... .....+|+ ...+-+-.++|++++||.|+..-.. +.+ .-..+|++..+.-+ ..-|
T Consensus 158 G~~~~~-~~~~~EN~--~~~La~v~GIDaIi~GHsH~~fp~~~~~~~~~~d~~kgtingvpvv~Pg~~G-------~~Lg 227 (578)
T PRK09420 158 GISADP-YKEMAENS--VYYLSEVPGIDAIMFGHSHAVFPGKDFADIPGADIAKGTLNGVPAVMPGRWG-------DHLG 227 (578)
T ss_pred CCCCCC-CCCCCCHH--HHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHH-------CEEE
T ss_conf 657788-88874268--8998658999889808867546775434666653233522674686677443-------8579
Q ss_pred EEEEEEECCCCEEEEEEEEEE
Q ss_conf 489999538983899999951
Q gi|255764495|r 267 YNLFYIEKKNEYWTLEGKRYT 287 (309)
Q Consensus 267 y~li~i~~~~~~~~v~~~r~~ 287 (309)
.--++++.+++.|+|.-.+-.
T Consensus 228 ~IdL~L~~~~g~w~V~~~~~~ 248 (578)
T PRK09420 228 VVDLVLENDSGKWQVVDAKAE 248 (578)
T ss_pred EEEEEEEECCCEEEEEECEEE
T ss_conf 999999963986999823415
No 35
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=98.50 E-value=6.4e-07 Score=64.35 Aligned_cols=90 Identities=21% Similarity=0.244 Sum_probs=59.5
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC---HHHHHHH
Q ss_conf 7889941114278854100022210001210000012330899999999996269979999374444899---8999999
Q gi|255764495|r 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTC---NREIFTS 86 (309)
Q Consensus 10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~---~~~~~~~ 86 (309)
-+.+.+||+|+|.+.....- +-... ......+.+.+.+.+...+|+.||+.||+-+... +.|+...
T Consensus 20 ~~~lVvADlHlG~e~~~~r~-Gi~lP----------~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~ 88 (235)
T COG1407 20 GRTLVVADLHLGYEESLARR-GINLP----------RYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEV 88 (235)
T ss_pred CCEEEEEECCCCHHHHHHHC-CCCCC----------CHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHH
T ss_conf 76799971233316988735-76267----------01589999999999986098779990753443675442328999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 9999861899718999458842222
Q gi|255764495|r 87 THWLRSIGNPHDISIVPGNHDAYIS 111 (309)
Q Consensus 87 ~~~~~~l~~~~~v~~v~GNHD~~~~ 111 (309)
..+++.+..+ .+.+|.||||.+..
T Consensus 89 ~~f~~~~~~~-evi~i~GNHD~~i~ 112 (235)
T COG1407 89 REFLELLDER-EVIIIRGNHDNGIE 112 (235)
T ss_pred HHHHHHHCCC-CEEEEECCCCCCCC
T ss_conf 9999974138-68999566777640
No 36
>PHA02239 putative protein phosphatase
Probab=98.50 E-value=5.3e-07 Score=64.89 Aligned_cols=71 Identities=17% Similarity=0.284 Sum_probs=49.0
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CC-CEEEECCCCCCCCCHHHHHHHH
Q ss_conf 788994111427885410002221000121000001233089999999999626-99-7999937444489989999999
Q gi|255764495|r 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLH-NV-DHVSITGDIVNFTCNREIFTST 87 (309)
Q Consensus 10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~-~p-D~vvitGDl~~~~~~~~~~~~~ 87 (309)
-||-.|+|||=+ .+.|.++++.|... +| |.+|+.||.+++|.... ...
T Consensus 1 m~IYaigDIHG~----------------------------~d~l~~ll~~i~~~~~~~~~lv~lGDyiDRGp~S~--~vi 50 (235)
T PHA02239 1 MAIYVVPDIHGE----------------------------YQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSK--DVV 50 (235)
T ss_pred CCEEEEEECCCC----------------------------HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHH--HHH
T ss_conf 965898624789----------------------------99999999998743797766999533106895629--999
Q ss_pred HHHHHH-CCCCCEEEEECCCCCCC
Q ss_conf 999861-89971899945884222
Q gi|255764495|r 88 HWLRSI-GNPHDISIVPGNHDAYI 110 (309)
Q Consensus 88 ~~~~~l-~~~~~v~~v~GNHD~~~ 110 (309)
+++-.+ .....+.++.||||.+.
T Consensus 51 ~~l~~l~~~~~~~~~L~GNHE~ml 74 (235)
T PHA02239 51 NYIFDLMSNDDNVVTLLGNHDDEF 74 (235)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 999987536997499107289999
No 37
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase; InterPro: IPR006294 These sequences represent 2',3'-cyclic-nucleotide 2'-phosphodiesterase; it is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found in the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a scavenging function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 23-cAMP as a sole source of carbon and energy . ; GO: 0008663 2'3'-cyclic-nucleotide 2'-phosphodiesterase activity, 0009117 nucleotide metabolic process.
Probab=98.46 E-value=2e-05 Score=54.51 Aligned_cols=263 Identities=15% Similarity=0.109 Sum_probs=132.6
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CEEEECCCCCCCCCHHHHHH-HH
Q ss_conf 78899411142788541000222100012100000123308999999999962699-79999374444899899999-99
Q gi|255764495|r 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNV-DHVSITGDIVNFTCNREIFT-ST 87 (309)
Q Consensus 10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~p-D~vvitGDl~~~~~~~~~~~-~~ 87 (309)
+||+-.+|+|=- ..++--+++..........-..|++.++++.- .+++-.|||++..+-.+|.. ++
T Consensus 3 LRI~eTTD~H~n------------~~dyDYYkD~~t~~fGl~~~A~L~~~AR~E~~NsvL~DNGDLIQG~Pl~DY~ara~ 70 (634)
T TIGR01390 3 LRIVETTDLHTN------------LLDYDYYKDKATDKFGLTRAATLIKQARAEVKNSVLVDNGDLIQGSPLADYMARAK 70 (634)
T ss_pred CEEEEHHHHHHH------------HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCHHHHHHHCC
T ss_conf 136311124656------------54254224575421125788899999753210427763675214884465676415
Q ss_pred HH-----------HHHHCCCCCEEEEECCCCCCCCCHHH--HHHHHHHHHHC------CCCCCCCCCCCCEEEEECC---
Q ss_conf 99-----------98618997189994588422220356--76643245431------3444445556212799719---
Q gi|255764495|r 88 HW-----------LRSIGNPHDISIVPGNHDAYISGAKE--KSLHAWKDYIT------SDTTCSTGKKLFPYLRIRN--- 145 (309)
Q Consensus 88 ~~-----------~~~l~~~~~v~~v~GNHD~~~~~~~~--~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--- 145 (309)
-+ ++.| .+.+ .-.|||+.-....+- .....-.++.. ............||+....
T Consensus 71 g~k~G~~~P~~~al~~l--~Y~v-g~lGNHEFNYGL~fL~~~~~~A~~P~v~aN~~~d~~~~~pg~~~FTPY~I~~~~v~ 147 (634)
T TIGR01390 71 GLKAGEVHPVYKALNLL--KYDV-GNLGNHEFNYGLEFLKEAIAAAKFPIVNANTVVDAGTGQPGANLFTPYLIKEKSVV 147 (634)
T ss_pred CCCCCCCCHHHHHHHHC--CCCE-EECCCCHHHHHHHHHHHHHHHCCCCEEECCCEEECCCCCCCCCCCCCEEEECCEEE
T ss_conf 43468745699988641--8632-30167313310689999997278977632524644678876543376456312475
Q ss_pred ---------CEEEEEECCCCCCCCC--CCCCEECHH-HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf ---------8799983288888875--547600899-9999999985243369708999837688876431101279789
Q gi|255764495|r 146 ---------NIALIGCSTAIATPPF--SANGYFGQE-QAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQR 213 (309)
Q Consensus 146 ---------~~~~i~l~s~~~~~~~--~~~g~~~~~-q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~ 213 (309)
.+..||+-+.....|. .-.|.+... -.+-.++..-+-+.+|..+||++-|--...... ...-+|.
T Consensus 148 D~~G~~~~l~vG~IG~vpPQI~~WDK~NL~GKv~~~DI~~Ta~K~vPEMk~~GAD~~Va~aHsG~s~d~Y-~~g~ENs-- 224 (634)
T TIGR01390 148 DTDGKKHTLKVGYIGLVPPQIMVWDKANLDGKVTTADIVETARKYVPEMKAKGADIVVALAHSGISADPY-QEGAENS-- 224 (634)
T ss_pred ECCCCEEEEEEEEEEEECCCEEEECCCCCCCCEEEHHHHHHHHHCCHHHHHCCCCEEEEECCCCCCCCCC-CCCCCCE--
T ss_conf 0688646888878973287013001112675268632688887315477736895999800688886644-3555300--
Q ss_pred HHHHHHHCCCEEEEECCCCCCEEEEEE--CCCCCEEEEEECCCCCCCCCCCCCCCEEEEEE--ECC--CCEEEEEEEEEE
Q ss_conf 999998749819999876753247871--69986899995762357788887785489999--538--983899999951
Q gi|255764495|r 214 FQKMIWHEGADLILHGHTHLNSLHWIK--NEKKLIPVVGIASASQKVHSNKPQASYNLFYI--EKK--NEYWTLEGKRYT 287 (309)
Q Consensus 214 l~~~l~~~~v~lvl~GH~H~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i--~~~--~~~~~v~~~r~~ 287 (309)
+..+-+=.+++.|++||.|.-+-...- -++-.+.--... +......+.+.....++++ +.+ .+.|.|+--+-.
T Consensus 225 ~~~L~~vpgidav~fGHsH~~FPgk~f~~~pgADI~~GT~~-G~p~vM~G~Wg~~~gVvDL~L~~~r~~g~W~v~~~k~~ 303 (634)
T TIGR01390 225 VYYLTKVPGIDAVLFGHSHAVFPGKDFAKIPGADITKGTIN-GVPAVMAGYWGNHLGVVDLQLEEDRKSGKWTVTSAKAE 303 (634)
T ss_pred EEHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEC-CCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCC
T ss_conf 01000378310898566133478800115887744355124-51011277545740378312011011475378617421
Q ss_pred CCCC
Q ss_conf 3776
Q gi|255764495|r 288 LSPD 291 (309)
Q Consensus 288 ~~~d 291 (309)
..|.
T Consensus 304 ~RPI 307 (634)
T TIGR01390 304 LRPI 307 (634)
T ss_pred CCCC
T ss_conf 2640
No 38
>KOG3947 consensus
Probab=98.30 E-value=2.1e-05 Score=54.35 Aligned_cols=167 Identities=16% Similarity=0.192 Sum_probs=86.1
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHH------HHHHHCCCCCCCCC---CC
Q ss_conf 7999937444489989999999999861899718999458842222035676643------24543134444455---56
Q gi|255764495|r 66 DHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHA------WKDYITSDTTCSTG---KK 136 (309)
Q Consensus 66 D~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~~ 136 (309)
|.++.+||.|+.|.++|.....+++..|...++| +|.|||+......+...+.. ..+-.......... ..
T Consensus 84 DvlihagdfT~~g~~~ev~~fn~~~gslph~yKI-VIaGNHELtFd~ef~~~~~k~~~~~~~~p~~s~l~P~a~egv~~l 162 (305)
T KOG3947 84 DVLIHAGDFTNLGLPEEVIKFNEWLGSLPHEYKI-VIAGNHELTFDHEFMADLIKDEQDAYYFPGVSKLKPEAYEGVQSL 162 (305)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEE-EEEECCCEEECCCCCCHHHCCCCCEECCCCCCCCCCCCCCCCCCH
T ss_conf 6577536876566779997555775057502358-985044001135455022124310000765344686554455320
Q ss_pred CCEEEE------ECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHC-CCCCCEEEEEEECCCCCCCCCCC---C
Q ss_conf 212799------7198799983288888875547600899999999998524-33697089998376888764311---0
Q gi|255764495|r 137 LFPYLR------IRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKA-NKKGFFRIIMMHHPPVLDTSSLY---N 206 (309)
Q Consensus 137 ~~~~~~------~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~-~~~~~~~iv~~Hhpp~~~~~~~~---~ 206 (309)
.....+ ...+++|++.+ +.. .....+.. +..-...|... .-.+..-+++.|-||........ .
T Consensus 163 LTN~iYLqD~~vtv~G~~Iygsp--w~p-~~~g~~f~----l~rg~~~ld~W~~ip~~iDvL~tHtPPlG~gd~~~~~~g 235 (305)
T KOG3947 163 LTNCIYLQDSEVTVRGVRIYGSP--WTP-LLPGWAFN----LPRGQSLLDKWNQIPGGIDVLITHTPPLGHGDLVPVFSG 235 (305)
T ss_pred HCEEEEEECCCEEEEEEEEECCC--CCC-CCCCHHHH----HHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHCCCCCC
T ss_conf 00148983275789888995688--873-34750444----466676667774186523210037898775001010158
Q ss_pred CCCCHHHHHHHHHH-CCCEEEEECCCCCCEEEEEE
Q ss_conf 12797899999987-49819999876753247871
Q gi|255764495|r 207 RMFGIQRFQKMIWH-EGADLILHGHTHLNSLHWIK 240 (309)
Q Consensus 207 ~~~~~~~l~~~l~~-~~v~lvl~GH~H~~~~~~~~ 240 (309)
...+.-+|...+++ -+..+...||+|..+-..-+
T Consensus 236 qr~GC~ell~tVe~rvqpk~hVfGhvhe~~Gvta~ 270 (305)
T KOG3947 236 QRNGCVELLNTVERRVQPKYHVFGHVHEGHGVTAD 270 (305)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEEEEECCCEEEEC
T ss_conf 31677788776764155334775455047304405
No 39
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=98.24 E-value=2.9e-05 Score=53.43 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=46.6
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 88994111427885410002221000121000001233089999999999626-99799993744448998999999999
Q gi|255764495|r 11 VLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLH-NVDHVSITGDIVNFTCNREIFTSTHW 89 (309)
Q Consensus 11 ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~-~pD~vvitGDl~~~~~~~~~~~~~~~ 89 (309)
||..++|||=| .+.|+++++.+.-. ..|.+|..||++|+|+... ...++
T Consensus 16 ~iyvVGDIHGc----------------------------~~~L~~lL~~i~~~p~~D~Lv~lGDlIDRGpdS~--~Vl~l 65 (218)
T PRK09968 16 HIWVVGDIHGC----------------------------YQLLQSRLHQLSFCPETDLLISVGDNIDRGPESL--NVLRL 65 (218)
T ss_pred EEEEEECCCCC----------------------------HHHHHHHHHHCCCCCCCCEEEEECCEECCCCCCH--HHHHH
T ss_conf 07999647679----------------------------8999999996478845688998066425788829--99999
Q ss_pred HHHHCCCCCEEEEECCCCCCC
Q ss_conf 986189971899945884222
Q gi|255764495|r 90 LRSIGNPHDISIVPGNHDAYI 110 (309)
Q Consensus 90 ~~~l~~~~~v~~v~GNHD~~~ 110 (309)
+. .+ .+++|.||||.+.
T Consensus 66 l~---~~-~~~~v~GNHE~ml 82 (218)
T PRK09968 66 LN---QP-WFISVKGNHEAMA 82 (218)
T ss_pred HH---CC-CCEEECCHHHHHH
T ss_conf 84---47-9879727479999
No 40
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=98.19 E-value=5.1e-06 Score=58.42 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=49.2
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC---------CCCEEEECCCCCCCCCH
Q ss_conf 788994111427885410002221000121000001233089999999999626---------99799993744448998
Q gi|255764495|r 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLH---------NVDHVSITGDIVNFTCN 80 (309)
Q Consensus 10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~---------~pD~vvitGDl~~~~~~ 80 (309)
.|.+.|+|+|=| .+.|+++++.+.-. .-|.+++.||++|+|+.
T Consensus 1 m~~~VIGDIHGC----------------------------~~~L~~LL~ki~f~~~~d~~~~p~~d~LvflGDlVdRGP~ 52 (245)
T PRK13625 1 MKYDIIGDIHGC----------------------------YQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPH 52 (245)
T ss_pred CCEEEEEECCCC----------------------------HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 937899558789----------------------------8999999997086623576568887679994653278957
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 99999999998618997189994588422
Q gi|255764495|r 81 REIFTSTHWLRSIGNPHDISIVPGNHDAY 109 (309)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~v~~v~GNHD~~ 109 (309)
. ....+++.+|.....+.+|.||||..
T Consensus 53 S--~~vl~~v~~l~~~~~~~~v~GNHE~~ 79 (245)
T PRK13625 53 S--LRMIEIVWELVHKKAAYYVPGNHCNK 79 (245)
T ss_pred H--HHHHHHHHHHHHCCCEEEEECHHHHH
T ss_conf 0--99999999998659879995807999
No 41
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=98.09 E-value=9.5e-06 Score=56.64 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=49.2
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCCCCCHH
Q ss_conf 4325532788994111427885410002221000121000001233089999999999626-997999937444489989
Q gi|255764495|r 3 KRYTTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLH-NVDHVSITGDIVNFTCNR 81 (309)
Q Consensus 3 ~~~~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~-~pD~vvitGDl~~~~~~~ 81 (309)
.+|. ||..|+|||=| .+.|+++++.+... ..|.+|+.||++|+|+..
T Consensus 14 ~~~r----~iyvIGDIHGc----------------------------~d~L~~lL~~i~~~~~~D~LI~lGDlIDRGPdS 61 (218)
T PRK11439 14 KQWR----HIWLVGDIHGC----------------------------FEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQS 61 (218)
T ss_pred CCCC----EEEEEECCCCC----------------------------HHHHHHHHHHCCCCCCCCEEEECCCEECCCCCH
T ss_conf 7874----69999646589----------------------------999999999638995467899858601789787
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 99999999986189971899945884222
Q gi|255764495|r 82 EIFTSTHWLRSIGNPHDISIVPGNHDAYI 110 (309)
Q Consensus 82 ~~~~~~~~~~~l~~~~~v~~v~GNHD~~~ 110 (309)
. ...+++.+ ..+++|.||||.+.
T Consensus 62 ~--~vl~ll~~----~~~~~v~GNHE~ml 84 (218)
T PRK11439 62 L--RCLQLLRE----HWVRAVRGNHEQMA 84 (218)
T ss_pred H--HHHHHHHH----CCCEEEECCHHHHH
T ss_conf 9--99999982----89849761479999
No 42
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=98.04 E-value=1.3e-05 Score=55.72 Aligned_cols=68 Identities=28% Similarity=0.422 Sum_probs=48.5
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCCCCCHHHHHHHH
Q ss_conf 2788994111427885410002221000121000001233089999999999626-997999937444489989999999
Q gi|255764495|r 9 MFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLH-NVDHVSITGDIVNFTCNREIFTST 87 (309)
Q Consensus 9 m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~-~pD~vvitGDl~~~~~~~~~~~~~ 87 (309)
|-+++ |+|+|=| .+.|+.+++.+.-. +-|.+++.||++++|+.. ....
T Consensus 1 m~tyv-IGDIHGc----------------------------~~el~~LL~ki~~~~~~D~lvflGDlVdRGP~S--~~vl 49 (275)
T PRK00166 1 MATYA-IGDIQGC----------------------------YDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDS--LETL 49 (275)
T ss_pred CCCEE-EEECCCC----------------------------HHHHHHHHHHCCCCCCCCEEEEECCEECCCCCH--HHHH
T ss_conf 98448-8775469----------------------------999999999628997788899956356899882--9999
Q ss_pred HHHHHHCCCCCEEEEECCCCCC
Q ss_conf 9998618997189994588422
Q gi|255764495|r 88 HWLRSIGNPHDISIVPGNHDAY 109 (309)
Q Consensus 88 ~~~~~l~~~~~v~~v~GNHD~~ 109 (309)
+++.++.. .+.+|.||||..
T Consensus 50 ~~v~~l~~--~~~~VlGNHE~~ 69 (275)
T PRK00166 50 RFVKSLGD--SAVVVLGNHDLH 69 (275)
T ss_pred HHHHHHCC--CCEEECCCHHHH
T ss_conf 99997126--707985643788
No 43
>TIGR00024 SbcD_rel_arch phosphoesterase, putative; InterPro: IPR004376 Members of this uncharacterised family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of Escherichia coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal..
Probab=98.03 E-value=1e-05 Score=56.41 Aligned_cols=86 Identities=21% Similarity=0.340 Sum_probs=56.5
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCH----HHHHHHHHHHHHCCCCEEEECCCCCCCC---CHHHH
Q ss_conf 8899411142788541000222100012100000123308----9999999999626997999937444489---98999
Q gi|255764495|r 11 VLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSK----EVANLLINDILLHNVDHVSITGDIVNFT---CNREI 83 (309)
Q Consensus 11 ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~i~~~~pD~vvitGDl~~~~---~~~~~ 83 (309)
+-+-|+|+|||-. ++...+....+. .+.+++..-+..-+...++++|||=+.. -|-++
T Consensus 16 ~~avIAD~HLGf~---------------~~~~~~G~~vP~~Q~~eii~r~~~I~e~yg~~~livaGDLKH~F~~~~P~~~ 80 (243)
T TIGR00024 16 DKAVIADLHLGFE---------------RYLDERGVAVPRLQVEEIIERVLSIVEKYGIEKLIVAGDLKHEFKKGLPLEW 80 (243)
T ss_pred CCEEEEEHHHCHH---------------HHHCCCCEECCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCH
T ss_conf 7058863000420---------------0005786143524389999998866655250515661011105889888228
Q ss_pred HHHH------HHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 9999------999861899718999458842222
Q gi|255764495|r 84 FTST------HWLRSIGNPHDISIVPGNHDAYIS 111 (309)
Q Consensus 84 ~~~~------~~~~~l~~~~~v~~v~GNHD~~~~ 111 (309)
+..+ ++++.+..-..+..|.||||.+..
T Consensus 81 ~~~reiirmmef~E~~~~yid~~~irGNHD~~i~ 114 (243)
T TIGR00024 81 KFVREIIRMMEFIEVVREYIDLILIRGNHDAYIA 114 (243)
T ss_pred HHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHH
T ss_conf 9999999998886410147899998067057899
No 44
>TIGR01530 nadN NAD nucleotidase; InterPro: IPR006420 This family describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5-nucleotidases and has NMN 5-nucleotidase activity for NMN, AMP, etc.; GO: 0008253 5'-nucleotidase activity.
Probab=97.84 E-value=0.0019 Score=41.51 Aligned_cols=190 Identities=18% Similarity=0.225 Sum_probs=91.3
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCC--------CCCH
Q ss_conf 788994111427885410002221000121000001233089999999999626-9979999374444--------8998
Q gi|255764495|r 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLH-NVDHVSITGDIVN--------FTCN 80 (309)
Q Consensus 10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~-~pD~vvitGDl~~--------~~~~ 80 (309)
++|+||.|=|==-+|..-++. ++-++-|...-...++..-++.++++ +=-+|+++||-.- .|+.
T Consensus 1 L~I~HINDHHS~LEP~~~~~~-------~~G~~~~~~~GGy~A~~~~~~~LR~~~KN~LVLHAGDA~~GTLY~TLF~G~A 73 (550)
T TIGR01530 1 LSILHINDHHSYLEPEELRLA-------LAGERLKVDVGGYAALVAKLNKLRKKYKNALVLHAGDALIGTLYFTLFRGRA 73 (550)
T ss_pred CEEEEEECCCCCCCCCCEEEE-------ECCCEEEEEECHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCH
T ss_conf 937887075576788530542-------0564355420306788999999888607863761103578888876317742
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHC---------CCCCCC--CCCCCCEEE-EECCCEE
Q ss_conf 9999999999861899718999458842222035676643245431---------344444--555621279-9719879
Q gi|255764495|r 81 REIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYIT---------SDTTCS--TGKKLFPYL-RIRNNIA 148 (309)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~~~~~-~~~~~~~ 148 (309)
. ...+..- ... |+..|||+....+.. +..+..++. .+.... ....++..+ +....+.
T Consensus 74 D-----A~~MN~~--~F~-yFTLGNHEFD~GNEG---L~~lL~~L~~PVLSANV~P~~~S~L~~~WKP~~I~~~~GE~I~ 142 (550)
T TIGR01530 74 D-----AVLMNAA--NFD-YFTLGNHEFDAGNEG---LKKLLEYLKVPVLSANVVPDKASILYNKWKPYDIVEVDGEKIA 142 (550)
T ss_pred H-----HHHHCCC--CCC-EEECCCCCCCCCCHH---HHHHHHHHCCCEEEECCCCCCCCHHHCCCCCCCEEEECCCEEE
T ss_conf 1-----2200047--965-032476233554558---9986444157635532577720011025785100353785899
Q ss_pred EEEECCCCCCC----CCCCCCEECH-HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH-CC
Q ss_conf 99832888888----7554760089-999999999852433697089998376888764311012797899999987-49
Q gi|255764495|r 149 LIGCSTAIATP----PFSANGYFGQ-EQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWH-EG 222 (309)
Q Consensus 149 ~i~l~s~~~~~----~~~~~g~~~~-~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~-~~ 222 (309)
+|||||...+. |...-..+++ +..+.....|+ ..|-..|+++-|.-+..++ ++.++ .+
T Consensus 143 ~IGLDTV~KTV~SSSPGKD~~F~DEI~~~~~~~~~l~---QQG~NKIILLSHAG~EKN~-------------EIAQ~~~~ 206 (550)
T TIGR01530 143 VIGLDTVKKTVESSSPGKDVKFIDEIEAVRIAAVELK---QQGVNKIILLSHAGFEKNI-------------EIAQKVSD 206 (550)
T ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---HCCCCEEEEEECCCCCCCC-------------HHHCCCCC
T ss_conf 9830343210235877886515657899999999876---3784346653117862240-------------20014266
Q ss_pred CEEEEECCCCC
Q ss_conf 81999987675
Q gi|255764495|r 223 ADLILHGHTHL 233 (309)
Q Consensus 223 v~lvl~GH~H~ 233 (309)
+|++.+|-+|-
T Consensus 207 IDVIV~GD~HY 217 (550)
T TIGR01530 207 IDVIVSGDSHY 217 (550)
T ss_pred EEEEEECCEEE
T ss_conf 00798577024
No 45
>pfam04042 DNA_pol_E_B DNA polymerase alpha/epsilon subunit B. This family contains a number of DNA polymerase subunits. The B subunit of the DNA polymerase alpha plays an essential role at the initial stage of DNA replication in S. cerevisiae and is phosphorylated in a cell cycle-dependent manner. DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication
Probab=97.58 E-value=0.0016 Score=42.02 Aligned_cols=76 Identities=17% Similarity=0.165 Sum_probs=53.9
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCH-----------
Q ss_conf 899411142788541000222100012100000123308999999999962699799993744448998-----------
Q gi|255764495|r 12 LAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCN----------- 80 (309)
Q Consensus 12 i~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~----------- 80 (309)
|+.+||+++... ....+.|+.+++...+.+||.+|++|..++....
T Consensus 1 iv~~Sg~~~~~d-----------------------~~~~~~L~~ll~~~~~~~p~~lIL~GpF~~~~~~~~~~~~~~~~~ 57 (205)
T pfam04042 1 IVFVSGLYLDGD-----------------------NKSLELLRDLLSGYNAAPPDRLVLAGPFLSAPHNLIASSAVNSTY 57 (205)
T ss_pred CEEEECCCCCCC-----------------------CCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 989926886888-----------------------664799999998761579958999788878876544356434572
Q ss_pred --HHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf --999999999986189971899945884222
Q gi|255764495|r 81 --REIFTSTHWLRSIGNPHDISIVPGNHDAYI 110 (309)
Q Consensus 81 --~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~ 110 (309)
........++.++...+++.+|||+||...
T Consensus 58 ~~~~~~~l~~~~~~i~~~~~vilvPg~~D~~~ 89 (205)
T pfam04042 58 DFVFLKLLDGILEQLLSSTPVILVPGPNDPTN 89 (205)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 17799999999876402685999489876656
No 46
>KOG4419 consensus
Probab=97.48 E-value=0.0024 Score=40.79 Aligned_cols=205 Identities=16% Similarity=0.177 Sum_probs=88.0
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHH-HHHHHHHHHCCCCEEEE-CCCCCCCCC-----HHH
Q ss_conf 78899411142788541000222100012100000123308999-99999996269979999-374444899-----899
Q gi|255764495|r 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVA-NLLINDILLHNVDHVSI-TGDIVNFTC-----NRE 82 (309)
Q Consensus 10 ~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~i~~~~pD~vvi-tGDl~~~~~-----~~~ 82 (309)
.++.|.||+|=.-..-.++. .+..+.-..+.+ ..+.+.+....+|.+++ +||+-+.-- ...
T Consensus 43 ~nf~hTtdthG~~~~h~~~~------------~~~~~~G~f~~f~~~~k~~a~~~~~dvl~~dtGD~hdGtg~sd~~~~~ 110 (602)
T KOG4419 43 PNFIHTTDTHGWLGSHLRDA------------RYDADFGDFAAFALRMKELADRKGVDVLLVDTGDLHDGTGLSDATDPP 110 (602)
T ss_pred CCCEEECCCCCCCCCCCCCH------------HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCCCC
T ss_conf 56223124544422346301------------133201307999999999874169987997354446884312204782
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCHH----HHHHHHHHHHHCCCCC---------CCCCCCCCEEEEECCCEE-
Q ss_conf 99999999861899718999458842222035----6766432454313444---------445556212799719879-
Q gi|255764495|r 83 IFTSTHWLRSIGNPHDISIVPGNHDAYISGAK----EKSLHAWKDYITSDTT---------CSTGKKLFPYLRIRNNIA- 148 (309)
Q Consensus 83 ~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~----~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~- 148 (309)
-.....++... ++. ....|||+.+..... ..+...|...+....- ...+...+ ++....++.
T Consensus 111 g~~t~~l~~~~--~yD-~l~lGNHEl~~~~ve~l~~~~f~~~~k~~~la~Nv~~~~~~~~~~p~~~~~~-t~~t~~~~~v 186 (602)
T KOG4419 111 GIYTNFLFKMM--PYD-ILTLGNHELYQANVENLTEEYFLPAWKGPYLASNVQIFDSSNSFVPFGLEYA-TFLTPHGVVV 186 (602)
T ss_pred HHHHHHHHHCC--CCC-HHHHCCHHHHHHHHHCCCHHHHHHHHCCCEEECCEEEECCCHHHCCCCCCCE-EEECCCCEEE
T ss_conf 57788887428--522-2220421444434202333555654046466111487458111052566635-8842675389
Q ss_pred -EEEECCCCCCCCCCCCCEECH---HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHC-CC
Q ss_conf -998328888887554760089---9999999998524336970899983768887643110127978999999874-98
Q gi|255764495|r 149 -LIGCSTAIATPPFSANGYFGQ---EQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHE-GA 223 (309)
Q Consensus 149 -~i~l~s~~~~~~~~~~g~~~~---~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~-~v 223 (309)
.+|.-++.....-...-.... .|.+|-..+++. .+...|++.-|-|+.....+.. ...++...+ ++
T Consensus 187 ~~vG~~~~~f~~~~n~~~v~~veei~~~~~~~~m~~~---~~idlii~lgH~~~~~~~e~~~------~~~~ir~~~p~t 257 (602)
T KOG4419 187 LAVGFLCASFSGAANRTVVVPVEEITQSEWEQDMVNT---TDIDLIIALGHSPVRDDDEWKS------LHAEIRKVHPNT 257 (602)
T ss_pred EEEEEEECCCCCCCCCCCCCCHHHHHCCCHHHHHHHC---CCCCEEEEECCCCCCCCHHHHH------HHHHHHHHCCCC
T ss_conf 9887862235566787633518987524268888515---6864899965566554066666------788876207998
Q ss_pred EE-EEECCCCCCEEEEE
Q ss_conf 19-99987675324787
Q gi|255764495|r 224 DL-ILHGHTHLNSLHWI 239 (309)
Q Consensus 224 ~l-vl~GH~H~~~~~~~ 239 (309)
++ ++-||.|.......
T Consensus 258 ~IqviGGHshird~a~~ 274 (602)
T KOG4419 258 PIQVIGGHSHIRDFAVY 274 (602)
T ss_pred CEEEECCHHHHHHHHHC
T ss_conf 50898761054553203
No 47
>KOG2863 consensus
Probab=97.44 E-value=0.0031 Score=40.12 Aligned_cols=176 Identities=14% Similarity=0.126 Sum_probs=92.1
Q ss_pred HHHHHHC---CCCEEEECCCCCCC---------CCHHHHHHHHHHHH----HHCCCCCEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 9999626---99799993744448---------99899999999998----61899718999458842222035676643
Q gi|255764495|r 57 INDILLH---NVDHVSITGDIVNF---------TCNREIFTSTHWLR----SIGNPHDISIVPGNHDAYISGAKEKSLHA 120 (309)
Q Consensus 57 ~~~i~~~---~pD~vvitGDl~~~---------~~~~~~~~~~~~~~----~l~~~~~v~~v~GNHD~~~~~~~~~~~~~ 120 (309)
+..+.+. +.|++++.||+--. +-|..|+....|.+ ++.+|++-.+|-|||+...... ...
T Consensus 20 i~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIFIGGNHEAsnyL~----eLp 95 (456)
T KOG2863 20 ISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIFIGGNHEASNYLQ----ELP 95 (456)
T ss_pred HHHHHHCCCCCCCEEEECCCHHHHCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHH----HCC
T ss_conf 9999870798730899716267642522122345887888887799881786037502799448657777887----565
Q ss_pred HHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCC----------CCCCCCCEEC----HHHHHHHHHHHHHCCCCC
Q ss_conf 24543134444455562127997198799983288888----------8755476008----999999999985243369
Q gi|255764495|r 121 WKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIAT----------PPFSANGYFG----QEQAHATSKLLRKANKKG 186 (309)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~----------~~~~~~g~~~----~~q~~~l~~~L~~~~~~~ 186 (309)
++.| .....-...+..+...++++|-|+..-+.. +|+... .+. -.+.+ -..|.+.+ +
T Consensus 96 yGGw----VApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh~E~ppyn~s-tiRsiYHvR~~d--V~~Lkqlk--~ 166 (456)
T KOG2863 96 YGGW----VAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGHFEWPPYNNS-TIRSIYHVRISD--VAKLKQLK--H 166 (456)
T ss_pred CCCE----ECCCEEEEEECCEEEECCEEEEECCCHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHHHH--HHHHHHHC--C
T ss_conf 6764----1352577520326878988882011010110002478789996411-223321123666--68887635--7
Q ss_pred CEEEEEEECCCCCCCCC----------------CCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEE-CCCCC
Q ss_conf 70899983768887643----------------1101279789999998749819999876753247871-69986
Q gi|255764495|r 187 FFRIIMMHHPPVLDTSS----------------LYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIK-NEKKL 245 (309)
Q Consensus 187 ~~~iv~~Hhpp~~~~~~----------------~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~-~~~~~ 245 (309)
..-|.+.|-=|...... ...+..++..+.++|..-...++|+-|.|.-+...++ +....
T Consensus 167 piDIfLSHDWP~GI~~yGd~~~LLr~KPFFrqeie~~~LGSp~~~eLL~~LkP~yWfsAHLH~KFaA~v~H~~~~~ 242 (456)
T KOG2863 167 PIDIFLSHDWPRGIYYYGDKKQLLRLKPFFRQEIEEGKLGSPALEELLEDLKPQYWFSAHLHVKFAALVQHNKRSH 242 (456)
T ss_pred CCEEEEECCCCCCHHHCCCHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 6237861678841410487998874380788887517768867999999707205246667667765420467677
No 48
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.0058 Score=38.33 Aligned_cols=183 Identities=13% Similarity=0.073 Sum_probs=95.3
Q ss_pred HHHHHHHCCCCEEEECCCCCC-CC-CH------------------------HHHHH------HHHHHHHHCCCCCEEEEE
Q ss_conf 999996269979999374444-89-98------------------------99999------999998618997189994
Q gi|255764495|r 56 LINDILLHNVDHVSITGDIVN-FT-CN------------------------REIFT------STHWLRSIGNPHDISIVP 103 (309)
Q Consensus 56 ~~~~i~~~~pD~vvitGDl~~-~~-~~------------------------~~~~~------~~~~~~~l~~~~~v~~v~ 103 (309)
+-+.+.++.||+||+.||-+. .| .+ ++|+. ...-++...+.+|.++.-
T Consensus 160 aY~~ma~~~~D~viH~GDyIYeyg~~~~~~~~~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~W 239 (522)
T COG3540 160 AYKTMAKEEPDFVIHLGDYIYEYGPIPDEVSLNSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQW 239 (522)
T ss_pred HHHHHHHCCCCEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHCCCCEEEEE
T ss_conf 99998735997799707755325886420124566665557788761366899765776641658789763039878885
Q ss_pred CCCCCCCCC--------------HH----HHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC-EEEEEECCCCCC------
Q ss_conf 588422220--------------35----67664324543134444455562127997198-799983288888------
Q gi|255764495|r 104 GNHDAYISG--------------AK----EKSLHAWKDYITSDTTCSTGKKLFPYLRIRNN-IALIGCSTAIAT------ 158 (309)
Q Consensus 104 GNHD~~~~~--------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~s~~~~------ 158 (309)
--|++.... .+ .+....|.+++.-...........+.....|+ ..+..||+-.+.
T Consensus 240 DDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A~qAyyE~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~ 319 (522)
T COG3540 240 DDHEVANNWSNSIDENDSRYDEKDFVLRAAAARQAYYEHMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCG 319 (522)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEEEEHHHHCCCCCCC
T ss_conf 34211145444554357777827799999999999987484304368865002564235640020132103212356667
Q ss_pred CC---------CCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--------------CCCCCCCCCCCCHHHHH
Q ss_conf 87---------55476008999999999985243369708999837688--------------87643110127978999
Q gi|255764495|r 159 PP---------FSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPV--------------LDTSSLYNRMFGIQRFQ 215 (309)
Q Consensus 159 ~~---------~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~--------------~~~~~~~~~~~~~~~l~ 215 (309)
.+ ......++..|.+||++.|...+. ++.|+..--|.. ...+.|..--.++++|.
T Consensus 320 dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~Ska--tWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl 397 (522)
T COG3540 320 DGNPPNCQAVAGSAATMLGEQQEQWLKRGLGASKA--TWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLL 397 (522)
T ss_pred CCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCH--HHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 99862344552734220106799999735430401--1665452062467633787544686555667677762689999
Q ss_pred HHHHHCCCE--EEEECCCCCCEEEEEE
Q ss_conf 999874981--9999876753247871
Q gi|255764495|r 216 KMIWHEGAD--LILHGHTHLNSLHWIK 240 (309)
Q Consensus 216 ~~l~~~~v~--lvl~GH~H~~~~~~~~ 240 (309)
..++..++. ++|.|.+|......++
T Consensus 398 ~fi~~~~~~N~V~LtgDvH~~wA~~l~ 424 (522)
T COG3540 398 RFIADRKIRNTVVLTGDVHYSWAHDLD 424 (522)
T ss_pred HHHHHCCCCCCEEEECHHHHHHHHHCC
T ss_conf 999862888847994436787775348
No 49
>cd00144 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, including PP1, PP2A and PP2B (calcineurin) family members.
Probab=97.19 E-value=0.02 Score=34.85 Aligned_cols=198 Identities=11% Similarity=0.076 Sum_probs=82.2
Q ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCC-----CCCCCCCCCCE
Q ss_conf 9799993744448998999999999986189971899945884222203567664324543134-----44445556212
Q gi|255764495|r 65 VDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSD-----TTCSTGKKLFP 139 (309)
Q Consensus 65 pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 139 (309)
..-.|+.||.+|+|.-.-.....-+.-.+..|..|+.+.|||+.........+.......+... ....+. ..|
T Consensus 55 ~~~ylFLGDYVDRG~~slEvi~lL~~lKi~~P~~v~LLRGNHE~~~~n~~ygF~~E~~~ky~~~~v~~~~~~~F~--~LP 132 (269)
T cd00144 55 DDNYLFLGDYVDRGPQSIEVILLLFALKILYPNNFFLLRGNHESPSINKIYGFYDECKRKYGEKRIWKIFNDVFS--WLP 132 (269)
T ss_pred CCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCC
T ss_conf 553883465306778774999999999985988489607776262012334778886552594899999999985--370
Q ss_pred EEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC-----CCCCCCCCCCCHHHH
Q ss_conf 799719879998328888887554760089999999999852433697089998376888-----764311012797899
Q gi|255764495|r 140 YLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVL-----DTSSLYNRMFGIQRF 214 (309)
Q Consensus 140 ~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~-----~~~~~~~~~~~~~~l 214 (309)
..-..++ .++++-.... +.. -.-+++....+...+....+...-+++--|-.. ++.....-..+.+.+
T Consensus 133 laaiI~~-~ifcvHGGi~--~~~----~~~~~i~~~~~~~~~~~~~~~~~dlLWsDP~~~~~~~~~s~RG~g~~fG~~~~ 205 (269)
T cd00144 133 LAALIGQ-RILCMHGGLS--PDL----SSLDDIRKNLDRPKEPPDDGLACDLLWSDPDDDVPGWGPSTRGASYYFGEDVV 205 (269)
T ss_pred HHEEECC-EEEEECCCCC--CCC----CCHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCHHHH
T ss_conf 5337768-0899579888--666----62888986207888998767453335337776668873599986235798999
Q ss_pred HHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 99998749819999876753247871699868999957623577888877854899995389
Q gi|255764495|r 215 QKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKN 276 (309)
Q Consensus 215 ~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~ 276 (309)
.+.+++.+.++++-||.=...-..+. .++. ++.+-|++..-.. .++.=.++.|+++.
T Consensus 206 ~~Fl~~n~l~~IIR~He~~~~G~~~~-~~~~--~iTvFSa~nY~~~--~~N~ga~l~i~~~~ 262 (269)
T cd00144 206 DEFLERNNLDLIIRAHEVVDDGYEFF-ADGK--LITVFSAPNYCGQ--FGNAAAVLKVDGNL 262 (269)
T ss_pred HHHHHHCCCEEEEEECCCCCCCEEEE-CCCC--EEEEECCCCCCCC--CCCCEEEEEECCCC
T ss_conf 99999889848998140343630894-5996--9998008743688--88757999999996
No 50
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=96.82 E-value=0.002 Score=41.30 Aligned_cols=165 Identities=13% Similarity=-0.029 Sum_probs=90.2
Q ss_pred CCEEEECCCCCCCCCHH-----HHHHHHHHHHHHC-------CCCCEEEEECCCCCCCCCHH---HHHHHHHHHHHC---
Q ss_conf 97999937444489989-----9999999998618-------99718999458842222035---676643245431---
Q gi|255764495|r 65 VDHVSITGDIVNFTCNR-----EIFTSTHWLRSIG-------NPHDISIVPGNHDAYISGAK---EKSLHAWKDYIT--- 126 (309)
Q Consensus 65 pD~vvitGDl~~~~~~~-----~~~~~~~~~~~l~-------~~~~v~~v~GNHD~~~~~~~---~~~~~~~~~~~~--- 126 (309)
|=.+|.-||+++.+.+. |-..++++-.+.. .-+|||+-.||||.-..... .-+-+...++..
T Consensus 127 plGlV~ggDitddgggq~~qprEg~ql~qf~~RYsq~vG~~h~H~PvYvGlgnhdldq~gpph~~DWyRrElrdyve~~H 206 (392)
T COG5555 127 PLGLVEGGDITDDGGGQSFQPREGNQLKQFELRYSQDVGNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRRELRDYVENYH 206 (392)
T ss_pred CEEEEEECCEECCCCCCCCCCCCCCHHHCHHHHHCCCCCCCEEEEEEEECCCCHHHCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 32678611132168873457655531214576631277873465535763572122025999740689988789998603
Q ss_pred --------CCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf --------344444555621279971987999832888888755476008999999999985243369708999837688
Q gi|255764495|r 127 --------SDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPV 198 (309)
Q Consensus 127 --------~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~ 198 (309)
.............|....++++++-+........ ......+-|++..|......+.+++++.|+.=.
T Consensus 207 r~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf~Gd~~-----~ga~sslpwlk~dl~~~aadgrpv~LfqhyGwd 281 (392)
T COG5555 207 RSDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRFIGDAE-----PGANSSLPWLKVDLIYSAADGRPVYLFQHYGWD 281 (392)
T ss_pred CCCCCCCCCCCCCCCCCCCHHEECCCCCEEEEEEEEECCCCC-----CCCCCCCCCEECCCEEECCCCCCEEEHHHHCCC
T ss_conf 767666899885433201011001343135788764215667-----776556731211202112579836631220710
Q ss_pred CCCC-CC--C--------------CCCCCHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 8764-31--1--------------01279789999998749819999876753
Q gi|255764495|r 199 LDTS-SL--Y--------------NRMFGIQRFQKMIWHEGADLILHGHTHLN 234 (309)
Q Consensus 199 ~~~~-~~--~--------------~~~~~~~~l~~~l~~~~v~lvl~GH~H~~ 234 (309)
...+ .| . ..-.+...+...++.|++..+++||.|.-
T Consensus 282 tfsteawdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYNvvg~fhGhkhd~ 334 (392)
T COG5555 282 TFSTEAWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYNVVGTFHGHKHDF 334 (392)
T ss_pred CEECCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCC
T ss_conf 01021368300133668998998788987105888643750677515633564
No 51
>KOG3325 consensus
Probab=96.82 E-value=0.035 Score=33.16 Aligned_cols=97 Identities=21% Similarity=0.191 Sum_probs=55.8
Q ss_pred CCEEEEEEECC-CCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCC---CC
Q ss_conf 97089998376-888764311012797899999987498199998767532478716998689999576235778---88
Q gi|255764495|r 186 GFFRIIMMHHP-PVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVH---SN 261 (309)
Q Consensus 186 ~~~~iv~~Hhp-p~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~---~~ 261 (309)
+.++|-++|.. .++.. +.+.+.-+-++..||+++.||+|.-.....+| -.+++-+|++..+. .+
T Consensus 78 GqfkIG~chGhqViP~g--------d~~sL~~LaRqldvDILl~G~Th~f~Aye~eg----~ffvnPGSaTGAfn~~~t~ 145 (183)
T KOG3325 78 GQFKIGLCHGHQVIPWG--------DPESLALLARQLDVDILLTGHTHKFEAYEHEG----KFFVNPGSATGAFNVSDTD 145 (183)
T ss_pred CCEEEEEECCCEEECCC--------CHHHHHHHHHHCCCCEEEECCCEEEEEEEECC----CEEECCCCCCCCCCCCCCC
T ss_conf 41788765475762389--------98999999975497599967813589998478----0996787555777632357
Q ss_pred CCCCCEEEEEEECCCCEEEEEEEEEECCCCCEEEEEC
Q ss_conf 8778548999953898389999995137761157531
Q gi|255764495|r 262 KPQASYNLFYIEKKNEYWTLEGKRYTLSPDSLSIQKD 298 (309)
Q Consensus 262 ~~~~~y~li~i~~~~~~~~v~~~r~~~~~d~~~~~~~ 298 (309)
...+||-|.+|... .+.++-|.+..+.--+++-
T Consensus 146 ~~~PSFvLmDiqg~----~~v~YvY~lidgeVkVdki 178 (183)
T KOG3325 146 IIVPSFVLMDIQGS----TVVTYVYRLIDGEVKVDKI 178 (183)
T ss_pred CCCCCEEEEEECCC----EEEEEEEEEECCCEEEEEE
T ss_conf 77774699971287----7999980404882788999
No 52
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.40 E-value=0.077 Score=30.93 Aligned_cols=197 Identities=12% Similarity=0.125 Sum_probs=81.1
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHH----HHHHHHHCCCCCCCCCCCCCEEE
Q ss_conf 79999374444899899999999998618997189994588422220356766----43245431344444555621279
Q gi|255764495|r 66 DHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSL----HAWKDYITSDTTCSTGKKLFPYL 141 (309)
Q Consensus 66 D~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 141 (309)
+-.|+.||.+|+|...--....-+.-++.-|..|+.+.|||+.........+. ..+...........+. ..|..
T Consensus 56 ~~ylFLGDYVDRG~~s~Evi~lL~~lKi~~P~~v~lLRGNHE~~~~~~~ygF~~E~~~kyg~~i~~~~~~~F~--~LPla 133 (271)
T smart00156 56 TNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYGEEIYEKFQEAFS--WLPLA 133 (271)
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHCCCCCHHHHHHHHCCHHHHHHHHHHHH--HCCHH
T ss_conf 6289504420568774289999999998699859971688656655467783788875538999999999984--27152
Q ss_pred EECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC-----CCCCCCCCCCCHHHHHH
Q ss_conf 9719879998328888887554760089999999999852433697089998376888-----76431101279789999
Q gi|255764495|r 142 RIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVL-----DTSSLYNRMFGIQRFQK 216 (309)
Q Consensus 142 ~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~-----~~~~~~~~~~~~~~l~~ 216 (309)
-..++ .++++...... ..-.-+++..+.+-.... ..+...-+++--|-.. .......-.-+.+.+.+
T Consensus 134 aiI~~-~i~cvHGGi~~------~~~~l~~i~~i~r~~~~~-~~~~~~dllWsDP~~~~~~~~~s~Rg~g~~fg~~~~~~ 205 (271)
T smart00156 134 ALIDN-KILCMHGGLSP------DLTTLDDIRKLKRPQEPP-DEGLLIDLLWSDPDQPVDGFQPSIRGASYYFGPDAVDE 205 (271)
T ss_pred EEECC-EEEEECCCCCC------CCCCHHHHHHCCCCCCCC-CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 37747-18995687786------678799997388988899-85313314532877667984569999761279899999
Q ss_pred HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 9987498199998767532478716998689999576235778888778548999953898
Q gi|255764495|r 217 MIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKNE 277 (309)
Q Consensus 217 ~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~~ 277 (309)
.+++.+.++++-||.=.+.-..+. .++.+ +..-|++.. -+..++.-.++.|+++..
T Consensus 206 Fl~~n~l~~IIR~He~~~~G~~~~-~~~~~--iTvFSa~nY--~~~~~N~gavl~i~~~~~ 261 (271)
T smart00156 206 FLKKNNLKLIIRAHQVVDDGYEFF-HDRKL--VTIFSAPNY--CGRFGNKAAVLKVDKDLK 261 (271)
T ss_pred HHHHCCCEEEEECCCCCCCCEEEE-CCCCE--EEEECCCCC--CCCCCCCEEEEEECCCCC
T ss_conf 999889858986263565710893-59968--999408862--678886579999989996
No 53
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=96.03 E-value=0.12 Score=29.68 Aligned_cols=196 Identities=13% Similarity=0.114 Sum_probs=84.2
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCC----CCCCCCCCCCCEEE
Q ss_conf 79999374444899899999999998618997189994588422220356766432454313----44444555621279
Q gi|255764495|r 66 DHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITS----DTTCSTGKKLFPYL 141 (309)
Q Consensus 66 D~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 141 (309)
.--++.||.+|+|.-.--..+.-+.-++.-|..|+.+.|||+.........+.......+.. .....+. ..|..
T Consensus 80 ~~YlFLGDYVDRG~~SlEvi~lL~alKi~yP~~v~LLRGNHE~~~~n~~yGF~~E~~~ky~~~i~~~f~~~F~--~LPla 157 (294)
T PTZ00244 80 SNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYNIKLFKAFTDVFN--TMPVC 157 (294)
T ss_pred CCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHH--HCHHH
T ss_conf 5688215535777653099999999986488808962787647355677886899998817899999999985--36176
Q ss_pred EECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC-----CCCCCCCCCCCHHHHHH
Q ss_conf 9719879998328888887554760089999999999852433697089998376888-----76431101279789999
Q gi|255764495|r 142 RIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVL-----DTSSLYNRMFGIQRFQK 216 (309)
Q Consensus 142 ~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~-----~~~~~~~~~~~~~~l~~ 216 (309)
-..++ .++++.... .|. ...-+++..+++-.. .+..+...-+++--|-.. .+......+-+.+.+.+
T Consensus 158 AiI~~-kifcvHGGi--sp~----l~~l~~I~~i~Rp~~-~~~~~~~~dlLWSDP~~~~~g~~~s~RG~g~~FG~~~~~~ 229 (294)
T PTZ00244 158 CVISE-KIICMHGGL--SPD----LTSLASVNEIERPCD-VPDRGILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVND 229 (294)
T ss_pred HHHCC-CCEECCCCC--CCC----CCCHHHHHHCCCCCC-CCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECCHHHHHH
T ss_conf 85167-631116887--877----777999964758877-8988845001643885546896668998534578899999
Q ss_pred HHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 998749819999876753247871699868999957623577888877854899995389
Q gi|255764495|r 217 MIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKN 276 (309)
Q Consensus 217 ~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~ 276 (309)
.+++.+.++++-||.-...-.... .++. ++.+-|++..-. ..++.=+++.|+++.
T Consensus 230 Fl~~n~l~~IIR~Hq~v~~Gy~~~-~~~~--~iTVFSA~nYcg--~~~N~gavl~i~~~l 284 (294)
T PTZ00244 230 FLDMVDMDLIVRAHQVMERGYGFF-ASRQ--LVTVFSAPNYCG--EFDNDAAVMNIDDKL 284 (294)
T ss_pred HHHHCCCCEEEECCCCHHCCCEEC-CCCC--EEEEECCCCCCC--CCCCCEEEEEECCCC
T ss_conf 999879928998672443520163-7997--999953801165--878757999999998
No 54
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=95.98 E-value=0.13 Score=29.55 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=31.2
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 79999374444899899999999998618997189994588422220
Q gi|255764495|r 66 DHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISG 112 (309)
Q Consensus 66 D~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~ 112 (309)
---++.||.+|+|.-.--..+.-+.-++.-|..|+.+.|||+.....
T Consensus 71 ~~YlFLGDYVDRG~~s~Evi~lL~alKv~yP~~v~LLRGNHE~~~~n 117 (303)
T PTZ00239 71 HNYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNIVLLRGNHESRQCT 117 (303)
T ss_pred CCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCC
T ss_conf 65884786326788742899999999975898278605677473556
No 55
>KOG0374 consensus
Probab=95.39 E-value=0.16 Score=28.88 Aligned_cols=198 Identities=13% Similarity=0.131 Sum_probs=83.6
Q ss_pred C-CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCCCCCCCCCCEE
Q ss_conf 9-79999374444899899999999998618997189994588422220356766432454313---4444455562127
Q gi|255764495|r 65 V-DHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITS---DTTCSTGKKLFPY 140 (309)
Q Consensus 65 p-D~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 140 (309)
| .-.++.||.+|+|...-.....-+.-.+.-|..++...|||+.........+.....+.+.. +.........-+.
T Consensus 86 p~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~~~~w~~F~~~f~~mp~ 165 (331)
T KOG0374 86 PDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGEIKLWKAFNDAFNCLPL 165 (331)
T ss_pred CCCCEEEECCCCCCCCCCEEEEEHHHHHHHHCCCEEEEECCCCCCCCCCCEEEHHHHHHHHCCHHHHHHHHHHHHHHCCH
T ss_conf 85528984553368866358775254434007863999536665765312022089999862328899999999864856
Q ss_pred EEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC------CCCCCCHHHH
Q ss_conf 9971987999832888888755476008999999999985243369708999837688876431------1012797899
Q gi|255764495|r 141 LRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSL------YNRMFGIQRF 214 (309)
Q Consensus 141 ~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~------~~~~~~~~~l 214 (309)
.-..++ ++.+..... .+. ...-+|+..+.+-+. .++.+-..-+++-+|-.. ...| ...+.+...+
T Consensus 166 ~a~i~~-kI~CmhGGl--sp~----l~~~~~i~~i~rp~~-~~~~gll~DLlWsdp~~~-~~g~~~n~Rg~s~~fg~~~v 236 (331)
T KOG0374 166 AALIDG-KILCMHGGL--SPH----LKSLDQIRAIPRPTD-SPDKGLLCDLLWSDPDDD-VPGWEENDRGVSFTFGPAVV 236 (331)
T ss_pred HHEECC-CEEEECCCC--CHH----HCCHHHHHHCCCCCC-CCCCCEEEEEEECCCCCC-CCCCCCCCCCEEEEECHHHH
T ss_conf 434546-078864877--720----067688863558766-876320100240278888-67734478842067367999
Q ss_pred HHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 99998749819999876753247871699868999957623577888877854899995389
Q gi|255764495|r 215 QKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKN 276 (309)
Q Consensus 215 ~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~ 276 (309)
.+.+.+.+.+++.-+|.=...-...-.....+.+.++|.-+... .+.-.+..++++.
T Consensus 237 ~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~Ycg~~-----~n~gavm~Vd~~l 293 (331)
T KOG0374 237 EDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPNYCGEF-----DNAGAVMRVDKNL 293 (331)
T ss_pred HHHHHHHCCCEEEECCCCCHHHCEEECCCEEEEEECCCHHCCCC-----CCCCEEEEECCCC
T ss_conf 99987718546987573554120283586499995471322165-----7841899988897
No 56
>pfam06874 FBPase_2 Firmicute fructose-1,6-bisphosphatase. This family consists of several bacterial fructose-1,6-bisphosphatase proteins (EC:3.1.3.11) which seem to be specific to phylum Firmicutes. Fructose-1,6-bisphosphatase (FBPase) is a well known enzyme involved in gluconeogenesis. This family does not seem to be structurally related to pfam00316.
Probab=95.25 E-value=0.014 Score=35.89 Aligned_cols=56 Identities=32% Similarity=0.326 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 9999999996269979999374444899899999999998618997189994588422220
Q gi|255764495|r 52 VANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISG 112 (309)
Q Consensus 52 ~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~ 112 (309)
++.++-..|+..-.|.+-|.|||.|+|+... .+++.|-.-..|-+.-||||+.|.+
T Consensus 172 fIial~~lIqrL~VDhLHIvGDIyDRGp~pd-----~ImD~Lm~~hsvDIQWGNHDilWMG 227 (641)
T pfam06874 172 FIIALSNLIQRLVVDHLHIVGDIYDRGPGPD-----IIMDTLINYHSVDIQWGNHDILWMG 227 (641)
T ss_pred HHHHHHHHHHHHHHHHHEECCCCCCCCCCHH-----HHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 9999999998886645112153557899824-----9999986167744221652888877
No 57
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=95.08 E-value=0.26 Score=27.48 Aligned_cols=196 Identities=12% Similarity=0.016 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCC--CCCCCCH------HHH---HHHHHHHHHHCCCCCEEEEECCCCCCCC-CHHH
Q ss_conf 30899999999996269979999374--4448998------999---9999999861899718999458842222-0356
Q gi|255764495|r 48 FSKEVANLLINDILLHNVDHVSITGD--IVNFTCN------REI---FTSTHWLRSIGNPHDISIVPGNHDAYIS-GAKE 115 (309)
Q Consensus 48 ~~~~~l~~~~~~i~~~~pD~vvitGD--l~~~~~~------~~~---~~~~~~~~~l~~~~~v~~v~GNHD~~~~-~~~~ 115 (309)
.....++.+...++ +.|+.++.=- ++....+ ..+ ....+.+... ...+..+.-||=.-.. ....
T Consensus 18 ~~~~~~~~v~~~~~--~aD~~~~NlE~~i~~~~~~~~~~~~~~f~~~~~~~~~L~~~--G~d~~slANNH~~D~G~~Gl~ 93 (239)
T smart00854 18 DFSPPFAGVKPLLR--AADLAIGNLETPITGSGSPASGKKYPNFRAPPENAAALKAA--GFDVVSLANNHSLDYGEEGLL 93 (239)
T ss_pred CCHHHHHHHHHHHH--HCCEEEEECCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHC--CCCEEEECCCCCCCCCHHHHH
T ss_conf 83578999999997--49999996402662899878777661202999999999982--999899317634312089999
Q ss_pred HHHHHHHHHHCCCC--CCCCCCCCCEEEEECCCEEEEEECCCCCCCC-----CCCCC--EECHHHHHHHHHHHHHCCCCC
Q ss_conf 76643245431344--4445556212799719879998328888887-----55476--008999999999985243369
Q gi|255764495|r 116 KSLHAWKDYITSDT--TCSTGKKLFPYLRIRNNIALIGCSTAIATPP-----FSANG--YFGQEQAHATSKLLRKANKKG 186 (309)
Q Consensus 116 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~-----~~~~g--~~~~~q~~~l~~~L~~~~~~~ 186 (309)
.....+.+.-.... .........+.....++..+..+..+....+ ....+ .+.....+.+.+.+++++...
T Consensus 94 ~Ti~~L~~~gi~~~G~g~~~~~a~~p~~~~~~g~~va~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~k~~~ 173 (239)
T smart00854 94 DTLAALDAAGIAHVGAGRNLAEARKPAIVEVKGIKIALLAYTYGTNNGWAASKDRPGVALLPDLDREKILADIARARKKA 173 (239)
T ss_pred HHHHHHHHCCCCCCCCCCCHHHCCCCEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999998699615898995773782899989989999998707788643778998712157017999999999885279
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 7089998376888764311012797899999987498199998767532478716998689999576
Q gi|255764495|r 187 FFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIAS 253 (309)
Q Consensus 187 ~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s 253 (309)
-.+|+.+|........ ......++...+.+.|+|+|+..|-|..+-..+.. +...+++.|.
T Consensus 174 D~vIv~~HwG~E~~~~----p~~~q~~~a~~lid~GaD~IiGhHpHv~q~~E~y~--~k~I~YSLGN 234 (239)
T smart00854 174 DVVIVSLHWGVEYQYE----PTDEQRELAHALIDAGADVVIGHHPHVLQPIEIYK--GKLIAYSLGN 234 (239)
T ss_pred CEEEEEEECCCCCCCC----CCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEC--CEEEEEECCC
T ss_conf 9999993015778779----99999999999997699999928998788749999--9999996720
No 58
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical); InterPro: IPR004617 Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) (3.6.1.41 from EC). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase .; GO: 0008803 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity.
Probab=94.62 E-value=0.032 Score=33.42 Aligned_cols=56 Identities=27% Similarity=0.477 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHC-CCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 9999999999626-99799993744448998999999999986189971899945884222
Q gi|255764495|r 51 EVANLLINDILLH-NVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYI 110 (309)
Q Consensus 51 ~~l~~~~~~i~~~-~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~ 110 (309)
+-+..+++.+.=. .-|-+.++|||+-+|... -...++.+.|+... -.|.||||...
T Consensus 14 DEl~~LL~~V~F~P~~D~LyL~GDLvARG~~S--L~~LR~VKSLG~~~--r~VLgNHDLHl 70 (280)
T TIGR00668 14 DELQLLLERVEFDPAQDTLYLTGDLVARGDGS--LEVLRYVKSLGNAA--RLVLGNHDLHL 70 (280)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEEEEECCCHH--HHHHHHHHHHHHHH--HHHHHCCHHHH
T ss_conf 89999998624788865467851133127405--77888887544688--88872020899
No 59
>pfam09587 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=92.90 E-value=0.68 Score=24.70 Aligned_cols=216 Identities=14% Similarity=0.064 Sum_probs=92.9
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEC--CCCCCCCCH----HHH-
Q ss_conf 8899411142788541000222100012100000123308999999999962699799993--744448998----999-
Q gi|255764495|r 11 VLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSIT--GDIVNFTCN----REI- 83 (309)
Q Consensus 11 ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvit--GDl~~~~~~----~~~- 83 (309)
+|+.+.|+-|+...... .........++.+...++ ..|++++. +=++..+.+ ..+
T Consensus 1 tl~f~GDi~l~~~~~~~----------------~~~~d~~~~~~~v~~~l~--~aD~~i~NlE~~~~~~~~~~~~~~~f~ 62 (237)
T pfam09587 1 TLAFVGDVMLGRGLDQI----------------APPYDFDYPFADVKPLLR--AADLAIGNLETPITDSGEPYSGKPAFR 62 (237)
T ss_pred CEEEEEEECCCCCHHHH----------------HCCCCCHHHHHHHHHHHH--HCCEEEEEECCCCCCCCCCCCCCCEEE
T ss_conf 96998646168845665----------------104880788999999986--199869981136548898789981577
Q ss_pred --HHHHHHHHHHCCCCCEEEEECCCCCCCCC-HHHHHHHHHHHHHCCCC--CCCCCCCCCEEEEECCCEEEEEECCCCCC
Q ss_conf --99999998618997189994588422220-35676643245431344--44455562127997198799983288888
Q gi|255764495|r 84 --FTSTHWLRSIGNPHDISIVPGNHDAYISG-AKEKSLHAWKDYITSDT--TCSTGKKLFPYLRIRNNIALIGCSTAIAT 158 (309)
Q Consensus 84 --~~~~~~~~~l~~~~~v~~v~GNHD~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~l~s~~~~ 158 (309)
....+.+..+ ...+..+.-||=.-... ..........+.-.... .........+.....++..+..+.-+...
T Consensus 63 ~~~~~~~~L~~~--G~d~vslANNH~~D~G~~G~~~T~~~L~~~gi~~~G~g~~~~~a~~p~~~~~~g~kia~l~~t~~~ 140 (237)
T pfam09587 63 APPENAEALKAA--GFDVVSLANNHSLDYGEEGLLDTLDALDRAGIAHAGAGRNLEEARRPAILEVNGIRIAFLAYTYGT 140 (237)
T ss_pred CCHHHHHHHHHC--CCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCEEEEECCCEEEEEEEECCC
T ss_conf 999999999984--999999577643325779999999999987996058889946627808999799389999987587
Q ss_pred C----CCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 8----755476008999999999985243369708999837688876431101279789999998749819999876753
Q gi|255764495|r 159 P----PFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLN 234 (309)
Q Consensus 159 ~----~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~ 234 (309)
. +....+ ......+.+.+.+++++.+.-.+|+.+|....... .......++...+.+.|+|+|+..|-|..
T Consensus 141 ~~~~~~~~~~~-~~~~~~~~i~~~i~~~k~~~D~vIv~~HwG~E~~~----~p~~~q~~~a~~lidaGaDlIiGhHpHv~ 215 (237)
T pfam09587 141 NGWGAGPYRPG-VNPLDEEKIKADIRRAKKKADIVIVSLHWGVEYQY----EPTPEQRELAHALIDAGADLVIGHHPHVL 215 (237)
T ss_pred CCCCCCCCCCC-CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC----CCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 87567888875-57569999999999875079999998775667876----99999999999999779999991899878
Q ss_pred EEEEEECCCCCEEEEEECC
Q ss_conf 2478716998689999576
Q gi|255764495|r 235 SLHWIKNEKKLIPVVGIAS 253 (309)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~s 253 (309)
+-..+. .+...+++.|.
T Consensus 216 q~iE~y--~~~~I~YSLGN 232 (237)
T pfam09587 216 QPIEVY--KGKLIAYSLGN 232 (237)
T ss_pred CCEEEE--CCEEEEEECCC
T ss_conf 874999--99999996720
No 60
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=92.72 E-value=0.72 Score=24.54 Aligned_cols=164 Identities=15% Similarity=0.062 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999962699799993744448998999999999986189971899945884222203567664324543134444
Q gi|255764495|r 52 VANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTC 131 (309)
Q Consensus 52 ~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~ 131 (309)
+.+.+-..-.+.++|+|++.|--+-.|.--..+.+.++++ . ...| +..|||-...+...+- ........+...-.
T Consensus 18 v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~y~~l~~-~--G~dv-iT~GNH~wd~~ei~~~-i~~~~~ilRP~N~p 92 (266)
T COG1692 18 VKEHLPQLKSKYKIDFVIVNGENAAGGFGITEKIYKELLE-A--GADV-ITLGNHTWDQKEILDF-IDNADRILRPANYP 92 (266)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHH-H--CCCE-EECCCCCCCCHHHHHH-HHCCCCEECCCCCC
T ss_conf 9987077787506738998573045776777999999998-5--8878-9626633344577877-63344254357788
Q ss_pred CCCCCCCEEEEECCCEEEEEEC--CCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 4555621279971987999832--88888875547600899999999998524336970899983768887643110127
Q gi|255764495|r 132 STGKKLFPYLRIRNNIALIGCS--TAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMF 209 (309)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~i~l~--s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~ 209 (309)
..-.+..+.+....+..+...| .-....+. + ..-+.-+++.+...+......+|-+|.--.+.-.
T Consensus 93 ~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~-----~-d~PF~~~d~l~~~~~~~~~~iiVDFHAEtTSEK~------- 159 (266)
T COG1692 93 DGTPGKGSRIFKINGKKLAVINLMGRVFMPPA-----L-DNPFKAADKLLDEIKLGTDLIIVDFHAETTSEKN------- 159 (266)
T ss_pred CCCCCCEEEEEEECCCEEEEEEEECCCCCCCC-----C-CCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHH-------
T ss_conf 89986347999968928999984313358600-----1-7978999999974746896499981265215552-------
Q ss_pred CHHHHHHHHHHCCCEEEEECCCCCCEEE
Q ss_conf 9789999998749819999876753247
Q gi|255764495|r 210 GIQRFQKMIWHEGADLILHGHTHLNSLH 237 (309)
Q Consensus 210 ~~~~l~~~l~~~~v~lvl~GH~H~~~~~ 237 (309)
...+.....+.+++-=|+|.+...
T Consensus 160 ----a~g~yldGrvsavvGTHTHV~TaD 183 (266)
T COG1692 160 ----AFGWYLDGRVSAVVGTHTHVPTAD 183 (266)
T ss_pred ----HHHEEECCEEEEEEECCCCCCCCC
T ss_conf ----010688672889985467655641
No 61
>PRK10425 DNase TatD; Provisional
Probab=91.99 E-value=0.89 Score=23.96 Aligned_cols=127 Identities=19% Similarity=0.089 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999962699799993744448998999999999986189971899945884222203567664324543134444
Q gi|255764495|r 52 VANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTC 131 (309)
Q Consensus 52 ~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~ 131 (309)
-++.+++.+++.+.+.+++.|= .++++..+.++.+... .++...|=|=....................
T Consensus 16 d~~~vl~rA~~~gV~~ii~~g~-----~~~~~~~~~~la~~~~---~v~~~~GiHP~~~~~~~~~~~~~l~~~~~~---- 83 (258)
T PRK10425 16 DRDDVVARAFAAGVNGLLITGT-----NLRESQQAQKLARQYP---SCWSTAGVHPHDSSQWQAATEEAIIELAAQ---- 83 (258)
T ss_pred CHHHHHHHHHHCCCCEEEEECC-----CHHHHHHHHHHHHHCC---CCEEEECCCCHHHHHCCHHHHHHHHHHHCC----
T ss_conf 8999999999879998999469-----9999999999998688---735983358123323685789999998548----
Q ss_pred CCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCH
Q ss_conf 45556212799719879998328888887554760089999999999852433697089998376888764311012797
Q gi|255764495|r 132 STGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGI 211 (309)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~ 211 (309)
+.+. .+.-+|||-.... .....|..+++++|+-+..-+.+++ .|.- .-.
T Consensus 84 -------~~~v---AIGEiGLDy~~~~-------~~~~~Q~~~F~~ql~lA~~~~lPvi--iH~R------------~A~ 132 (258)
T PRK10425 84 -------PEVV---AIGECGLDFNRNF-------STPEEQERAFVAQLRIAAELNMPVF--MHCR------------DAH 132 (258)
T ss_pred -------CCEE---EEEECCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHCCCEE--EEEC------------CCH
T ss_conf -------9827---9961221677568-------9999999999999999999799879--9964------------415
Q ss_pred HHHHHHHHHC
Q ss_conf 8999999874
Q gi|255764495|r 212 QRFQKMIWHE 221 (309)
Q Consensus 212 ~~l~~~l~~~ 221 (309)
+++.++|+++
T Consensus 133 ~~~l~iL~~~ 142 (258)
T PRK10425 133 ERFLTLLEPW 142 (258)
T ss_pred HHHHHHHHHH
T ss_conf 8999999997
No 62
>PRK09982 universal stress protein UspD; Provisional
Probab=91.78 E-value=0.93 Score=23.81 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=57.8
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCC
Q ss_conf 99993744448998999999999986189971899945884222203567664324543134444455562127997198
Q gi|255764495|r 67 HVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNN 146 (309)
Q Consensus 67 ~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (309)
.|+++=|++... ..-.+.|..+.+.+.+..-+..|-+|+-....+
T Consensus 5 HILVAVdLs~eS-~~Li~KAv~lAk~~~AklSlIhvd~~~~elY~g---------------------------------- 49 (142)
T PRK09982 5 HIGVAISGNEED-ALLVNKALELARHNDAHLTLIHIDDGLSELYPG---------------------------------- 49 (142)
T ss_pred EEEEEEECCHHH-HHHHHHHHHHHHHCCCEEEEEEEECCCHHHCCH----------------------------------
T ss_conf 799998558416-999999999987609839999990884665110----------------------------------
Q ss_pred EEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
Q ss_conf 79998328888887554760089999999999852433697089998376888764311012797899999987498199
Q gi|255764495|r 147 IALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLI 226 (309)
Q Consensus 147 ~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lv 226 (309)
+..+.+. .....+.++...+|++..+++..+=.. .++.+.- + .+.+.+.++++++|++
T Consensus 50 l~~~~~~--------~~~~~~~e~~~~~L~~L~~~~~YPI~~-~~v~~Gd-----------l--~~~L~~~v~~~~iDLl 107 (142)
T PRK09982 50 IYFPATE--------DILQLLKNKSDNKLYKLTKNIQWPKTK-LRIERGE-----------M--PETLLEIMQKEQCDLL 107 (142)
T ss_pred HCCCCHH--------HHHHHHHHHHHHHHHHHHHHCCCCCEE-EEEEECC-----------H--HHHHHHHHHHHCCCEE
T ss_conf 2053125--------688999999999999999847998247-8998448-----------8--9999999998499889
Q ss_pred EECCCCC
Q ss_conf 9987675
Q gi|255764495|r 227 LHGHTHL 233 (309)
Q Consensus 227 l~GH~H~ 233 (309)
+|||-|.
T Consensus 108 IcGHHh~ 114 (142)
T PRK09982 108 VCGHHHS 114 (142)
T ss_pred EECCCHH
T ss_conf 9656286
No 63
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=91.43 E-value=0.2 Score=28.18 Aligned_cols=54 Identities=31% Similarity=0.323 Sum_probs=36.4
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 99999996269979999374444899899999999998618997189994588422220
Q gi|255764495|r 54 NLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISG 112 (309)
Q Consensus 54 ~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~ 112 (309)
-++...++..-.|.+-+.|||.++|+-.+ .+++.|..-..+-+--||||..+.+
T Consensus 180 ~ala~~iqrLvVDhLHiVGDIyDRGP~pd-----~Imd~L~~yhsvDiQWGNHDilWmg 233 (648)
T COG3855 180 IALAYLIQRLVVDHLHIVGDIYDRGPYPD-----KIMDTLINYHSVDIQWGNHDILWMG 233 (648)
T ss_pred HHHHHHHHHHHHHHEEEECCCCCCCCCCH-----HHHHHHHHCCCCCCCCCCCCEEEEE
T ss_conf 99999999983534034010124799830-----7999986225534211676547751
No 64
>KOG0371 consensus
Probab=91.02 E-value=0.84 Score=24.11 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=34.8
Q ss_pred HHHHCCCC-EEEECCCCCCCCCHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCCCHHHHH
Q ss_conf 99626997-9999374444899899999999998618--99718999458842222035676
Q gi|255764495|r 59 DILLHNVD-HVSITGDIVNFTCNREIFTSTHWLRSIG--NPHDISIVPGNHDAYISGAKEKS 117 (309)
Q Consensus 59 ~i~~~~pD-~vvitGDl~~~~~~~~~~~~~~~~~~l~--~~~~v~~v~GNHD~~~~~~~~~~ 117 (309)
.|....|| --++.||.++.|.... .....+-.+. -|..|.++.|||+...-.....+
T Consensus 80 kiGG~~pdtnylfmGDyvdrGy~Sv--etVS~lva~Kvry~~rvtilrGNHEsrqitqvygf 139 (319)
T KOG0371 80 KIGGLAPDTNYLFMGDYVDRGYYSV--ETVSLLVALKVRYPDRVTILRGNHESRQITQVYGF 139 (319)
T ss_pred HCCCCCCCCCEEEEEEECCCCCCHH--HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 7058887761365541102464047--88999987431566406882286188889999831
No 65
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=89.95 E-value=1.4 Score=22.71 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=47.0
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHH-----HHCCCCEEEECCCCCCCC----CH-
Q ss_conf 88994111427885410002221000121000001233089999999999-----626997999937444489----98-
Q gi|255764495|r 11 VLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDI-----LLHNVDHVSITGDIVNFT----CN- 80 (309)
Q Consensus 11 ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i-----~~~~pD~vvitGDl~~~~----~~- 80 (309)
-++.+||.+|..+ ...++|+.+...- ...-|-+.|+.||++..+ ..
T Consensus 29 ~~VilsDVwLD~p------------------------~t~E~L~kMf~~y~~~~~~d~~P~~fVlmGnF~S~pf~~~~~~ 84 (307)
T PTZ00235 29 NWIIMHDVYLDSP------------------------YTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNF 84 (307)
T ss_pred CEEEEEEEECCCC------------------------CHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCH
T ss_conf 5899975422780------------------------0799999999875125765569778999635424776788624
Q ss_pred -----HHHHHHHHHH----HHHCCCCCEEEEECCCCCC
Q ss_conf -----9999999999----8618997189994588422
Q gi|255764495|r 81 -----REIFTSTHWL----RSIGNPHDISIVPGNHDAY 109 (309)
Q Consensus 81 -----~~~~~~~~~~----~~l~~~~~v~~v~GNHD~~ 109 (309)
+-|+.+..++ ..+...+.+.+|||--|..
T Consensus 85 ~~~Y~~GF~~La~lLiSkFp~ile~s~fVFVPGp~DP~ 122 (307)
T PTZ00235 85 HKVYIKGFEKLSVMLISKFKLILEHCYLIFIPGINDPC 122 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCC
T ss_conf 89999889999999986635767410499955999865
No 66
>PRK04286 hypothetical protein; Provisional
Probab=89.21 E-value=1.2 Score=23.08 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=32.7
Q ss_pred CEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCC-CC-CCHHHHHHHHHHCCCEEEEECCCCCCE
Q ss_conf 600899999999998524336970899983768887643110-12-797899999987498199998767532
Q gi|255764495|r 165 GYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYN-RM-FGIQRFQKMIWHEGADLILHGHTHLNS 235 (309)
Q Consensus 165 g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~-~~-~~~~~l~~~l~~~~v~lvl~GH~H~~~ 235 (309)
|-+.++++.|+.+. .+.+++.-.||..-...... .+ ...+.+.+++...+-.+|+-=|.=+..
T Consensus 188 G~~~~e~v~~il~~--------~P~ivii~GPPtYL~gr~~~~~le~~i~Nl~~ii~~~~~~lIlDHHllRD~ 252 (294)
T PRK04286 188 GPLNDEAVEFILEK--------KPTVVIIGGPPTYLLYRVSGEDLEKGIENLERIILLRPKTLILDHHLLRDI 252 (294)
T ss_pred CCCCHHHHHHHHHC--------CCCEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEECHHHCCC
T ss_conf 76878999999863--------999899679845652204676699999999999981898799814133052
No 67
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183 Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) . For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=87.63 E-value=2 Score=21.69 Aligned_cols=62 Identities=21% Similarity=0.147 Sum_probs=45.8
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCC-EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 0001233089999999999626997-99993744448998999999999986189971899945884
Q gi|255764495|r 42 FNRKKYFSKEVANLLINDILLHNVD-HVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHD 107 (309)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~i~~~~pD-~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD 107 (309)
++|-+...++-++++++.+++++-| +|||.||=+|. .-..+.+.+.+-..+++|.-||===|
T Consensus 146 SGRtKI~T~Eq~~~al~~~k~l~LdgLVIIGGDdSNT----nAA~LAEyF~~~~~~t~viGVPKTID 208 (566)
T TIGR02477 146 SGRTKIETEEQFAKALETAKKLKLDGLVIIGGDDSNT----NAALLAEYFAKKGLKTQVIGVPKTID 208 (566)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHH----HHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 6854556888999999998760896489974798679----99999999997389922786402547
No 68
>KOG3818 consensus
Probab=87.48 E-value=2 Score=21.63 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=46.8
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC----
Q ss_conf 3255327889941114278854100022210001210000012330899999999996269979999374444899----
Q gi|255764495|r 4 RYTTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTC---- 79 (309)
Q Consensus 4 ~~~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~---- 79 (309)
.++..| |+.|||+||... .-...|..+++-.+...|-+||..|-.+....
T Consensus 279 ~~~d~~--fVfLSdV~LD~~------------------------~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~s 332 (525)
T KOG3818 279 ENTDTS--FVFLSDVFLDDK------------------------KVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQTSS 332 (525)
T ss_pred HCCCCE--EEEEEHHCCCCH------------------------HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCH
T ss_conf 474744--999751103659------------------------999999999831568998389995465566556536
Q ss_pred HHHHHHHHHHHHHHC-------CCCCEEEEECCCCCCCCC
Q ss_conf 899999999998618-------997189994588422220
Q gi|255764495|r 80 NREIFTSTHWLRSIG-------NPHDISIVPGNHDAYISG 112 (309)
Q Consensus 80 ~~~~~~~~~~~~~l~-------~~~~v~~v~GNHD~~~~~ 112 (309)
-..+.....++.... ....+.+|||-.|.+...
T Consensus 333 ~~~~k~~f~~LA~~l~~~~~~~ekT~fIFVPGP~Dp~~~~ 372 (525)
T KOG3818 333 SDQLKDGFRWLAAQLTCFRKDYEKTQFIFVPGPNDPWVDN 372 (525)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 8999988999986423234531012389945998877676
No 69
>TIGR00486 TIGR00486 conserved hypothetical protein TIGR00486; InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown ..
Probab=87.46 E-value=1.7 Score=22.17 Aligned_cols=64 Identities=13% Similarity=0.008 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEE-ECCCCCCCCCHHH-HHHHHHHHHHH-CCCCCEEEEECCCCCCCC
Q ss_conf 3089999999999626997999-9374444899899-99999999861-899718999458842222
Q gi|255764495|r 48 FSKEVANLLINDILLHNVDHVS-ITGDIVNFTCNRE-IFTSTHWLRSI-GNPHDISIVPGNHDAYIS 111 (309)
Q Consensus 48 ~~~~~l~~~~~~i~~~~pD~vv-itGDl~~~~~~~~-~~~~~~~~~~l-~~~~~v~~v~GNHD~~~~ 111 (309)
...+..+.+++.+.+.+.|+|| +=|=+...-.+-. -....+.++.| ..++.+|.+-=|=|....
T Consensus 52 ~~vD~s~~~~~~A~~~~~d~i~~HHp~~~~~~~~~~~~~~~~~~~k~Ll~~~i~lY~~HtnlD~~~~ 118 (325)
T TIGR00486 52 VAVDASESVAKEAKEKNADLIITHHPLIFKPLKRLIRGIKPKRLLKILLENDISLYSAHTNLDAHRG 118 (325)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCHHHCC
T ss_conf 6777899999999853797999807864287222366641036788988679613410460023304
No 70
>KOG0372 consensus
Probab=84.77 E-value=2.3 Score=21.25 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=28.9
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 79999374444899899999999998618997189994588422220
Q gi|255764495|r 66 DHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISG 112 (309)
Q Consensus 66 D~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~ 112 (309)
.--++.||.+++|.-.--....-+.-++.-|..+..+.|||+...-.
T Consensus 71 t~YlFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqit 117 (303)
T KOG0372 71 TNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQIT 117 (303)
T ss_pred CCEEEECCHHCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
T ss_conf 86676412010460169999999999602864057751473221235
No 71
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=84.57 E-value=2.7 Score=20.74 Aligned_cols=98 Identities=16% Similarity=0.073 Sum_probs=43.0
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHH--HHHHHHHHHHCCCCEEEEC-C--CCCCCC-CHHHHH
Q ss_conf 889941114278854100022210001210000012330899--9999999962699799993-7--444489-989999
Q gi|255764495|r 11 VLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEV--ANLLINDILLHNVDHVSIT-G--DIVNFT-CNREIF 84 (309)
Q Consensus 11 ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~i~~~~pD~vvit-G--Dl~~~~-~~~~~~ 84 (309)
||+|+.|-|+...--...+.+.--.-+-|.-.+...-..... .+.+.+.++..+||+||+. | |..... ..++|.
T Consensus 1 ~i~~~gdS~~~~d~~~~~~r~~~GV~~~~~gi~GA~~~~~~~~~~~~~~~ql~~~~PDLVil~~GtNda~~~~~~~~~~~ 80 (189)
T cd01825 1 RIAQLGDSHIAGDFFTDVLRGLLGVIYDNLGVNGASASLLLKWDAEFLQAQLAALPPDLVILSYGTNEAFNKQLNASEYR 80 (189)
T ss_pred CEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf 94463476547745345425988879961676862324553368899999997359998999905642356899999999
Q ss_pred -HHHHHHHHH---CCCCCEEEEECCCCCC
Q ss_conf -999999861---8997189994588422
Q gi|255764495|r 85 -TSTHWLRSI---GNPHDISIVPGNHDAY 109 (309)
Q Consensus 85 -~~~~~~~~l---~~~~~v~~v~GNHD~~ 109 (309)
...++++.+ ....++ .+.|.-|.+
T Consensus 81 ~~~~~~I~~ir~~~P~a~i-ll~~p~d~~ 108 (189)
T cd01825 81 QQLREFIKRLRQILPNASI-LLVGPPDSL 108 (189)
T ss_pred HHHHHHHHHHHHHCCCCEE-EEECCCCHH
T ss_conf 9999999999975899809-998288276
No 72
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=84.51 E-value=2.5 Score=20.96 Aligned_cols=92 Identities=17% Similarity=0.199 Sum_probs=45.4
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCC---------EEEEECCCCCCEEEEEECC
Q ss_conf 9999999852433697089998376888764311012797899999987498---------1999987675324787169
Q gi|255764495|r 172 AHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGA---------DLILHGHTHLNSLHWIKNE 242 (309)
Q Consensus 172 ~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v---------~lvl~GH~H~~~~~~~~~~ 242 (309)
++.|++.+...+ .+..|+.-=|+|...- |.. ..-..+.++.++++| |+++.||.|.+....-...
T Consensus 147 ~~~LE~~~~~~~--vkl~iLCnPHNP~Grv--wt~--eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~ 220 (388)
T COG1168 147 FDALEKAFVDER--VKLFILCNPHNPTGRV--WTK--EELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERF 220 (388)
T ss_pred HHHHHHHHHCCC--CCEEEEECCCCCCCCC--CCH--HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHCCHHH
T ss_conf 999999984377--6089993799999864--369--9999999999983998983033566121698766543269554
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCEEEEE
Q ss_conf 98689999576235778888778548999
Q gi|255764495|r 243 KKLIPVVGIASASQKVHSNKPQASYNLFY 271 (309)
Q Consensus 243 ~~~~~~~~~~s~~~~~~~~~~~~~y~li~ 271 (309)
.-..+.+.|+|.++.-.+-..+|-+|.
T Consensus 221 --a~~~it~~saSKtFNlaGL~~a~~Ii~ 247 (388)
T COG1168 221 --ADNSITLTSASKTFNLAGLKCAYIIIS 247 (388)
T ss_pred --HCCEEEEEECCCCCCCHHHHHEEEEEC
T ss_conf --323599840522156044442147834
No 73
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=77.21 E-value=4.9 Score=19.05 Aligned_cols=128 Identities=10% Similarity=0.040 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999962699799993744448998999999999986189971899945884222203567664324543134444
Q gi|255764495|r 52 VANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTC 131 (309)
Q Consensus 52 ~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~ 131 (309)
-++.+++.+.+.+...+++.|- .++++..+.++.+.. ..++...|=|=.+..............+.....
T Consensus 16 d~~~vi~~a~~~gv~~ii~~~~-----~~~~~~~~~~la~~~---~~i~~~~GiHP~~~~~~~~~~~~~l~~~~~~~~-- 85 (251)
T cd01310 16 DRDDVLARAREAGVIKIIVVGT-----DLKSSKRALELAKKY---DNVYAAVGLHPHDADEHVDEDLDLLELLAANPK-- 85 (251)
T ss_pred CHHHHHHHHHHCCCCEEEEECC-----CHHHHHHHHHHHHHC---CCEEEEECCCHHHHHHCCHHHHHHHHHHHCCCC--
T ss_conf 9999999999869988999689-----999999999999759---986898236837651235779999999972899--
Q ss_pred CCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCH
Q ss_conf 45556212799719879998328888887554760089999999999852433697089998376888764311012797
Q gi|255764495|r 132 STGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGI 211 (309)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~ 211 (309)
+ -.+.-+|||-.... ...+.|.+.++++|+-+.+-+.+ ++.|.. .-.
T Consensus 86 ---------~---vaIGEiGLD~~~~~-------~~~~~Q~~~F~~ql~lA~~~~lP--v~iH~R------------~A~ 132 (251)
T cd01310 86 ---------V---VAIGEIGLDYYRDK-------SPREVQKEVFRAQLELAKELNLP--VVIHSR------------DAH 132 (251)
T ss_pred ---------E---EEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHCCC--EEEEEC------------CCH
T ss_conf ---------0---69985014888889-------98999999999999999875788--489864------------547
Q ss_pred HHHHHHHHHCC
Q ss_conf 89999998749
Q gi|255764495|r 212 QRFQKMIWHEG 222 (309)
Q Consensus 212 ~~l~~~l~~~~ 222 (309)
+++.++|++++
T Consensus 133 ~~~l~iL~~~~ 143 (251)
T cd01310 133 EDVLEILKEYG 143 (251)
T ss_pred HHHHHHHHHCC
T ss_conf 99999999708
No 74
>KOG4184 consensus
Probab=76.55 E-value=4.2 Score=19.52 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCC-CCCCCHH-HHHHHHHHHHHHC
Q ss_conf 23308999999999962699799993744-4489989-9999999998618
Q gi|255764495|r 46 KYFSKEVANLLINDILLHNVDHVSITGDI-VNFTCNR-EIFTSTHWLRSIG 94 (309)
Q Consensus 46 ~~~~~~~l~~~~~~i~~~~pD~vvitGDl-~~~~~~~-~~~~~~~~~~~l~ 94 (309)
..-....+|.+.+.++.-+||+||++|=- .+.-+.+ .-+..++..+.|.
T Consensus 220 ~n~~m~~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~ 270 (478)
T KOG4184 220 NNPHMRAVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLS 270 (478)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 980798999999999973997699964368765418989999999999875
No 75
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase; InterPro: IPR006323 These sequences represent an enzyme that catalyzes the cleavage of the carbon phosphorous bond of a phosphonate. The mechanism depends on the substrate having a carbonyl one carbon away from the cleavage position. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base . The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilised by microorganisms as a chemical warfare agent..
Probab=74.75 E-value=5.7 Score=18.63 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHC--CCCEEEECCCCCCCCCHHHHHHHHHHHH
Q ss_conf 3089999999999626--9979999374444899899999999998
Q gi|255764495|r 48 FSKEVANLLINDILLH--NVDHVSITGDIVNFTCNREIFTSTHWLR 91 (309)
Q Consensus 48 ~~~~~l~~~~~~i~~~--~pD~vvitGDl~~~~~~~~~~~~~~~~~ 91 (309)
++....+.+++.+..+ +||+||-|=|+.+.|+|.-+..++..++
T Consensus 122 Ypr~vMd~v~~~Aa~~GY~pD~vVatDdvpq~GRP~P~~alkNvie 167 (199)
T TIGR01422 122 YPREVMDIVVAEAALQGYKPDFVVATDDVPQAGRPYPFMALKNVIE 167 (199)
T ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 7578999999999747897664246622467889747899998987
No 76
>TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis ..
Probab=73.76 E-value=3 Score=20.50 Aligned_cols=15 Identities=7% Similarity=0.078 Sum_probs=9.1
Q ss_pred EEEEEECCCCCEEEE
Q ss_conf 999951377611575
Q gi|255764495|r 282 EGKRYTLSPDSLSIQ 296 (309)
Q Consensus 282 ~~~r~~~~~d~~~~~ 296 (309)
-..|.++++-...|.
T Consensus 248 i~~k~a~T~f~e~V~ 262 (292)
T TIGR02855 248 IVEKVAFTPFMERVN 262 (292)
T ss_pred EEEEEEECCCCCEEE
T ss_conf 011002325566453
No 77
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=72.99 E-value=6.3 Score=18.35 Aligned_cols=76 Identities=16% Similarity=0.101 Sum_probs=46.5
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 99999998524336970899983768887643110127978999999874981999987675324787169986899995
Q gi|255764495|r 172 AHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGI 251 (309)
Q Consensus 172 ~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~ 251 (309)
+......+..++.....+|+++|+.-...... .....++...+...|++++..+|-|..+-..+.+ ++....++-
T Consensus 210 ~~~~~~~v~~a~k~adlviv~~HwG~ey~~~p----~~~q~~~a~~lidAGa~iIvGhhpHvlqpiE~~~-~~k~I~YsL 284 (372)
T COG2843 210 LERVLAAVLAAKKGADLVIVQPHWGVEYAYEP----AAGQRALARRLIDAGADIIVGHHPHVLQPIEIYI-QGKPILYSL 284 (372)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC----CHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEC-CCCEEEEEC
T ss_conf 11569999853226987999646654226787----3789999999886475848548987676658862-894799831
Q ss_pred C
Q ss_conf 7
Q gi|255764495|r 252 A 252 (309)
Q Consensus 252 ~ 252 (309)
+
T Consensus 285 G 285 (372)
T COG2843 285 G 285 (372)
T ss_pred C
T ss_conf 7
No 78
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase; InterPro: IPR004816 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A reductase, HMG-CoA reductase. There are two distinct classes of hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase enzymes: class I consists of eukaryotic and most archaeal enzymes (1.1.1.34 from EC), while class II consists of prokaryotic enzymes (1.1.1.88 from EC) , . Class I HMG-CoA reductases catalyse the NADP-dependent synthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA). In vertebrates, membrane-bound HMG-CoA reductase is the rate-limiting enzyme in the biosynthesis of cholesterol and other isoprenoids. In plants, mevalonate is the precursor of all isoprenoid compounds . The reduction of HMG-CoA to mevalonate is regulated by feedback inhibition by sterols and non-sterol metabolites derived from mevalonate, including cholesterol. In archaea, HMG-CoA reductase is a cytoplasmic enzyme involved in the biosynthesis of the isoprenoids side chains of lipids . Class I HMG-CoA reductases consist of an N-terminal membrane domain (lacking in archaeal enzymes), and a C-terminal catalytic region. The catalytic region can be subdivided into three domains: an N-domain (N-terminal), a large L-domain, and a small S-domain (inserted within the L-domain). The L-domain binds the substrate, while the S-domain binds NADP. Class II HMG-CoA reductases catalyse the reverse reaction of class I enzymes, namely the NAD-dependent synthesis of HMG-CoA from mevalonate and CoA . Some bacteria, such as Pseudomonas mevalonii, can use mevalonate as the sole carbon source. Class II enzymes lack a membrane domain. Their catalytic region is structurally related to that of class I enzymes, but it consists of only two domains: a large L-domain and a small S-domain (inserted within the L-domain). As with class I enzymes, the L-domain binds substrate, but the S-domain binds NAD (instead of NADP in class I). This entry represents Metazoan class I HMG-CoA reductases, which are membrane-bound glycoproteins that remains in the endoplasmic reticulum after synthesis and glycosylation .; GO: 0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity, 0050661 NADP binding, 0008299 isoprenoid biosynthetic process, 0005789 endoplasmic reticulum membrane.
Probab=72.69 E-value=4.4 Score=19.40 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=43.1
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC-CCCHH
Q ss_conf 43255327889941114278854100022210001210000012330899999999996269979999374444-89989
Q gi|255764495|r 3 KRYTTIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVN-FTCNR 81 (309)
Q Consensus 3 ~~~~~~m~ri~hlSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~-~~~~~ 81 (309)
++|+++. ||+-|+++|+....+. + =.-|+-+|||=-= +.--.
T Consensus 692 ~~FDSTS-RFArL~~~h~~~aGR~--L----------------------------------yiRF~a~TGDaMGMNMiSK 734 (988)
T TIGR00920 692 DAFDSTS-RFARLKKIHIAVAGRN--L----------------------------------YIRFQAKTGDAMGMNMISK 734 (988)
T ss_pred HCCCCCC-HHHHHHHHHHEECCCC--E----------------------------------EEEEEECCCCCCCCCHHHH
T ss_conf 2157643-1355522100002764--0----------------------------------3654530478666310228
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 999999999861899718999458842
Q gi|255764495|r 82 EIFTSTHWLRSIGNPHDISIVPGNHDA 108 (309)
Q Consensus 82 ~~~~~~~~~~~l~~~~~v~~v~GNHD~ 108 (309)
-.+.+...++...+...|..+-||-=.
T Consensus 735 gte~AL~~lq~~FPdm~IlslSGNyCT 761 (988)
T TIGR00920 735 GTEQALAELQEVFPDMEILSLSGNYCT 761 (988)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 899999998754888089640366156
No 79
>TIGR00010 TIGR00010 hydrolase, TatD family; InterPro: IPR015991 Escherichia coli TatD (synonym MttC) has been shown experimentally to be a DNase . On the basis of operon structure, it was originally thought to be involved in the Sec-independent export of protein precursors bearing twin arginine signal peptides by the Tat system . This alternative membrane targeting and translocation system (Mtt), also called twin arginine translocase (Tat) (MttA1A2BC or TatABCD), has been shown to transport fully folded proteins to, or across, the membrane , . However, it was later determined that TatD is not required for this translocation process , . Furthermore, it was noted that no exact correlation exists between the ability of an organism to synthesise a TatD-like protein and whether that organism has a Tat protein transport pathway . Also, with the exception of Escherichia coli , the genetic linkage between TatD and other Tat genes (operon structure) is not maintained. Members of this group may be distantly related to a large 3D fold-based domain superfamily of metalloenzymes . The description of this fold superfamily was based on an analysis of conservation patterns in three dimensions, and the discovery that the same active-site architecture occurs in a large set of enzymes involved primarily in nucleotide metabolism. The group is thought to include urease, dihydroorotase, allantoinase, hydantoinase, AMP-, adenine- and cytosine- deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolase, formylmethanofuran dehydrogenase, and other enzymes ..
Probab=72.57 E-value=6.4 Score=18.29 Aligned_cols=137 Identities=11% Similarity=0.087 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999626997999937444489989999-9999998618997189994588422220356766432454313444
Q gi|255764495|r 52 VANLLINDILLHNVDHVSITGDIVNFTCNREIF-TSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTT 130 (309)
Q Consensus 52 ~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~-~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~ 130 (309)
-++.+++.+++.+...||..|+= ..++. .+.++.+.-. ...||+..|=|=.-.............+.......
T Consensus 19 d~~~v~~ra~~~~v~~~v~vg~~-----l~~~~W~~~~l~~~~~-g~~v~~~~G~HP~d~~~~~~~~~~~l~~l~~~~~~ 92 (269)
T TIGR00010 19 DVEEVIERAKAEGVTAVVDVGTD-----LEDLNWRALELAEKYP-GDNVYAAVGVHPLDVEDDTKEDIKELEKLAKNAHP 92 (269)
T ss_pred CHHHHHHHHHHCCCEEEEEECCC-----CCCCHHHHHHHHHHCC-CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 58999999997499299973467-----0020699999998479-97699982268722204208999999999985069
Q ss_pred CCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEEC--HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 44555621279971987999832888888755476008--9999999999852433697089998376888764311012
Q gi|255764495|r 131 CSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFG--QEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRM 208 (309)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~--~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~ 208 (309)
.+.- +.=+|||-.... ... ..|.+-++.+|+-+..-+.+ ++.|-.
T Consensus 93 ---------~v~A---iGE~GLDY~~~~-------~~~e~~~Q~e~F~~q~~lA~~~~~P--~iiH~R------------ 139 (269)
T TIGR00010 93 ---------KVVA---IGETGLDYYKAD-------EKKERRRQKEVFRAQLQLAEELNLP--VIIHAR------------ 139 (269)
T ss_pred ---------CEEE---EEEECCCCCCCC-------CCCCHHHHHHHHHHHHHHHHHCCCC--EEEECC------------
T ss_conf ---------5479---851044043068-------7521789999999999999971996--899788------------
Q ss_pred CCH-HHHHHHHHH------CCCEEEEE
Q ss_conf 797-899999987------49819999
Q gi|255764495|r 209 FGI-QRFQKMIWH------EGADLILH 228 (309)
Q Consensus 209 ~~~-~~l~~~l~~------~~v~lvl~ 228 (309)
++ +++.++|.+ ..+..|||
T Consensus 140 -dA~~d~~~iL~~~y~~~~~~~~g~~H 165 (269)
T TIGR00010 140 -DAEEDVLDILREYYAEKAPKVGGVLH 165 (269)
T ss_pred -CHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf -45799999999998427877875798
No 80
>KOG0373 consensus
Probab=69.99 E-value=7.3 Score=17.92 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=28.4
Q ss_pred CCC-EEEECCCCCCCCC--HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 997-9999374444899--899999999998618997189994588422220
Q gi|255764495|r 64 NVD-HVSITGDIVNFTC--NREIFTSTHWLRSIGNPHDISIVPGNHDAYISG 112 (309)
Q Consensus 64 ~pD-~vvitGDl~~~~~--~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~ 112 (309)
-|| --++.||.+++|- .+.+..+.-+ .+.-|..+..+.|||+...-.
T Consensus 71 vP~tnYiFmGDfVDRGyySLEtfT~l~~L--karyP~~ITLlRGNHEsRqit 120 (306)
T KOG0373 71 VPDTNYIFMGDFVDRGYYSLETFTLLLLL--KARYPAKITLLRGNHESRQIT 120 (306)
T ss_pred CCCCCEEEECCCCCCCCCCHHHHHHHHHH--HHCCCCEEEEEECCCHHHHHH
T ss_conf 99864687412213562008999999999--703886057861563133135
No 81
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=69.65 E-value=6.1 Score=18.46 Aligned_cols=20 Identities=25% Similarity=0.164 Sum_probs=11.9
Q ss_pred HHHHHHHCCC-CEEEECCCCC
Q ss_conf 9999962699-7999937444
Q gi|255764495|r 56 LINDILLHNV-DHVSITGDIV 75 (309)
Q Consensus 56 ~~~~i~~~~p-D~vvitGDl~ 75 (309)
|++.|++.+. -++|.++++.
T Consensus 124 Lv~~iR~~G~m~g~I~~~~~~ 144 (383)
T TIGR01368 124 LVKKIREKGTMKGVISTEDSN 144 (383)
T ss_pred HHHHHHHCCCEEEEEEECCCC
T ss_conf 999986358547899606767
No 82
>PRK10116 universal stress protein UspC; Provisional
Probab=68.23 E-value=8 Score=17.68 Aligned_cols=37 Identities=3% Similarity=0.076 Sum_probs=23.0
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 99993744448998999999999986189971899945
Q gi|255764495|r 67 HVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPG 104 (309)
Q Consensus 67 ~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~G 104 (309)
-|+++=|++.. +..-.+.|.++-+......-+..|..
T Consensus 5 hILVAvDlS~~-S~~~i~kA~~lA~~~~AklslihV~~ 41 (142)
T PRK10116 5 NILVAVAVTPE-SQQLLAKAVSIARPVNGKISLITLAS 41 (142)
T ss_pred EEEEEECCCHH-HHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 89999418850-69999999999998199899999935
No 83
>PRK05421 hypothetical protein; Provisional
Probab=67.62 E-value=8.2 Score=17.60 Aligned_cols=53 Identities=8% Similarity=0.038 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9999999999852433697089998376888764311012797899999987498199998767
Q gi|255764495|r 169 QEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTH 232 (309)
Q Consensus 169 ~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H 232 (309)
.+|++.+.+.++..+ .++|+..-.+ ++...+ ...+.+.+.+.+..-+..--.|
T Consensus 158 ~~QL~~l~~~i~~H~---GPvI~AGDFN-----tWs~~R---~~~l~~~~~~~gL~ev~f~~d~ 210 (254)
T PRK05421 158 SKQLEPIGDQIAHHS---GPIILAGDFN-----TWSRKR---MNALKRFARELGLKEVRFTDDQ 210 (254)
T ss_pred HHHHHHHHHHHHHCC---CCEEEECCCC-----CCCHHH---HHHHHHHHHHCCCCEEECCCCC
T ss_conf 999999999998489---9879844533-----013999---9999999997698087537677
No 84
>TIGR02961 allantoicase allantoicase; InterPro: IPR005164 Allantoicase (also known as allantoate amidinohydrolase) is involved in purine degradation, facilitating the utilization of purines as secondary nitrogen sources under nitrogen-limiting conditions. While purine degradation converges to uric acid in all vertebrates, its further degradation varies from species to species. Uric acid is excreted by birds, reptiles, and some mammals that do not have a functional uricase gene, whereas other mammals produce allantoin. Amphibians and microorganisms produce ammonia and carbon dioxide using the uricolytic pathway. Allantoicase performs the second step in this pathway catalyzing the conversion of allantoate into ureidoglycolate and urea. allantoate + H(2)0 = (S)-ureidoglycolate + urea The structure of allantoicase is best described as being composed of two repeats (the allantoicase repeats: AR1 and AR2), which are connected by a flexible linker. The crystal structure, resolved at 2.4A resolution, reveals that AR1 has a very similar fold to AR2, both repeats being jelly-roll motifs, composed of four-stranded and five-stranded antiparallel beta-sheets . Each jelly-roll motif has two conserved surface patches that probably constitute the active site . ; GO: 0004037 allantoicase activity.
Probab=65.76 E-value=6.3 Score=18.33 Aligned_cols=16 Identities=13% Similarity=-0.172 Sum_probs=7.8
Q ss_pred EECCCCEEEEEEEEEE
Q ss_conf 9538983899999951
Q gi|255764495|r 272 IEKKNEYWTLEGKRYT 287 (309)
Q Consensus 272 i~~~~~~~~v~~~r~~ 287 (309)
|.|||+-.|++++-..
T Consensus 178 iyPDGGiARLRVYG~~ 193 (376)
T TIGR02961 178 IYPDGGIARLRVYGEV 193 (376)
T ss_pred ECCCCCEEEEEEEEEE
T ss_conf 4599846878984121
No 85
>TIGR00504 pyro_pdase pyrrolidone-carboxylate peptidase; InterPro: IPR000816 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad . This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins , . PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis . The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies , .; GO: 0004219 pyroglutamyl-peptidase I activity, 0006508 proteolysis.
Probab=65.45 E-value=7.2 Score=17.96 Aligned_cols=29 Identities=24% Similarity=-0.026 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 33089999999999626997999937444
Q gi|255764495|r 47 YFSKEVANLLINDILLHNVDHVSITGDIV 75 (309)
Q Consensus 47 ~~~~~~l~~~~~~i~~~~pD~vvitGDl~ 75 (309)
..+...+|.+.+.|.+.+||+||.+|--=
T Consensus 43 ~~F~~A~~~l~~~i~~~~P~~vI~~G~~P 71 (220)
T TIGR00504 43 VAFKEALEALRQAIDEVEPDIVIALGLAP 71 (220)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 25799999999999850954488515767
No 86
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=61.22 E-value=11 Score=16.83 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=36.3
Q ss_pred CEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC-C-CCC-CCHHHHHHHHHHCCCEEEEECCCCCCE
Q ss_conf 6008999999999985243369708999837688876431-1-012-797899999987498199998767532
Q gi|255764495|r 165 GYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSL-Y-NRM-FGIQRFQKMIWHEGADLILHGHTHLNS 235 (309)
Q Consensus 165 g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~-~-~~~-~~~~~l~~~l~~~~v~lvl~GH~H~~~ 235 (309)
|-+.+++++|+.+. .+.|+++-.||....... . +.+ .....+..++++.+..+|+-=|.=+.-
T Consensus 187 Gp~~~~~l~~i~e~--------~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~lViDHHllRD~ 252 (304)
T COG2248 187 GPINDEALEFILEK--------RPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATLVIDHHLLRDK 252 (304)
T ss_pred CCCCCHHHHHHHHC--------CCCEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHCCC
T ss_conf 88860888999851--------8988996698266766550767799999899999970766499852023177
No 87
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=60.75 E-value=11 Score=16.78 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=29.6
Q ss_pred HHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 999998524336970899983768887643110127978999999874981999987675
Q gi|255764495|r 174 ATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHL 233 (309)
Q Consensus 174 ~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~ 233 (309)
.+++.+. .|...+++..++.+....... -+..+.+++++.+.++||+||+-.
T Consensus 51 ~l~~~~a----~GaD~v~~v~~~~~~~~~~~~----~a~~la~~i~~~~~dlVl~g~~s~ 102 (181)
T cd01985 51 ALREALA----MGADKVLLVEDPALAGYDPEA----TAKALAALIKKEKPDLILAGATSI 102 (181)
T ss_pred HHHHHHH----CCCCEEEEECCCCCCCCCHHH----HHHHHHHHHHHCCCCEEEECCCHH
T ss_conf 9999977----289789998167445768899----999999999860998999604102
No 88
>KOG0376 consensus
Probab=59.64 E-value=11 Score=16.65 Aligned_cols=189 Identities=12% Similarity=0.067 Sum_probs=82.7
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHH--------HHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999937444489989999999999861899718999458842222035--------676643245431344444555621
Q gi|255764495|r 67 HVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAK--------EKSLHAWKDYITSDTTCSTGKKLF 138 (309)
Q Consensus 67 ~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 138 (309)
--+..||+++.++...-..+..+...+..|-.+|...|||+....... .++.......+. ..+...+.
T Consensus 244 ~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~~~~~f~----~~f~~LPl 319 (476)
T KOG0376 244 PYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEEMFNLFS----EVFIWLPL 319 (476)
T ss_pred CCCCCCCEEEECCCCEEEEEEEHHHCCCCCCCEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH----HHHCCCCC
T ss_conf 54456750121011000122200002247763641247742067999858876402446788777666----65301562
Q ss_pred EEEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC----CCC----CCCC
Q ss_conf 27997198799983288888875547600899999999998524336970899983768887643----110----1279
Q gi|255764495|r 139 PYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSS----LYN----RMFG 210 (309)
Q Consensus 139 ~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~----~~~----~~~~ 210 (309)
+. .+...+.++ . ... .......-..+..+.+. ++.++ -..+++-+...+... .+. -..+
T Consensus 320 ~~-~i~~~~~~~--h---ggl--f~~~~v~l~d~r~i~r~-~~~~~----~~~~~~~lws~pq~~~g~s~S~r~~g~~fG 386 (476)
T KOG0376 320 AH-LINNKVLVM--H---GGL--FSPDGVTLEDFRNIDRF-EQPPE----EGLMCELLWSDPQPANGRSPSKRGVGLQFG 386 (476)
T ss_pred HH-HHCCCEEEE--E---CCC--CCCCCCCHHHHHHHHHC-CCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 53-306716888--4---675--78888528998743301-28952----122001366797645688866457424337
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 7899999987498199998767532478716998689999576235778888778548999953898
Q gi|255764495|r 211 IQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKNE 277 (309)
Q Consensus 211 ~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~~ 277 (309)
.+.-...+...+.+.++-+|--...-..++-.+.-+.++++|.-+.+.. +-+..|.++++..
T Consensus 387 ~d~t~~f~~~n~l~~i~rshe~~d~gy~~eh~g~l~tvfsapnycd~~~-----n~ga~i~~~~~~~ 448 (476)
T KOG0376 387 PDVTERFLQDNNLDKIIRSHEVKDEGYEVEHSGKLITVFSAPNYCDQMG-----NKGAFIHLEPDDL 448 (476)
T ss_pred CCCHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCEEEEECCCCHHHHCC-----CCCEEEEECCCCC
T ss_conf 8711667765366777632446777534520786787744762222038-----8513899627888
No 89
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=57.74 E-value=10 Score=17.03 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 330899999999996269979999374
Q gi|255764495|r 47 YFSKEVANLLINDILLHNVDHVSITGD 73 (309)
Q Consensus 47 ~~~~~~l~~~~~~i~~~~pD~vvitGD 73 (309)
..-...++.+-+.+++.+||.+||-||
T Consensus 69 a~c~~ald~l~~~i~~akpDV~VIvGn 95 (328)
T cd07366 69 ARCQAALDRLADFIRAARIDVAVIVGD 95 (328)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 899999999999999758988999818
No 90
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=56.87 E-value=9.8 Score=17.10 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 30899999999996269979999374
Q gi|255764495|r 48 FSKEVANLLINDILLHNVDHVSITGD 73 (309)
Q Consensus 48 ~~~~~l~~~~~~i~~~~pD~vvitGD 73 (309)
.-.+.++.+-+.+++.+||.+||-||
T Consensus 72 ~c~~ald~la~~ia~akpDV~VIvGn 97 (335)
T PRK13363 72 QCEAAIDQLRDRIRAARLDVAVIVGN 97 (335)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 99999999999999758998999807
No 91
>pfam02350 Epimerase_2 UDP-N-acetylglucosamine 2-epimerase. This family consists of UDP-N-acetylglucosamine 2-epimerases EC:5.1.3.14 this enzyme catalyses the production of UDP-ManNAc from UDP-GlcNAc. Note that some of the enzymes is this family are bifunctional, in this instance Pfam matches only the N-terminal half of the protein suggesting that the additional C-terminal part (when compared to mono-functional members of this family) is responsible for the UPD-N-acetylmannosamine kinase activity of these enzymes. This hypothesis is further supported by the assumption that the C-terminal part of rat bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase is the kinase domain.
Probab=55.31 E-value=13 Score=16.19 Aligned_cols=48 Identities=13% Similarity=-0.017 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 89999999999626997999937444489989999999999861899718999458
Q gi|255764495|r 50 KEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGN 105 (309)
Q Consensus 50 ~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GN 105 (309)
...+..+-+.+.+.+||+|++.||-.. .+..+... ....+|+..+-|-
T Consensus 53 ~~~i~~~~~~l~~~~PD~vlv~GDr~e-----~la~aiaa---~~~~ipi~HiegG 100 (346)
T pfam02350 53 GRILIGLEDVLEEEKPDLVLVLGDTNE-----TLAGALAA---FYLRIPVAHVEAG 100 (346)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCH-----HHHHHHHH---HHHCCCEEEEECC
T ss_conf 999999999999829999999689715-----88999999---9819848995268
No 92
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase; InterPro: IPR013375 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Many archaeal species lack cysteinyl-tRNA synthetase, an essential enzyme that provides Cys-tRNA(Cys) in other organisms. Instead, in a two step pathway, tRNA-Cys is acylated with O-phosphoserine (Sep) to form Sep-tRNA(Cys), which is subsequently converted to Cys-tRNA(Cys) . This pathway is also thought to function as the sole route of cysteine biosynthesis in these organisms. Several other archaeal species use both this pathway and direct tRNA(Cys) aminoacylation to synthesize Cys-tRNA(Cys), but this pathway appears to be the only route for cysteine biosynthesis. Proteins in this entry catalyse the second step in this pathway using pyridoxal phosphate and a sulphur donor to synthesize Cys from Sep while attached to the tRNA..
Probab=54.81 E-value=14 Score=16.14 Aligned_cols=50 Identities=12% Similarity=0.278 Sum_probs=33.4
Q ss_pred HHHHHHHHCCCC---CCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEC
Q ss_conf 999998524336---97089998376888764311012797899999987498199998
Q gi|255764495|r 174 ATSKLLRKANKK---GFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHG 229 (309)
Q Consensus 174 ~l~~~L~~~~~~---~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~G 229 (309)
-.++.+++..++ +...++++| + +....++.||..+.++..+++|-++|+|
T Consensus 133 ~Y~~viee~~d~~G~~~~LallTh-v-----DG~YGNL~DA~kva~vc~~~gvPlLLNC 185 (381)
T TIGR02539 133 GYKEVIEEVEDESGKPVALALLTH-V-----DGEYGNLADAKKVAKVCREKGVPLLLNC 185 (381)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEE-C-----CCCCCCCHHHHHHHHHHHHCCCCEEECC
T ss_conf 788888655202798834899840-2-----6886751124568766542078622124
No 93
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=54.80 E-value=14 Score=16.14 Aligned_cols=45 Identities=7% Similarity=0.210 Sum_probs=23.7
Q ss_pred HHHHHHHHHC---CCEEEEECCC-----------CCCEEEEEE----CCCCCEEEEEECCCCC
Q ss_conf 8999999874---9819999876-----------753247871----6998689999576235
Q gi|255764495|r 212 QRFQKMIWHE---GADLILHGHT-----------HLNSLHWIK----NEKKLIPVVGIASASQ 256 (309)
Q Consensus 212 ~~l~~~l~~~---~v~lvl~GH~-----------H~~~~~~~~----~~~~~~~~~~~~s~~~ 256 (309)
+++++++..| ....++.|=+ |+.+....+ ....+...|+||+...
T Consensus 329 e~VR~~v~lYArs~atVLi~GE~GTGKElvAq~~H~EY~~R~~~~~~r~~~pFVAiNCGAi~E 391 (658)
T TIGR02329 329 EQVRALVRLYARSAATVLIEGESGTGKELVAQAIHREYALRYDQLSGRRDRPFVAINCGAIAE 391 (658)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHH
T ss_conf 899999985268865067514777228999999759998746665013378846874746568
No 94
>pfam01026 TatD_DNase TatD related DNase. This family of proteins are related to a large superfamily of metalloenzymes. TatD, a member of this family has been shown experimentally to be a DNase enzyme.
Probab=54.46 E-value=14 Score=16.10 Aligned_cols=131 Identities=16% Similarity=0.164 Sum_probs=72.2
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999626997999937444489989999999999861899718999458842222035676643245431344444
Q gi|255764495|r 53 ANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCS 132 (309)
Q Consensus 53 l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (309)
++.+++.+.+.+...+++.|-- ++++..+.++.+.. +..|+...|=|=.+..............+.....
T Consensus 16 ~~~vl~~a~~~gv~~ii~~~~~-----~~~~~~~~~la~~~--~~~v~~~~GiHP~~~~~~~~~~~~~l~~~~~~~~--- 85 (255)
T pfam01026 16 RDEVIERAREAGVTAVVVVGTD-----LKDFERALELARKY--PGKVYAAVGVHPHEADEASEEVLEALEKLKLAEH--- 85 (255)
T ss_pred HHHHHHHHHHCCCCEEEEECCC-----HHHHHHHHHHHHHC--CCCEEEEECCCHHHHCCCCHHHHHHHHHHHHCCC---
T ss_conf 9999999998799989995699-----99999999999768--7667899535810115168899999999974358---
Q ss_pred CCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 55562127997198799983288888875547600899999999998524336970899983768887643110127978
Q gi|255764495|r 133 TGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQ 212 (309)
Q Consensus 133 ~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~ 212 (309)
+.+ -.+.=+|||-.... ....+.|...++++|+-+.+-+.+ ++.|-. ...+
T Consensus 86 ------~~~---vaIGEiGLD~~~~~------~~~~~~Q~~~F~~ql~lA~~~~lP--vilH~r------------~a~~ 136 (255)
T pfam01026 86 ------PKV---VAIGEIGLDYYYVD------ESPKEAQEEVFRRQLELAKELDLP--VVIHTR------------DAEE 136 (255)
T ss_pred ------CCE---EEEEECCCCCCCCC------CCCHHHHHHHHHHHHHHHHHHCCC--EEEEEC------------CHHH
T ss_conf ------987---99980135776579------998999999999999999870897--489845------------5399
Q ss_pred HHHHHHHHCC
Q ss_conf 9999998749
Q gi|255764495|r 213 RFQKMIWHEG 222 (309)
Q Consensus 213 ~l~~~l~~~~ 222 (309)
++.++|++++
T Consensus 137 ~~~~il~~~~ 146 (255)
T pfam01026 137 DLLEILKEAG 146 (255)
T ss_pred HHHHHHHHHC
T ss_conf 9999999826
No 95
>KOG2732 consensus
Probab=53.68 E-value=14 Score=16.02 Aligned_cols=173 Identities=13% Similarity=0.115 Sum_probs=93.9
Q ss_pred CCEEEECCCCCCC---------------------CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHH-HHHH
Q ss_conf 9799993744448---------------------99899999999998618997189994588422220356766-4324
Q gi|255764495|r 65 VDHVSITGDIVNF---------------------TCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSL-HAWK 122 (309)
Q Consensus 65 pD~vvitGDl~~~---------------------~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~-~~~~ 122 (309)
.+-++++|-++.. .+......+..++.+.....+|-+.||--|..........+ +...
T Consensus 218 i~rliv~Gn~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ld~~L~~~~~s~~VdimPG~~Dp~~~~lPqqPlh~~lf 297 (435)
T KOG2732 218 IGRLIVAGNSLSFSIKILDSQSTSISRLTKKDSAASVIPVKELDNFLAQIPASISVDIMPGVNDPSNFMLPQQPLHRCLF 297 (435)
T ss_pred CCEEEEECCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHH
T ss_conf 53089954524503305553114665024466434423088888999734566876677888780430277677556661
Q ss_pred HHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEE--CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
Q ss_conf 543134444455562127997198799983288888875547600--899999999998524336970899983768887
Q gi|255764495|r 123 DYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYF--GQEQAHATSKLLRKANKKGFFRIIMMHHPPVLD 200 (309)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~--~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~ 200 (309)
+..... .......-.+|....+++++.+... .......++ ....++.++. .+-.-|..|..+
T Consensus 298 p~s~~~-~~~~q~vTNPy~~~ld~~~vl~tSG----qNvsDl~ry~~~~s~ld~le~-----------tlkw~HvaPTaP 361 (435)
T KOG2732 298 PKSPQS-LSTLQLVTNPYEFSLDGARVLGTSG----QNVSDLLRYSSKKSGLDALEN-----------TLKWGHVAPTAP 361 (435)
T ss_pred CCCCCC-CCHHHCCCCCEEEEECCEEEEECCC----CCHHHHHHHCCHHHHHHHHHH-----------HHEECCCCCCCC
T ss_conf 467532-0013100475488876888970487----567888620210337889865-----------123113269999
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCC
Q ss_conf 64311012797899999987498199998767532478716998689999576235
Q gi|255764495|r 201 TSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQ 256 (309)
Q Consensus 201 ~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~ 256 (309)
.+-+-..+.+.+-|. +.+. .++++||-.-.-....+.+.+..+..+.+|..+.
T Consensus 362 DTL~cyPftekDPFv--~~~~-Phvy~~GNqp~f~~r~i~~~g~~~~Lv~VP~Fsk 414 (435)
T KOG2732 362 DTLWCYPFTEKDPFV--MDEC-PHVYIVGNQPKFGTRLIEGGGKNTLLVCVPKFSK 414 (435)
T ss_pred CCCCCCCCCCCCCEE--ECCC-CEEEEECCCCCCCCEEEECCCCEEEEEECCCCCC
T ss_conf 841311034689724--3379-7089965887414504636982499998155156
No 96
>pfam01784 NIF3 NIF3 (NGG1p interacting factor 3). This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown.
Probab=53.15 E-value=15 Score=15.96 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH---HHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 89999999999626997999937444489989---999999999861899718999458842222
Q gi|255764495|r 50 KEVANLLINDILLHNVDHVSITGDIVNFTCNR---EIFTSTHWLRSIGNPHDISIVPGNHDAYIS 111 (309)
Q Consensus 50 ~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~---~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~ 111 (309)
.+.-+.+++.+.+.+.|+|+.===++..+... +..........+...+.+|..-=|-|....
T Consensus 39 lD~t~~vi~~A~~~~~dlIItHHPl~f~~~~~~~~~~~~~~~~~~li~~~I~vy~~Ht~lD~~~~ 103 (238)
T pfam01784 39 LDATEEVIEEAIENGADLIITHHPLIFKPLKRITGDDPKGRIILKLIKNNISLYSAHTNLDAAPG 103 (238)
T ss_pred EECCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHCCCC
T ss_conf 82999999999977999999738751168655556777899999999669669980550110685
No 97
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=52.82 E-value=15 Score=15.93 Aligned_cols=130 Identities=8% Similarity=0.043 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999962699799993744448998999999999986189971899945884222203567664324543134444
Q gi|255764495|r 52 VANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTC 131 (309)
Q Consensus 52 ~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~ 131 (309)
-++.+++.+.+.+...+++.|. .++++..+.++.+... .+++..|=|=.+...............+.....
T Consensus 20 d~~~vi~~a~~~gv~~i~~~g~-----~~~~~~~~~~l~~~~~---~i~~~vGiHP~~~~~~~~~~~~~l~~~l~~~~~- 90 (258)
T PRK11449 20 DEEASLQRAAQAGVGKIIVPAT-----EAANFARVLALAERYQ---PLYAALGLHPGMLEKHSDVSLDQLQQALERRPA- 90 (258)
T ss_pred CHHHHHHHHHHCCCCEEEEECC-----CHHHHHHHHHHHHHCC---CCEEECCCCCCHHHCCCCCCHHHHHHHHHHCCC-
T ss_conf 9999999999829999999349-----9999999999987596---301870589761110570059999999981878-
Q ss_pred CCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCH
Q ss_conf 45556212799719879998328888887554760089999999999852433697089998376888764311012797
Q gi|255764495|r 132 STGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGI 211 (309)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~ 211 (309)
.+. .+.=+|||-.... .-.+.|...++++++-+.+-+.+ ++.|-- ...
T Consensus 91 --------~vv---aIGEiGLDy~~~~-------~~~~~Q~~~F~~ql~lA~~~~lP--vviH~R------------~A~ 138 (258)
T PRK11449 91 --------KVV---AVGEIGLDLFGDD-------PQFERQQWLLDEQLKLAKRYDLP--VILHSR------------RTH 138 (258)
T ss_pred --------CEE---EEECCCCCCCCCC-------CHHHHHHHHHHHHHHHHHHHCCC--EEEECH------------HHH
T ss_conf --------789---9834564778899-------86999999999999999984997--598622------------137
Q ss_pred HHHHHHHHHCC
Q ss_conf 89999998749
Q gi|255764495|r 212 QRFQKMIWHEG 222 (309)
Q Consensus 212 ~~l~~~l~~~~ 222 (309)
+.+..+|.+++
T Consensus 139 ~~~~~~l~~~~ 149 (258)
T PRK11449 139 DKLAMHLKRHD 149 (258)
T ss_pred HHHHHHHHHCC
T ss_conf 99999998558
No 98
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase; InterPro: IPR004607 This family describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins found in formyltransferase. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a different GAR transformylase, uses ATP and formate rather than formyl tetrahydrofolate. Experimental proof includes complementation of Escherichia coli purN mutants by orthologs from vertebrates (where it is a domain of a multifunctional protein), Bacillus subtilis, and Arabidopsis thaliana. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup. ; GO: 0004644 phosphoribosylglycinamide formyltransferase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=51.42 E-value=15 Score=15.97 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=7.3
Q ss_pred HHHHHHHHHH--CCCC
Q ss_conf 9999999962--6997
Q gi|255764495|r 53 ANLLINDILL--HNVD 66 (309)
Q Consensus 53 l~~~~~~i~~--~~pD 66 (309)
|+++++++++ .+.|
T Consensus 14 LqAiiDA~~~~~~~~~ 29 (215)
T TIGR00639 14 LQAIIDAIKEGQGKID 29 (215)
T ss_pred HHHHHHHHHHCCCCCC
T ss_conf 9999999852127867
No 99
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=50.50 E-value=16 Score=15.70 Aligned_cols=11 Identities=36% Similarity=0.271 Sum_probs=5.1
Q ss_pred CCEEEECCCCC
Q ss_conf 97999937444
Q gi|255764495|r 65 VDHVSITGDIV 75 (309)
Q Consensus 65 pD~vvitGDl~ 75 (309)
.|+|+.+|-..
T Consensus 59 ~DlIIttGG~s 69 (133)
T cd00758 59 ADLVLTTGGTG 69 (133)
T ss_pred CCEEEECCCCC
T ss_conf 99999938866
No 100
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=50.39 E-value=16 Score=15.68 Aligned_cols=25 Identities=16% Similarity=0.008 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 9999999999626997999937444
Q gi|255764495|r 51 EVANLLINDILLHNVDHVSITGDIV 75 (309)
Q Consensus 51 ~~l~~~~~~i~~~~pD~vvitGDl~ 75 (309)
..+..+-+.+.+++||+|++-||-.
T Consensus 80 ~~~~~~~~~l~~~kPD~VlV~GDt~ 104 (365)
T TIGR03568 80 LTIIGFSDAFERLKPDLVVVLGDRF 104 (365)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9999999998543998999948986
No 101
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=49.91 E-value=16 Score=15.64 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 3089999999999626997999937444
Q gi|255764495|r 48 FSKEVANLLINDILLHNVDHVSITGDIV 75 (309)
Q Consensus 48 ~~~~~l~~~~~~i~~~~pD~vvitGDl~ 75 (309)
....++..+-+.+.+++||.|++-||-+
T Consensus 76 ~t~~~i~~~~~vl~~~kPD~VlVhGDT~ 103 (383)
T COG0381 76 ITGNIIEGLSKVLEEEKPDLVLVHGDTN 103 (383)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 9999999999999862999899917853
No 102
>KOG0375 consensus
Probab=48.16 E-value=16 Score=15.77 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=13.2
Q ss_pred HHCCCCCEEEEECCCCCCC
Q ss_conf 6189971899945884222
Q gi|255764495|r 92 SIGNPHDISIVPGNHDAYI 110 (309)
Q Consensus 92 ~l~~~~~v~~v~GNHD~~~ 110 (309)
.+.-|...+...|||+...
T Consensus 142 Ki~yp~tl~lLRGNHECrH 160 (517)
T KOG0375 142 KINYPKTLFLLRGNHECRH 160 (517)
T ss_pred HCCCCCEEEEECCCCCHHH
T ss_conf 6078770687507720011
No 103
>pfam07819 PGAP1 PGAP1-like protein. The sequences found in this family are similar to PGAP1. This is an endoplasmic reticulum membrane protein with a catalytic serine containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body.
Probab=46.64 E-value=18 Score=15.31 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=12.5
Q ss_pred CCCCEEEEECCCCCCC
Q ss_conf 9971899945884222
Q gi|255764495|r 95 NPHDISIVPGNHDAYI 110 (309)
Q Consensus 95 ~~~~v~~v~GNHD~~~ 110 (309)
...||.+||||.=.|.
T Consensus 3 ~GiPVLFIPGNaGSyk 18 (225)
T pfam07819 3 SGIPVLFIPGNAGSYK 18 (225)
T ss_pred CCCEEEEECCCCCCHH
T ss_conf 8860898689988678
No 104
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=46.64 E-value=18 Score=15.31 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=24.1
Q ss_pred HHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 999852433697089998376888764311012797899999987
Q gi|255764495|r 176 SKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWH 220 (309)
Q Consensus 176 ~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~ 220 (309)
.+.|+.++.+.++.+|..|.|-.......-....-.+.+.+.+.+
T Consensus 7 ~qAL~~Ak~e~KfLlVYLhs~~h~dt~~F~r~~L~~~~vv~~in~ 51 (116)
T cd02991 7 SQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT 51 (116)
T ss_pred HHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999998385899998179998888999986388999999750
No 105
>PRK13670 hypothetical protein; Provisional
Probab=46.44 E-value=18 Score=15.29 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=16.9
Q ss_pred HHHHHHC-CCC--EEEECCCCCCCCCHHHH
Q ss_conf 9999626-997--99993744448998999
Q gi|255764495|r 57 INDILLH-NVD--HVSITGDIVNFTCNREI 83 (309)
Q Consensus 57 ~~~i~~~-~pD--~vvitGDl~~~~~~~~~ 83 (309)
++.+++. ++| .+|.+|+.+++|.|+-+
T Consensus 21 i~~ar~~t~ad~iIaVMSGnFvQRGEPAi~ 50 (390)
T PRK13670 21 LNQAKKLTKADVTIAVMSGNFVQRGEPAIV 50 (390)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCHHC
T ss_conf 999997539987999943885108872007
No 106
>PRK13671 hypothetical protein; Provisional
Probab=46.34 E-value=18 Score=15.28 Aligned_cols=32 Identities=13% Similarity=0.001 Sum_probs=19.2
Q ss_pred HHHHHHC-CCCE--EEECCCCCCCCCHHHHHHHHH
Q ss_conf 9999626-9979--999374444899899999999
Q gi|255764495|r 57 INDILLH-NVDH--VSITGDIVNFTCNREIFTSTH 88 (309)
Q Consensus 57 ~~~i~~~-~pD~--vvitGDl~~~~~~~~~~~~~~ 88 (309)
++.+++. ++|. +|.+||.+++|.|+-++...+
T Consensus 20 i~qar~~~~ad~iIavMSGnFvQRGEPAi~dKw~R 54 (298)
T PRK13671 20 INYIKNKFPNEKIIIILSGKYTQRGEIAVASFEKR 54 (298)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCHHCCHHHH
T ss_conf 99999865998599994588520886111788899
No 107
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=45.46 E-value=19 Score=15.19 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHH---CCCCEEEE--CCCCCCCC--CHHHH----HHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 308999999999962---69979999--37444489--98999----999999986189971899945884
Q gi|255764495|r 48 FSKEVANLLINDILL---HNVDHVSI--TGDIVNFT--CNREI----FTSTHWLRSIGNPHDISIVPGNHD 107 (309)
Q Consensus 48 ~~~~~l~~~~~~i~~---~~pD~vvi--tGDl~~~~--~~~~~----~~~~~~~~~l~~~~~v~~v~GNHD 107 (309)
...++++..++++.+ -+.|.|++ =||.-... .++.. ....+..+....|..| -|.=|--
T Consensus 28 ~~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGv-NVLrNd~ 97 (263)
T COG0434 28 SLEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGV-NVLRNDA 97 (263)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE-EEECCCC
T ss_conf 879999999989999984897689971357887777797478899999999998750766103-2102662
No 108
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=43.15 E-value=21 Score=14.96 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=34.2
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 99999999626997999937444489989999999999861899718999458842
Q gi|255764495|r 53 ANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDA 108 (309)
Q Consensus 53 l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~ 108 (309)
-+.+++.+.+.+||.|.+|.=.+.. ......+.+.++..... +.++.|.+=.
T Consensus 39 ~e~~v~~~~~~~~dvVgiS~~~~~~--~~~~~~~~~~~~~~~~~--v~vv~GG~~~ 90 (125)
T cd02065 39 PEEIVEAAKEEDADVVGLSALSTTH--MEAMKLVIEALKELGID--IPVVVGGAHP 90 (125)
T ss_pred HHHHHHHHHHHCCCEEEEECCHHHH--HHHHHHHHHHHHHCCCC--CEEEECCCCC
T ss_conf 9999999986089999985211301--89999999999967998--7599758879
No 109
>pfam03437 BtpA BtpA family. The BtpA protein is tightly associated with the thylakoid membranes, where it stabilizes the reaction centre proteins of photosystem I.
Probab=42.23 E-value=21 Score=14.87 Aligned_cols=72 Identities=19% Similarity=0.168 Sum_probs=37.5
Q ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH---CCCCEEEE--CCCCCC--CCCHHHHHHHH
Q ss_conf 411142788541000222100012100000123308999999999962---69979999--374444--89989999999
Q gi|255764495|r 15 ISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILL---HNVDHVSI--TGDIVN--FTCNREIFTST 87 (309)
Q Consensus 15 lSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~---~~pD~vvi--tGDl~~--~~~~~~~~~~~ 87 (309)
|.=+||.+.|.... ..-....+++.+++++.. -+.|.|++ -||+-. .-.++......
T Consensus 6 IGMvHL~pLPGsP~----------------~~~~~~~iie~A~~ea~~l~~~GvDgvivEN~~D~Py~~~~~~etvaamt 69 (254)
T pfam03437 6 IGVVHLLPLPGSPG----------------YKANLDAVIDKAVSDAMALEEGGFDAVILENYGDAPYLKTVGPETVAAMT 69 (254)
T ss_pred EEEECCCCCCCCCC----------------CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 99983799998988----------------89999999999999999999779988998068997774677669899999
Q ss_pred ----HHHHHHCCCCCEEEE
Q ss_conf ----999861899718999
Q gi|255764495|r 88 ----HWLRSIGNPHDISIV 102 (309)
Q Consensus 88 ----~~~~~l~~~~~v~~v 102 (309)
+.-+.+..|+.|-+.
T Consensus 70 ~i~~~v~~~~~iP~GvnvL 88 (254)
T pfam03437 70 VIAGEVKSDVSIPLGINVL 88 (254)
T ss_pred HHHHHHHHHCCCCEEEEEE
T ss_conf 9999998744887367776
No 110
>PRK10834 hypothetical protein; Provisional
Probab=42.16 E-value=21 Score=14.86 Aligned_cols=54 Identities=17% Similarity=0.061 Sum_probs=34.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 0012330899999999996269979999374444899899999999998618997
Q gi|255764495|r 43 NRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPH 97 (309)
Q Consensus 43 ~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~ 97 (309)
++...+....+++.++.-++-+.+.++++||-...+-.+- ...++.+.+-+.|.
T Consensus 60 G~pn~~~~~RldaA~~LY~~GKv~~iLvSGDn~~~~YnEp-~~Mk~~Li~~GVP~ 113 (239)
T PRK10834 60 GVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEP-MTMRKDLIAAGVDP 113 (239)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHCCCCH
T ss_conf 9819899999999999998699748986689998889828-99999999859989
No 111
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=41.54 E-value=22 Score=14.80 Aligned_cols=138 Identities=14% Similarity=0.147 Sum_probs=77.4
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999626997999937444489989999999999861899718999458842222035676643245431344444
Q gi|255764495|r 53 ANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCS 132 (309)
Q Consensus 53 l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (309)
.+.+++.+.+.+...++++|.- .+.+..+.++.+... .+|...|=|=.......+........+...
T Consensus 19 ~~~vi~~a~~~gv~~~~~~g~~-----~~~~~~~~~la~~y~---~v~~~~G~HP~~~~~~~~~~~~~l~~~~~~----- 85 (256)
T COG0084 19 RDEVIARAREAGVKKMVVVGTD-----LEDFKRALELAEKYP---NVYAAVGVHPLDADEHSEEDLEELEQLAEH----- 85 (256)
T ss_pred HHHHHHHHHHCCCCEEEEEECC-----HHHHHHHHHHHHHCC---CEEEEEEECCCCCCCCCHHHHHHHHHHHHC-----
T ss_conf 9999999998599379996158-----888899999998689---868998668873333678899999998721-----
Q ss_pred CCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 55562127997198799983288888875547600899999999998524336970899983768887643110127978
Q gi|255764495|r 133 TGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQ 212 (309)
Q Consensus 133 ~~~~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~ 212 (309)
.+.+. .+.=+|||-.+...+ -.+.|...++++|+-++.-+.+ ++.|-. .-.+
T Consensus 86 -----~~~vv---aIGEiGLDy~~~~~~------~~~~Q~~~F~~ql~lA~~~~lP--viIH~R------------~A~~ 137 (256)
T COG0084 86 -----HPKVV---AIGEIGLDYYWDKEP------DKERQEEVFEAQLELAKELNLP--VIIHTR------------DAHE 137 (256)
T ss_pred -----CCCEE---EEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHCCCC--EEEECC------------CCHH
T ss_conf -----89858---998334685656664------4789999999999999973997--799867------------4279
Q ss_pred HHHHHHHHCC--CEEEEECCC
Q ss_conf 9999998749--819999876
Q gi|255764495|r 213 RFQKMIWHEG--ADLILHGHT 231 (309)
Q Consensus 213 ~l~~~l~~~~--v~lvl~GH~ 231 (309)
.+.++|++.+ ...|+|.-+
T Consensus 138 d~~~iL~~~~~~~~gi~HcFs 158 (256)
T COG0084 138 DTLEILKEEGAPVGGVLHCFS 158 (256)
T ss_pred HHHHHHHHCCCCCCEEEECCC
T ss_conf 999999864878888998378
No 112
>COG3931 Predicted N-formylglutamate amidohydrolase [Amino acid transport and metabolism]
Probab=40.92 E-value=14 Score=16.13 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=12.4
Q ss_pred CEEEEECCCCCCCCCHHHH
Q ss_conf 1899945884222203567
Q gi|255764495|r 98 DISIVPGNHDAYISGAKEK 116 (309)
Q Consensus 98 ~v~~v~GNHD~~~~~~~~~ 116 (309)
.++.|||||+........+
T Consensus 101 e~~~VPgN~~ls~~ER~~R 119 (263)
T COG3931 101 EGTVVPGNHPLSEEERRAR 119 (263)
T ss_pred CCEECCCCCCCCHHHHHHH
T ss_conf 5532568898899999988
No 113
>TIGR00633 xth exodeoxyribonuclease III (xth); InterPro: IPR004808 All proteins in this family for which functions are known are 5' AP endonucleases that function in base excision repair and the repair of abasic sites in DNA.; GO: 0004518 nuclease activity, 0006281 DNA repair.
Probab=40.21 E-value=23 Score=14.67 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=16.7
Q ss_pred CHHHHHHH--HHHHHHCCCCEEEE
Q ss_conf 08999999--99996269979999
Q gi|255764495|r 49 SKEVANLL--INDILLHNVDHVSI 70 (309)
Q Consensus 49 ~~~~l~~~--~~~i~~~~pD~vvi 70 (309)
..+.+... ++.+.+++||.|.+
T Consensus 11 lRA~~~~~sfL~~l~~~~pDvLCL 34 (279)
T TIGR00633 11 LRARLKKLSFLDWLKEENPDVLCL 34 (279)
T ss_pred HHHHCCHHHHHHHHHHCCCCEEEE
T ss_conf 442135112888986538978762
No 114
>KOG2476 consensus
Probab=39.57 E-value=23 Score=14.61 Aligned_cols=164 Identities=10% Similarity=0.042 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHCCC-CEEEECCCCCCCC-CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999999962699-7999937444489-989999999999861899718999458842222035676643245431344
Q gi|255764495|r 52 VANLLINDILLHNV-DHVSITGDIVNFT-CNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDT 129 (309)
Q Consensus 52 ~l~~~~~~i~~~~p-D~vvitGDl~~~~-~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~ 129 (309)
+++.+-+--+..+| |++++-|+++... ..+|+.... ......|+|+|+.-+|--... .++....
T Consensus 21 li~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~yk--ng~~~vPiptY~~g~~~~~~~------------ky~~n~~ 86 (528)
T KOG2476 21 LIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYK--NGTKKVPIPTYFLGDNANETE------------KYFENSD 86 (528)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHH--CCCCCCCEEEEEECCCCCCCC------------EECCCCC
T ss_conf 99999998633798208998325578844215789875--277567435898337888630------------0024677
Q ss_pred CCCCCC-----CCCEEEEECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC--
Q ss_conf 444555-----6212799719879998328888887554760089999999999852433697089998376888764--
Q gi|255764495|r 130 TCSTGK-----KLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTS-- 202 (309)
Q Consensus 130 ~~~~~~-----~~~~~~~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~-- 202 (309)
+..... +.-.......++.|.-|...... .........+..+.+...+.-.......-|++.--=|...+.
T Consensus 87 g~Ei~~Nlt~Lg~~G~~~l~sGl~IaYLsG~e~~--~~~~~~fs~~dv~~l~~~~~~~~~~~gvDILlTseWP~~v~e~~ 164 (528)
T KOG2476 87 GKEIAENLTYLGRKGTYKLASGLTIAYLSGPESS--EKGESKFSQADVDELRHRLDTQKEFKGVDILLTSEWPADVQERN 164 (528)
T ss_pred CCCCCCCEEEECCCCEEEECCCCEEEEEECCCCC--CCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHCC
T ss_conf 7511445245415553760477179996144334--56644248878999833113223457700897157752022224
Q ss_pred ---CCCCCCCCHHHHHHHHHHCCCEEEEECCC
Q ss_conf ---31101279789999998749819999876
Q gi|255764495|r 203 ---SLYNRMFGIQRFQKMIWHEGADLILHGHT 231 (309)
Q Consensus 203 ---~~~~~~~~~~~l~~~l~~~~v~lvl~GH~ 231 (309)
.......+..-+.++.++....+.++|=.
T Consensus 165 ss~~~~~~~~gs~lvs~La~~lkPRYHFa~~~ 196 (528)
T KOG2476 165 SSLPESKRLCGSELVSELAAELKPRYHFAGSD 196 (528)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCEEECCCC
T ss_conf 56765567751089999997358536761478
No 115
>pfam08413 Metallophos_C Calcineurin-like phosphoesterase C-terminal. This domain is found to the C-terminus of Calcineurin-like phosphoesterase domains (pfam00149) in cAMP phosphodiesterases and the homologous Icc proteins.
Probab=39.49 E-value=23 Score=14.60 Aligned_cols=32 Identities=9% Similarity=0.177 Sum_probs=19.8
Q ss_pred CEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCEEEE
Q ss_conf 6899995762357788887785489999538983899
Q gi|255764495|r 245 LIPVVGIASASQKVHSNKPQASYNLFYIEKKNEYWTL 281 (309)
Q Consensus 245 ~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~~~~~v 281 (309)
.+.++++||++..+..... -+.|+....+||.
T Consensus 2 gv~~l~tPSTC~QF~p~s~-----~F~lD~~~PGyR~ 33 (38)
T pfam08413 2 GVRLLATPSTCVQFKPKSP-----DFALDTLAPGYRW 33 (38)
T ss_pred CCEEEECCCCEEEECCCCC-----CEEECCCCCCCEE
T ss_conf 9779848975365457998-----5356488984189
No 116
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=39.23 E-value=24 Score=14.57 Aligned_cols=49 Identities=14% Similarity=0.057 Sum_probs=21.7
Q ss_pred HHHHHHHHHCCCEEE---EECCCCCCEEEEEE--CCCCCEEEEEECCCCCCCCC
Q ss_conf 899999987498199---99876753247871--69986899995762357788
Q gi|255764495|r 212 QRFQKMIWHEGADLI---LHGHTHLNSLHWIK--NEKKLIPVVGIASASQKVHS 260 (309)
Q Consensus 212 ~~l~~~l~~~~v~lv---l~GH~H~~~~~~~~--~~~~~~~~~~~~s~~~~~~~ 260 (309)
..+.+-|++++..++ ++-|.-......+. -.++...++.++|++..+.+
T Consensus 182 ~v~~~rl~~~G~~l~~~~~v~dd~~~ia~aI~~~~~~ga~lvi~tgsasvDpdD 235 (312)
T cd03522 182 PVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGASVDPDD 235 (312)
T ss_pred HHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 899999997498465579558989999999999986899399944875428863
No 117
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; InterPro: IPR005995 This 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (iPGAM) is a metalloenzyme found particularly in eubacteria and higher plants. It is distantly related to archaeal iPGAM (IPR004456 from INTERPRO) and distinct from the unrelated cofactor-dependent PGAM (PIRSF001490 from PIRSF). Activity has been demonstrated for proteins from a variety of organisms, including Pseudomonas syringae pv. tomato , Bacillus subtilis , Bacillus stearothermophilus , maize , castor bean , and Trypanosoma brucei . The structure of the B. stearothermophilus enzyme (PDB:1EJJ) has two domains . Residues 1-76 and 311-511 form the phosphatase domain, containing the active site residue and two metal-binding sites. This domain is similar to alkaline phosphatase (PDB:1ALK) and arylsulphatase (PDB:1AUK), which are members of the SCOP alkaline phosphatase-like superfamily, but there is meagre sequence similarity outside of the metal-binding segments. Residues 77-310 form the phosphotransferase domain, which is poorly conserved (or perhaps unrelated) in the archaeal enzymes.; GO: 0004619 phosphoglycerate mutase activity, 0006007 glucose catabolic process.
Probab=38.76 E-value=24 Score=14.52 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=12.7
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCEEEEE
Q ss_conf 8999999874981999987675324787
Q gi|255764495|r 212 QRFQKMIWHEGADLILHGHTHLNSLHWI 239 (309)
Q Consensus 212 ~~l~~~l~~~~v~lvl~GH~H~~~~~~~ 239 (309)
.++.+.+++.+..+.|.- .|.|.-...
T Consensus 435 gri~~~~~~~g~~~llTA-DHGNAE~M~ 461 (529)
T TIGR01307 435 GRIVEACKKVGGTLLLTA-DHGNAEEMK 461 (529)
T ss_pred HHHHHHHHHCCCEEEEEE-CCCCCCCCC
T ss_conf 999999974896299960-556600167
No 118
>PRK10799 putative hydrolase-oxidase; Provisional
Probab=37.24 E-value=25 Score=14.37 Aligned_cols=62 Identities=11% Similarity=-0.043 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHH-H-HHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 308999999999962699799993744448998999-9-9999998618997189994588422
Q gi|255764495|r 48 FSKEVANLLINDILLHNVDHVSITGDIVNFTCNREI-F-TSTHWLRSIGNPHDISIVPGNHDAY 109 (309)
Q Consensus 48 ~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~-~-~~~~~~~~l~~~~~v~~v~GNHD~~ 109 (309)
...+.-..+++.+.+.+.|+|+.==-++..+..... . ....+..-+...+.+|..--|=|..
T Consensus 40 ~alD~t~~vi~eAi~~~aDliitHHpl~~~~~~~~~~g~~~~rl~~Li~~~I~lya~Ht~lD~~ 103 (247)
T PRK10799 40 TGVTASQALLDEAVRLQADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAH 103 (247)
T ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCHHHC
T ss_conf 9956989999999985999999867400278877567837799999997896689841572224
No 119
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=36.85 E-value=26 Score=14.33 Aligned_cols=59 Identities=19% Similarity=0.105 Sum_probs=39.3
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 000012330899999999996269979999-374444899899999999998618997189994
Q gi|255764495|r 41 HFNRKKYFSKEVANLLINDILLHNVDHVSI-TGDIVNFTCNREIFTSTHWLRSIGNPHDISIVP 103 (309)
Q Consensus 41 ~~~~~~~~~~~~l~~~~~~i~~~~pD~vvi-tGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~ 103 (309)
.+.|.+....+-++++++.+++.+.|.+|| .||-++. ....+.+.+..-.....|.-||
T Consensus 143 ~sgr~ki~t~eq~~~~~~~~~~l~LdgLVIiGGddSnT----naa~LAEyf~~~~~~t~VIGvP 202 (550)
T cd00765 143 CSGRTKIETEDQFKQAEETAKKLDLDALVVIGGDDSNT----NAALLAENFRSKGLKTRVIGVP 202 (550)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH----HHHHHHHHHHHCCCCCEEEECC
T ss_conf 68856248999999999999985998799968987348----7999999999649995599345
No 120
>pfam05636 DUF795 Protein of unknown function (DUF795). This family consists of several bacterial proteins of unknown function.
Probab=36.81 E-value=26 Score=14.33 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=16.7
Q ss_pred HHHHHH-CCCCE--EEECCCCCCCCCHHHH
Q ss_conf 999962-69979--9993744448998999
Q gi|255764495|r 57 INDILL-HNVDH--VSITGDIVNFTCNREI 83 (309)
Q Consensus 57 ~~~i~~-~~pD~--vvitGDl~~~~~~~~~ 83 (309)
++.+++ -++|. +|.+|+.+++|.|+-+
T Consensus 21 i~~ar~~~~~d~iIavMSGnFvQRGEPAi~ 50 (389)
T pfam05636 21 LNEAKKLTKADVKIAVMSGNFVQRGEPAII 50 (389)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCHHC
T ss_conf 999998649985999944885218862007
No 121
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=35.84 E-value=27 Score=14.23 Aligned_cols=27 Identities=22% Similarity=0.113 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 899999999996269979999374444
Q gi|255764495|r 50 KEVANLLINDILLHNVDHVSITGDIVN 76 (309)
Q Consensus 50 ~~~l~~~~~~i~~~~pD~vvitGDl~~ 76 (309)
...+..+.+.+.+.+||+|++.||-+.
T Consensus 74 ~~~~~~~~~~l~~~kPD~VlV~GDr~e 100 (363)
T cd03786 74 AGLLIGLEAVLLEEKPDLVLVLGDTNE 100 (363)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf 999999999999729999999488842
No 122
>KOG1099 consensus
Probab=35.65 E-value=27 Score=14.21 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=6.1
Q ss_pred EEEECCCCCCC
Q ss_conf 99993744448
Q gi|255764495|r 67 HVSITGDIVNF 77 (309)
Q Consensus 67 ~vvitGDl~~~ 77 (309)
.+-+-||||..
T Consensus 91 V~qlq~DIT~~ 101 (294)
T KOG1099 91 VIQLQGDITSA 101 (294)
T ss_pred EEEEECCCCCH
T ss_conf 27850455777
No 123
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=35.30 E-value=27 Score=14.17 Aligned_cols=27 Identities=15% Similarity=-0.054 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 308999999999962699799993744
Q gi|255764495|r 48 FSKEVANLLINDILLHNVDHVSITGDI 74 (309)
Q Consensus 48 ~~~~~l~~~~~~i~~~~pD~vvitGDl 74 (309)
.+....+.+.+.+.+.+||+|+..|=-
T Consensus 45 ~f~~s~~~l~~~i~~~~Pd~Vi~~GqA 71 (222)
T PRK13195 45 TFFESIAAAQQAIAEIEPALVIMLGEY 71 (222)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 477689999999998799999992356
No 124
>PRK09275 aspartate aminotransferase; Provisional
Probab=34.35 E-value=28 Score=14.07 Aligned_cols=49 Identities=14% Similarity=0.235 Sum_probs=23.2
Q ss_pred HHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 9985243369708999837688876431101279789999998749819999
Q gi|255764495|r 177 KLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILH 228 (309)
Q Consensus 177 ~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~ 228 (309)
+.+++.+++. ...+++= +|..+++... .-...+++.+++++.+.++++-
T Consensus 236 ~EleKL~DP~-IKAlf~V-NPsNP~S~~l-s~e~l~~i~~IV~~~nPdLmIi 284 (531)
T PRK09275 236 KELEKLRDPS-IKALFVV-NPSNPPSVAM-SDESLEKIADIVKEDRPDLMII 284 (531)
T ss_pred HHHHHHCCCC-CEEEEEE-CCCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9998744977-1189998-9999866656-9999999999997429987999
No 125
>KOG0092 consensus
Probab=34.20 E-value=28 Score=14.06 Aligned_cols=42 Identities=14% Similarity=0.391 Sum_probs=27.4
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCC---CCCEEEEECCCC
Q ss_conf 699799993744448998999999999986189---971899945884
Q gi|255764495|r 63 HNVDHVSITGDIVNFTCNREIFTSTHWLRSIGN---PHDISIVPGNHD 107 (309)
Q Consensus 63 ~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~---~~~v~~v~GNHD 107 (309)
.++++.++.=|+++ .+.|..++.|+.+|.. |--++++.||-=
T Consensus 76 RgA~AAivvYDit~---~~SF~~aK~WvkeL~~~~~~~~vialvGNK~ 120 (200)
T KOG0092 76 RGANAAIVVYDITD---EESFEKAKNWVKELQRQASPNIVIALVGNKA 120 (200)
T ss_pred CCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 47767999985566---7899999999999986279875999832516
No 126
>cd02172 RfaE_N RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=34.12 E-value=28 Score=14.05 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=9.0
Q ss_pred HHHHHCCCEEEEECCCC
Q ss_conf 99987498199998767
Q gi|255764495|r 216 KMIWHEGADLILHGHTH 232 (309)
Q Consensus 216 ~~l~~~~v~lvl~GH~H 232 (309)
+++....+++++.|..-
T Consensus 81 ~~i~~~kpdi~v~G~Dy 97 (143)
T cd02172 81 ELIDALQPDIYVKGGDY 97 (143)
T ss_pred HHHHHHCCEEEEECCCC
T ss_conf 99987198699989864
No 127
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=32.88 E-value=30 Score=13.92 Aligned_cols=50 Identities=12% Similarity=0.049 Sum_probs=32.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHCC--CCEEEECCCCCCCCCHHH--HHHHHHHHHH
Q ss_conf 0012330899999999996269--979999374444899899--9999999986
Q gi|255764495|r 43 NRKKYFSKEVANLLINDILLHN--VDHVSITGDIVNFTCNRE--IFTSTHWLRS 92 (309)
Q Consensus 43 ~~~~~~~~~~l~~~~~~i~~~~--pD~vvitGDl~~~~~~~~--~~~~~~~~~~ 92 (309)
+...+..+..+++.++.+..++ ..-+++.|||.+.|..++ ++...+++..
T Consensus 338 dDsYNAnP~Sm~aALdtL~~~~~~~RrI~ILgDMlElG~~~~~ly~~Vg~l~~~ 391 (824)
T PRK11930 338 NDSYNSDLASLDIALDFLERRKQSKKKTLILSDILQSGQSPEELYRKVAQLISS 391 (824)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHH
T ss_conf 566669989999999999740357856999877443287607899999999997
No 128
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=32.02 E-value=31 Score=13.83 Aligned_cols=11 Identities=9% Similarity=0.066 Sum_probs=5.3
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999626
Q gi|255764495|r 53 ANLLINDILLH 63 (309)
Q Consensus 53 l~~~~~~i~~~ 63 (309)
++++++.+...
T Consensus 15 l~aii~a~~~~ 25 (200)
T PRK05647 15 LQAIIDACAAG 25 (200)
T ss_pred HHHHHHHHHCC
T ss_conf 99999998759
No 129
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=31.76 E-value=31 Score=13.80 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 899999999998524336970899983768
Q gi|255764495|r 168 GQEQAHATSKLLRKANKKGFFRIIMMHHPP 197 (309)
Q Consensus 168 ~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp 197 (309)
++....++.+.+++...++..+|++.|+|.
T Consensus 158 D~~~~~~v~~~i~~~~~~g~tiIi~tH~p~ 187 (206)
T PRK13539 158 DSASQALFAELIRAHLAQGGIVIAATHIPL 187 (206)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 999999999999999958999999938988
No 130
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain; InterPro: IPR012821 Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by IPR012822 from INTERPRO..
Probab=31.39 E-value=24 Score=14.53 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHH----CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 8999999999962----699799993744448998999999999986189971
Q gi|255764495|r 50 KEVANLLINDILL----HNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHD 98 (309)
Q Consensus 50 ~~~l~~~~~~i~~----~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~ 98 (309)
...|..+++.++. .+.-|=|.|| +..+.|...++++..|.|
T Consensus 15 ~~gLA~f~~~L~si~~~~~~gfGi~TG--------R~v~~A~~~~~k~~lP~P 59 (241)
T TIGR02471 15 DEGLAEFVELLRSITSGKAVGFGIATG--------RSVESALSVLKKLNLPSP 59 (241)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCC--------CCHHHHHHHHHHCCCCCC
T ss_conf 678999999998865054302320135--------477899999997079786
No 131
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.16 E-value=32 Score=13.74 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=8.0
Q ss_pred HHHHHHHCCCEEEE
Q ss_conf 99999874981999
Q gi|255764495|r 214 FQKMIWHEGADLIL 227 (309)
Q Consensus 214 l~~~l~~~~v~lvl 227 (309)
+..+++.+..++|+
T Consensus 231 v~~~~~~f~Pdlvi 244 (340)
T COG0123 231 VLPLLEEFKPDLVI 244 (340)
T ss_pred HHHHHHHCCCCEEE
T ss_conf 89999850998899
No 132
>pfam05582 Peptidase_U57 YabG peptidase U57. YabG is a protease involved in the proteolysis and maturation of SpoIVA and YrbA proteins, conserved with the cortex and/or coat assembly by Bacillus subtilis.
Probab=30.42 E-value=33 Score=13.66 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 9999999998524336
Q gi|255764495|r 170 EQAHATSKLLRKANKK 185 (309)
Q Consensus 170 ~q~~~l~~~L~~~~~~ 185 (309)
+|-..+.+.|++.+++
T Consensus 141 eqP~~i~~Ll~~~~PD 156 (287)
T pfam05582 141 EQPEKIESLLEKYRPD 156 (287)
T ss_pred HCHHHHHHHHHHHCCC
T ss_conf 2529999999872899
No 133
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=29.89 E-value=33 Score=13.60 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=39.3
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 00012330899999999996269979999-37444489989999999999861899718999458
Q gi|255764495|r 42 FNRKKYFSKEVANLLINDILLHNVDHVSI-TGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGN 105 (309)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~i~~~~pD~vvi-tGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GN 105 (309)
..|.+....+-++++++.+.+.+.|.+|+ .||-++.. ...+.+.+.+-..+..|.-||=-
T Consensus 144 s~r~ki~t~e~~~~~~~t~~~l~LdgLviiGGd~sntn----Aa~LAEyf~~~~~~t~VIGvPkT 204 (557)
T PRK07085 144 SGRTKIETEEQKEACLQTVKKLKLDGLVIIGGDDSNTN----AAILAEYFAKHNCKTQVIGVPKT 204 (557)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHH----HHHHHHHHHHHCCCEEEEECCCC
T ss_conf 68654589999999999999859987999798872163----89999999982998379933521
No 134
>pfam08497 Radical_SAM_N Radical SAM N-terminal. This domain tends to occur to the N-terminus of the pfam04055 domain in hypothetical bacterial proteins.
Probab=28.77 E-value=35 Score=13.47 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=25.1
Q ss_pred CCCCEEEECCCCC-CCCCHHHHHHHHHHHH---------------------HHCCCCCEE-EEECCCCCCCC
Q ss_conf 6997999937444-4899899999999998---------------------618997189-99458842222
Q gi|255764495|r 63 HNVDHVSITGDIV-NFTCNREIFTSTHWLR---------------------SIGNPHDIS-IVPGNHDAYIS 111 (309)
Q Consensus 63 ~~pD~vvitGDl~-~~~~~~~~~~~~~~~~---------------------~l~~~~~v~-~v~GNHD~~~~ 111 (309)
..+|+|++|||-. ++.+=. ......+++ .|+.|.-++ +..||-|.+..
T Consensus 15 d~lDvilVtGDAYVDHPsFG-~AiIgR~Le~~GyrVgIIaQPdw~~~~df~~lG~PrLffgVsaGn~DSMVn 85 (298)
T pfam08497 15 DQLDVILVTGDAYVDHPSFG-MAIIGRVLEAQGFRVGIIAQPDWRSDEDFKRLGRPRLFFGVTAGNMDSMVN 85 (298)
T ss_pred CCCCEEEEECCCCCCCCCHH-HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCEEEEECCCCHHHHHH
T ss_conf 75788999476225685306-899999999869659897189989847899729984798863664888887
No 135
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=28.68 E-value=35 Score=13.46 Aligned_cols=28 Identities=21% Similarity=0.138 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 3089999999999626997999937444
Q gi|255764495|r 48 FSKEVANLLINDILLHNVDHVSITGDIV 75 (309)
Q Consensus 48 ~~~~~l~~~~~~i~~~~pD~vvitGDl~ 75 (309)
.+.+..+.+.+.+.+.+||+|+..|---
T Consensus 44 ~f~~s~~~l~~~i~~~qPd~vl~iG~A~ 71 (207)
T COG2039 44 VFKKSIDALVQAIAEVQPDLVLAIGQAG 71 (207)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 1888999999999851998699831468
No 136
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=28.40 E-value=35 Score=13.43 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHCCCCEEEECCC
Q ss_conf 9999999996269979999374
Q gi|255764495|r 52 VANLLINDILLHNVDHVSITGD 73 (309)
Q Consensus 52 ~l~~~~~~i~~~~pD~vvitGD 73 (309)
.+|.=.+.|++.+||+|++.|=
T Consensus 106 lfEPD~Eai~a~kPdLIIiggR 127 (320)
T COG4607 106 LFEPDYEAIAAAKPDLIIIGGR 127 (320)
T ss_pred CCCCCHHHHHHCCCCEEEECCH
T ss_conf 3587889997449988997747
No 137
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=28.28 E-value=35 Score=13.42 Aligned_cols=28 Identities=7% Similarity=-0.071 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 3089999999999626997999937444
Q gi|255764495|r 48 FSKEVANLLINDILLHNVDHVSITGDIV 75 (309)
Q Consensus 48 ~~~~~l~~~~~~i~~~~pD~vvitGDl~ 75 (309)
.+....+.+.+.+.+.+||+|+..|=-.
T Consensus 44 ~~~~~~~~l~~~i~~~~Pd~vi~lG~a~ 71 (201)
T PRK13193 44 EYDKIEDMIVTKIREYKPILTLGIGLAP 71 (201)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 0888999999999851996899805678
No 138
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=27.58 E-value=36 Score=13.34 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=7.0
Q ss_pred HHHHHHHCCCCEEEECCC
Q ss_conf 999996269979999374
Q gi|255764495|r 56 LINDILLHNVDHVSITGD 73 (309)
Q Consensus 56 ~~~~i~~~~pD~vvitGD 73 (309)
+++.+.+.+||+|+++|=
T Consensus 71 l~~~l~~~~~dlvvLAGy 88 (200)
T COG0299 71 LVEALDEYGPDLVVLAGY 88 (200)
T ss_pred HHHHHHHCCCCEEEECCH
T ss_conf 999998529999998664
No 139
>pfam06925 MGDG_synth Monogalactosyldiacylglycerol (MGDG) synthase. This family represents a conserved region of approximately 180 residues within plant and bacterial monogalactosyldiacylglycerol (MGDG) synthase (EC:2.4.1.46). In Arabidopsis, there are two types of MGDG synthase which differ in their N-terminal portion: type A and type B.
Probab=27.47 E-value=37 Score=13.33 Aligned_cols=28 Identities=11% Similarity=-0.152 Sum_probs=11.5
Q ss_pred HHHHHHHHHCCCC-EEEECCCCCCCCCHH
Q ss_conf 9999999626997-999937444489989
Q gi|255764495|r 54 NLLINDILLHNVD-HVSITGDIVNFTCNR 81 (309)
Q Consensus 54 ~~~~~~i~~~~pD-~vvitGDl~~~~~~~ 81 (309)
+++.+.++.+.+| .=+.-=|+.....+.
T Consensus 6 ~Al~ea~~~~~~~~~ev~i~D~~~~~~p~ 34 (169)
T pfam06925 6 EALREAFNNEFGDEYQVVVHDSLKELNPF 34 (169)
T ss_pred HHHHHHHHHHCCCCCEEEEEEHHHHCCHH
T ss_conf 99999998566998779998638853844
No 140
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=27.20 E-value=37 Score=13.29 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=24.7
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 899999987498199998767532478716998689999576
Q gi|255764495|r 212 QRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIAS 253 (309)
Q Consensus 212 ~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s 253 (309)
+-+.+++.+.+..++++|=..+|-.-..-+.-+..++++-|+
T Consensus 250 D~v~~~l~~lg~~~~f~~v~ikPGkp~~~g~~~~~~v~gLPG 291 (394)
T cd00887 250 DFVKEVLEELGGEVLFHGVAMKPGKPLAFGRLGGKPVFGLPG 291 (394)
T ss_pred CHHHHHHHHCCCEEEEEEEECCCCCCEEEEEECCEEEEECCC
T ss_conf 339999997799899977413577622899989846996688
No 141
>TIGR00195 exoDNase_III exodeoxyribonuclease III; InterPro: IPR000097 DNA damaging agents such as the antitumor drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity. This family contains members of AP endonuclease family 1. Except for Rrp1 and arp, these enzymes are proteins of about 300 amino-acid residues. Rrp1 and arp both contain additional and unrelated sequences in their N-terminal section (about 400 residues for Rrp1 and 270 for arp). The proteins contain glutamate which has been shown , in the Escherichia coli enzyme to bind a divalent metal ion such as magnesium or manganese.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0006281 DNA repair, 0005622 intracellular.
Probab=26.82 E-value=38 Score=13.25 Aligned_cols=21 Identities=5% Similarity=-0.008 Sum_probs=15.5
Q ss_pred HHHHHHH--HHHHHHCCCCEEEE
Q ss_conf 8999999--99996269979999
Q gi|255764495|r 50 KEVANLL--INDILLHNVDHVSI 70 (309)
Q Consensus 50 ~~~l~~~--~~~i~~~~pD~vvi 70 (309)
++.+..+ ++.+.+.+||.|.+
T Consensus 12 RAr~~~~dFl~~~~~~~pDilCl 34 (281)
T TIGR00195 12 RARLHKGDFLDWLKENKPDILCL 34 (281)
T ss_pred HHHCCHHHHHHHHCCCCCCEEEC
T ss_conf 53300435888842389958732
No 142
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=26.75 E-value=38 Score=13.24 Aligned_cols=56 Identities=20% Similarity=0.129 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEE-ECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 089999999999626997999-937444489989999999999861899718999458842
Q gi|255764495|r 49 SKEVANLLINDILLHNVDHVS-ITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDA 108 (309)
Q Consensus 49 ~~~~l~~~~~~i~~~~pD~vv-itGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~ 108 (309)
..+..+.+++.+++.+.|.++ +.||=+ -.....+.+....-....+|..||+-=|-
T Consensus 77 ~~~~~~~~~~~l~~~~Id~Li~IGGdgS----~~~a~~L~~~~~~~~~~i~vvgIPkTIDN 133 (338)
T cd00363 77 TEEGRAKAAENLKKHGIDALVVIGGDGS----YTGADLLTEEWPSKYQGFNVIGLPGTIDN 133 (338)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCHH----HHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 8677899999999829998999789269----99999999988852899518984103478
No 143
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=26.14 E-value=39 Score=13.17 Aligned_cols=27 Identities=26% Similarity=0.142 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 308999999999962699799993744
Q gi|255764495|r 48 FSKEVANLLINDILLHNVDHVSITGDI 74 (309)
Q Consensus 48 ~~~~~l~~~~~~i~~~~pD~vvitGDl 74 (309)
.+....+.+.+.+.+.+||+|+..|=-
T Consensus 46 ~f~~~~~~l~~~i~~~~Pd~vl~~G~A 72 (212)
T PRK13196 46 EPHAAAAALRALLEEHDPDAVLLTGLA 72 (212)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 288899999999997199989992567
No 144
>TIGR02082 metH methionine synthase; InterPro: IPR011822 Vitamin B12 dependent methionine synthase 2.1.1.13 from EC (5-methyltetrahydrofolate--homocysteine S-methyltransferase) catalyses the conversion of 5-methyltetrahydrofolate and L-homocysteine to tetrahydrofolate and L-methionine as the final step in de novo methionine biosynthesis. The enzyme requires methylcobalamin as a cofactor. In humans, defects in this enzyme are the cause of autosomal recessive inherited methylcobalamin deficiency (CBLG), which causes mental retardation, macrocytic anemia and homocystinuria. Mild deficiencies in activity may result in mild hyperhomocysteinemia, and mutations in the enzyme may be involved in tumorigenesis. Vitamin B12 dependent methionine synthase is found in prokaryotes and eukaryotes, but in prokaryotes the cofactor is cobalamin. This enzyme is a large protein composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and tetrahydrofolate , the third module binds the B12 cofactor , and the C-terminal module (activation domain) binds S-adenosylmethionine. The activation domain is essential for the reductive activation of the enzyme. During the catalytic cycle, the highly reactive cob(I)alamin intermediate can be oxidised to produce an inactive cob(II)alamin enzyme; the enzyme is then reactivated via reductive methylation by the activation domain . The activation domain adopts an unusual alpha/beta fold.Recent studies suggest that this enzyme exists as an ensemble of conformations with equilibria dependent on the oxidation and methylation state of the cobalamin and on the concentrations of substrates or products .; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0050897 cobalt ion binding, 0009086 methionine biosynthetic process.
Probab=26.12 E-value=39 Score=13.17 Aligned_cols=74 Identities=15% Similarity=0.186 Sum_probs=33.5
Q ss_pred EECCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC--CCCC--CCCCCCC---HHHH
Q ss_conf 9719879998328888887554760089999999999852433697089998376888--7643--1101279---7899
Q gi|255764495|r 142 RIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVL--DTSS--LYNRMFG---IQRF 214 (309)
Q Consensus 142 ~~~~~~~~i~l~s~~~~~~~~~~g~~~~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~--~~~~--~~~~~~~---~~~l 214 (309)
....++-.+||||+.. ++.+...-+.|.+ .. . +.|.=||=-. .+.. -.+.+.. ++.+
T Consensus 224 l~~~~~~~iGLNCAlG-----------pdel~~h~~~Ls~---~~-~-~~Vs~~PNAGLPn~~G~~AeY~l~P~~~A~~l 287 (1265)
T TIGR02082 224 LEHAEILIIGLNCALG-----------PDELRPHVKELSE---HA-E-AYVSVHPNAGLPNAFGKQAEYDLTPDELAKAL 287 (1265)
T ss_pred HCCCCCCEECCCCCCC-----------HHHHHHHHHHHHH---HC-C-EEEEEECCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 5468730241231147-----------7789999999870---08-8-13888337888100477768755578999999
Q ss_pred HHHHHHCCCEEE--EECCC
Q ss_conf 999987498199--99876
Q gi|255764495|r 215 QKMIWHEGADLI--LHGHT 231 (309)
Q Consensus 215 ~~~l~~~~v~lv--l~GH~ 231 (309)
.+.+.+..+.+| =||=+
T Consensus 288 ~~fa~eg~lniVGGCCGTT 306 (1265)
T TIGR02082 288 KDFAEEGGLNIVGGCCGTT 306 (1265)
T ss_pred HHHHHHCCEEEEECCCCCC
T ss_conf 9999863903774268996
No 145
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=26.04 E-value=39 Score=13.16 Aligned_cols=16 Identities=6% Similarity=0.071 Sum_probs=6.7
Q ss_pred CHHHHHHHHHHHHHCC
Q ss_conf 0899999999996269
Q gi|255764495|r 49 SKEVANLLINDILLHN 64 (309)
Q Consensus 49 ~~~~l~~~~~~i~~~~ 64 (309)
..+++..+++.+...+
T Consensus 31 G~dl~~~ll~~~~~~~ 46 (171)
T cd06533 31 GSDLMPALLELAAQKG 46 (171)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 1999999999998649
No 146
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=26.03 E-value=39 Score=13.16 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=11.7
Q ss_pred HHHHHHHHHCCCCEEEECCCC
Q ss_conf 999999962699799993744
Q gi|255764495|r 54 NLLINDILLHNVDHVSITGDI 74 (309)
Q Consensus 54 ~~~~~~i~~~~pD~vvitGDl 74 (309)
+.+++.+++.+||.|-++.=.
T Consensus 41 ~~i~~~i~~~~pdiVgiS~~~ 61 (121)
T pfam02310 41 EDIVEAIRAENPDVVGLSALM 61 (121)
T ss_pred HHHHHHHHHCCCCEEEEECCC
T ss_conf 999999998099999995232
No 147
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=25.99 E-value=39 Score=13.15 Aligned_cols=35 Identities=11% Similarity=0.081 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf 01233089999999999626997999937444489
Q gi|255764495|r 44 RKKYFSKEVANLLINDILLHNVDHVSITGDIVNFT 78 (309)
Q Consensus 44 ~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~ 78 (309)
....+....+++..+..++.+.+.++++||-....
T Consensus 73 ~~N~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~s 107 (235)
T COG2949 73 PPNRYYTYRIDAAIALYKAGKVNYLLLSGDNATVS 107 (235)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
T ss_conf 95576899999999998647704999816877534
No 148
>pfam08981 consensus
Probab=25.75 E-value=39 Score=13.13 Aligned_cols=26 Identities=12% Similarity=0.173 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 23308999999999962699799993
Q gi|255764495|r 46 KYFSKEVANLLINDILLHNVDHVSIT 71 (309)
Q Consensus 46 ~~~~~~~l~~~~~~i~~~~pD~vvit 71 (309)
.+...+.++.+++.+.+.+..-||++
T Consensus 7 ~~NT~~tl~~a~~ra~e~gI~~iVvA 32 (181)
T pfam08981 7 KENTEDTLELAAERAKELGIKHIVVA 32 (181)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 21389999999999997699769998
No 149
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=25.75 E-value=39 Score=13.13 Aligned_cols=48 Identities=4% Similarity=0.011 Sum_probs=27.6
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 9999999962699799993744448998999999999986189971899945884
Q gi|255764495|r 53 ANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHD 107 (309)
Q Consensus 53 l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD 107 (309)
.+.+++.+....||.+++-=++-+. .-+ +.++.+....++.++.++-|
T Consensus 36 ~~~~l~~~~~~~~dvvllD~~mp~~---~g~----~~~~~l~~~~~vivls~~~~ 83 (196)
T PRK10360 36 GREALAGLPGRGVQVCICDISMPDI---SGL----ELLSQLPKGMATIMLSVHDS 83 (196)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCC---CCH----HHHHHHHCCCCEEEEEECCC
T ss_conf 9999998874499999987887886---207----79999843874899973075
No 150
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=25.70 E-value=39 Score=13.12 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=11.2
Q ss_pred HHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 9999998524336970899983
Q gi|255764495|r 173 HATSKLLRKANKKGFFRIIMMH 194 (309)
Q Consensus 173 ~~l~~~L~~~~~~~~~~iv~~H 194 (309)
+.|+..|+.++..+-..++++-
T Consensus 117 emLkl~L~~ar~lgi~~Vlvtc 138 (174)
T COG3981 117 EMLKLALEKARELGIKKVLVTC 138 (174)
T ss_pred HHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9999999999984997699984
No 151
>pfam02698 DUF218 DUF218 domain. This large family of proteins contains several highly conserved charged amino acids, suggesting this may be an enzymatic domain (Bateman A pers. obs). The family includes SanA, which is involved in Vancomycin resistance. This protein may be involved in murein synthesis.
Probab=25.42 E-value=40 Score=13.09 Aligned_cols=47 Identities=11% Similarity=0.021 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999996269979999374444899899999999998618997
Q gi|255764495|r 51 EVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPH 97 (309)
Q Consensus 51 ~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~ 97 (309)
..++..++..++.....|+++|+........|.+...+++..+..|.
T Consensus 17 ~R~~~a~~l~~~g~~~~ii~sGg~~~~~~~~ea~~~~~~l~~~gvp~ 63 (148)
T pfam02698 17 ARLDAAAELYRAGPAPRIIVSGGAGGGEPVSEAEVMRRYLVELGVPA 63 (148)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCH
T ss_conf 99999999998099988998489888888789999999999869899
No 152
>TIGR02685 pter_reduc_Leis pteridine reductase; InterPro: IPR014058 Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family..
Probab=25.29 E-value=40 Score=13.07 Aligned_cols=33 Identities=18% Similarity=0.113 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHHHHHCCC-CEEEECCCCCCCC
Q ss_conf 23308999999999962699-7999937444489
Q gi|255764495|r 46 KYFSKEVANLLINDILLHNV-DHVSITGDIVNFT 78 (309)
Q Consensus 46 ~~~~~~~l~~~~~~i~~~~p-D~vvitGDl~~~~ 78 (309)
.+.....-..|.+.+|+++| -+|++-|||++..
T Consensus 32 Yh~Sa~aA~~LaaeLNa~R~nsAv~~qaDLsns~ 65 (283)
T TIGR02685 32 YHRSAAAASTLAAELNAERANSAVVCQADLSNSA 65 (283)
T ss_pred ECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 0245678999999973407897699961313100
No 153
>TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828 6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=25.28 E-value=40 Score=13.07 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHCCCC-EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 089999999999626997-999937444489989999999999861899718999458842
Q gi|255764495|r 49 SKEVANLLINDILLHNVD-HVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDA 108 (309)
Q Consensus 49 ~~~~l~~~~~~i~~~~pD-~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~ 108 (309)
.++.-+..++.+++.+.| +||+-|| -.|.=|..+.++- ..||.-+||==|-
T Consensus 76 ~~evR~kA~~nLK~~GI~~LVViGGD-------GSy~GA~~L~~~g--g~~~iGlPGTIDN 127 (302)
T TIGR02482 76 TEEVREKAVENLKKLGIEALVVIGGD-------GSYTGAQKLYEEG--GIPVIGLPGTIDN 127 (302)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEECCC-------HHHHHHHHHHHHC--CCCEEEECCCCCC
T ss_conf 87899999999887488668998684-------4068899999717--9847874585025
No 154
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=25.04 E-value=40 Score=13.04 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 30899999999996269979999374
Q gi|255764495|r 48 FSKEVANLLINDILLHNVDHVSITGD 73 (309)
Q Consensus 48 ~~~~~l~~~~~~i~~~~pD~vvitGD 73 (309)
...+.++.+-+.+++.+||.||+-|+
T Consensus 28 ~~~~a~~~~~~~l~~~~PDvvVvi~~ 53 (271)
T cd07359 28 AVFAAFARIRDRLEAARPDVVVVVGN 53 (271)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 99999999999999839899999836
No 155
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=25.00 E-value=40 Score=13.04 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHCCCCEEEECCC-CCCCC
Q ss_conf 99999999996269979999374-44489
Q gi|255764495|r 51 EVANLLINDILLHNVDHVSITGD-IVNFT 78 (309)
Q Consensus 51 ~~l~~~~~~i~~~~pD~vvitGD-l~~~~ 78 (309)
...++.++..++..|| ||+.|| +|...
T Consensus 19 ~~h~~~~~~~~~~~~~-ivf~GdSit~~W 46 (214)
T cd01820 19 SRHERFVAEAKQKEPD-VVFIGDSITQNW 46 (214)
T ss_pred HHHHHHHHHHHCCCCC-EEEECCHHHHHH
T ss_conf 9999999971028999-999816587512
No 156
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=24.58 E-value=41 Score=12.98 Aligned_cols=12 Identities=17% Similarity=-0.044 Sum_probs=5.1
Q ss_pred CEEEEEECCCCC
Q ss_conf 689999576235
Q gi|255764495|r 245 LIPVVGIASASQ 256 (309)
Q Consensus 245 ~~~~~~~~s~~~ 256 (309)
.+++..+|+...
T Consensus 330 ~~~VAVAGGI~~ 341 (392)
T PRK13307 330 KILVAVAGGVRV 341 (392)
T ss_pred CEEEEEECCCCH
T ss_conf 805999778888
No 157
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=24.52 E-value=41 Score=12.98 Aligned_cols=48 Identities=13% Similarity=0.028 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 089999999999626997999937444489989999999999861899
Q gi|255764495|r 49 SKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNP 96 (309)
Q Consensus 49 ~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~ 96 (309)
....++..++..++.....|+++|+........|.+...+++.....+
T Consensus 19 ~~~R~~~a~~L~~~~~~~~ii~sGg~~~~~~~~Ea~~~~~~l~~~gv~ 66 (150)
T cd06259 19 LAERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVP 66 (150)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 999999999999819998899958879999889999999999985999
No 158
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=24.40 E-value=42 Score=12.96 Aligned_cols=12 Identities=33% Similarity=0.434 Sum_probs=6.3
Q ss_pred HHHCCCCEEEEC
Q ss_conf 962699799993
Q gi|255764495|r 60 ILLHNVDHVSIT 71 (309)
Q Consensus 60 i~~~~pD~vvit 71 (309)
+...+||.||++
T Consensus 38 ~~~~~~~giiLS 49 (184)
T cd01743 38 LELLNPDAIVIS 49 (184)
T ss_pred HHHCCCCEEEEC
T ss_conf 973297999999
No 159
>PTZ00099 rab6; Provisional
Probab=24.35 E-value=42 Score=12.96 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=29.5
Q ss_pred HHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH----CCCCCEEEEECCCCC
Q ss_conf 626997999937444489989999999999861----899718999458842
Q gi|255764495|r 61 LLHNVDHVSITGDIVNFTCNREIFTSTHWLRSI----GNPHDISIVPGNHDA 108 (309)
Q Consensus 61 ~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l----~~~~~v~~v~GNHD~ 108 (309)
--.+++.+++.-|+++. ..|..+..|++.+ ....+ .++.||-=.
T Consensus 49 y~r~a~~~ilVyDit~~---~SF~~l~~W~~~i~~~~~~~~~-iiLVGNK~D 96 (176)
T PTZ00099 49 YIRDSAAAIVVYDITNR---QSFENTTKWIQDILNERGKDVI-IALVGNKTD 96 (176)
T ss_pred HHCCCCEEEEEECCCHH---HHHHHHHHHHHHHHHHCCCCCC-EEEEEECCC
T ss_conf 70798679998504207---7899999999999985388774-399985565
No 160
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=24.33 E-value=42 Score=12.95 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=18.6
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf 99999996269979999374444899
Q gi|255764495|r 54 NLLINDILLHNVDHVSITGDIVNFTC 79 (309)
Q Consensus 54 ~~~~~~i~~~~pD~vvitGDl~~~~~ 79 (309)
...+.++.+..++.+++++|+...+.
T Consensus 4 ~~~l~~~~~~d~~vv~l~~Dl~~~~~ 29 (156)
T cd07033 4 GEALLELAKKDPRIVALSADLGGSTG 29 (156)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 99999999779799999687678877
No 161
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840 This enzyme is a member of the radical-SAM family. It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD..
Probab=24.25 E-value=42 Score=12.94 Aligned_cols=44 Identities=20% Similarity=0.057 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHHCCC--CEEEECCCCCCCCCHHHHHH-HHHHHHHHC
Q ss_conf 23308999999999962699--79999374444899899999-999998618
Q gi|255764495|r 46 KYFSKEVANLLINDILLHNV--DHVSITGDIVNFTCNREIFT-STHWLRSIG 94 (309)
Q Consensus 46 ~~~~~~~l~~~~~~i~~~~p--D~vvitGDl~~~~~~~~~~~-~~~~~~~l~ 94 (309)
.....--++.+++.+++.+. |.||||| |.|--++. +..++.++.
T Consensus 43 ~~~~~~~~e~~~~~L~~R~~ll~gVVitG-----GEptlQ~~eL~d~~~~v~ 89 (220)
T TIGR02495 43 KGSGEIELEELLEFLRRRQGLLDGVVITG-----GEPTLQAGELGDFLREVR 89 (220)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEEEEC-----CCHHHHHHHHHHHHHHHH
T ss_conf 05761027779999873134210578728-----753236777899999999
No 162
>smart00594 UAS UAS domain.
Probab=24.18 E-value=42 Score=12.94 Aligned_cols=54 Identities=9% Similarity=0.157 Sum_probs=28.6
Q ss_pred HHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 999852433697089998376888764311012797899999987498199998767
Q gi|255764495|r 176 SKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTH 232 (309)
Q Consensus 176 ~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H 232 (309)
.+.++.++...++.+|..|.+-..........+...+.+.+.+.+ ..|+.|...
T Consensus 17 ~~A~~~Ak~~~K~LlVylh~~~~~~~~~f~Rdvl~~~~V~~~i~~---nfVfw~~d~ 70 (122)
T smart00594 17 EAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDV 70 (122)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHH---CEEEEEECC
T ss_conf 999999985067269999378854389999986278889999973---488987516
No 163
>pfam10686 DUF2493 Protein of unknown function (DUF2493). Members of this family are all Proteobacteria. The function is not known.
Probab=23.93 E-value=42 Score=12.90 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 899999999996269979999374444899899999999998618
Q gi|255764495|r 50 KEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIG 94 (309)
Q Consensus 50 ~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~ 94 (309)
...+...+..+.++.||.+++.|--.. | .-..+.+|-++..
T Consensus 17 ~~~i~~~Ld~~~~~~pd~vlihGG~~k-G---ad~lA~~WA~~~g 57 (71)
T pfam10686 17 HRLIWDALDKVHARHPDMVLLHGGAPK-G---AERIAARWARRRG 57 (71)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCC-C---HHHHHHHHHHHCC
T ss_conf 999999999999868987999779863-3---7999999999869
No 164
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain; InterPro: IPR005974 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model IPR005972 from INTERPRO.; GO: 0016163 nitrogenase activity, 0051536 iron-sulfur cluster binding, 0009399 nitrogen fixation.
Probab=23.80 E-value=43 Score=12.89 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCE
Q ss_conf 9789999998749819999876753247871699868999957623577888877854
Q gi|255764495|r 210 GIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASY 267 (309)
Q Consensus 210 ~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y 267 (309)
|.=++.|+|..+.+|++|+|---..-...+. +|++..-| ..+++..||
T Consensus 394 NeLE~~Eiie~~kPDiIltG~r~gelakKl~-----vPy~~~H~-----Y~NGPY~GF 441 (468)
T TIGR01284 394 NELELLEIIELLKPDIILTGKREGELAKKLR-----VPYINIHS-----YHNGPYIGF 441 (468)
T ss_pred CCCHHHHHHHHHCCCEEEECCCCCEEEEEEC-----CCEEEECC-----CCCCCCCCC
T ss_conf 7503888986418888971786650476530-----67674015-----347784550
No 165
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=23.78 E-value=43 Score=12.89 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=35.2
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 9999962699799993744448998999999999986189971899945884222
Q gi|255764495|r 56 LINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYI 110 (309)
Q Consensus 56 ~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v~GNHD~~~ 110 (309)
+.+.+.+.+.|+|++.|=.-.. ..++.....+++...+.||..=|||.....
T Consensus 17 l~~~~~~sgtDai~VGGS~~~~---~~~~~~v~~ik~~~~~~PvilfPg~~~~is 68 (219)
T cd02812 17 IAKLAEESGTDAIMVGGSDGVS---STLDNVVRLIKRIRRPVPVILFPSNPEAVS 68 (219)
T ss_pred HHHHHHHHCCCEEEECCCCCCH---HHHHHHHHHHHHHCCCCCEEEECCCHHHCC
T ss_conf 9999997699999993755744---779999999997378999899579866568
No 166
>TIGR01264 tyr_amTase_E tyrosine aminotransferase; InterPro: IPR005957 This entry describes tyrosine aminotransferase (2.6.1.5 from EC) as found in animals and Trypanosoma cruzi (Euglenozoa). It is the first enzyme of a pathway of tyrosine degradation via homogentisate. L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate.; GO: 0004838 tyrosine transaminase activity, 0030170 pyridoxal phosphate binding, 0009072 aromatic amino acid family metabolic process.
Probab=23.73 E-value=43 Score=12.88 Aligned_cols=104 Identities=10% Similarity=0.088 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCC---------EEEEECCCCCCEEEEE
Q ss_conf 9999999999852433697089998376888764311012797899999987498---------1999987675324787
Q gi|255764495|r 169 QEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGA---------DLILHGHTHLNSLHWI 239 (309)
Q Consensus 169 ~~q~~~l~~~L~~~~~~~~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v---------~lvl~GH~H~~~~~~~ 239 (309)
+++.+.=-.+|++..++++..|++.- |--+-++... -..-+++..+.+++.+ ++|+.|-.=...+..+
T Consensus 160 d~~w~~DL~~l~~LiDd~T~~l~vnN-PSNPcGSvF~--~~Hl~~l~a~A~~~~Lpi~ADEIY~~~VF~GkDPnatF~~l 236 (415)
T TIGR01264 160 DEDWEIDLKQLESLIDDKTKALIVNN-PSNPCGSVFR--REHLEELLALAERLKLPIIADEIYGDMVFKGKDPNATFTPL 236 (415)
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCCCCC--HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 73356648988631256740788837-5778898878--78899999998753872366420256513886786422020
Q ss_pred ECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 1699868999957623577888877854899995389
Q gi|255764495|r 240 KNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKN 276 (309)
Q Consensus 240 ~~~~~~~~~~~~~s~~~~~~~~~~~~~y~li~i~~~~ 276 (309)
..=+..+|++.+++.+.+..-.+++=||=+| .++.+
T Consensus 237 A~L~s~VP~~~cgG~AKr~lVPGWRLGWli~-hd~~~ 272 (415)
T TIGR01264 237 ASLSSKVPILSCGGLAKRWLVPGWRLGWLII-HDRKG 272 (415)
T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCEEE-ECCCC
T ss_conf 2377998868707632002247611024788-87888
No 167
>PRK05670 anthranilate synthase component II; Provisional
Probab=23.66 E-value=43 Score=12.87 Aligned_cols=14 Identities=14% Similarity=0.238 Sum_probs=6.6
Q ss_pred HHHHHCCCCEEEEC
Q ss_conf 99962699799993
Q gi|255764495|r 58 NDILLHNVDHVSIT 71 (309)
Q Consensus 58 ~~i~~~~pD~vvit 71 (309)
+.+.+.+||.|+++
T Consensus 37 ~~i~~~~pdgiiLS 50 (192)
T PRK05670 37 EEIEALAPDAIVLS 50 (192)
T ss_pred HHHHHCCCCEEEEC
T ss_conf 99985098989999
No 168
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=23.29 E-value=44 Score=12.82 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=14.4
Q ss_pred HHHHHHHHHHC-----CCCEEEECCCCC
Q ss_conf 99999999626-----997999937444
Q gi|255764495|r 53 ANLLINDILLH-----NVDHVSITGDIV 75 (309)
Q Consensus 53 l~~~~~~i~~~-----~pD~vvitGDl~ 75 (309)
.+.+++.+.++ ++|+|+--|-+.
T Consensus 52 ~~~i~~~i~e~g~~i~~~dAvvgRGGLL 79 (358)
T COG3426 52 KDAILEFIDEQGYNISKFDAVVGRGGLL 79 (358)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEECCCCC
T ss_conf 9999999997187757740013057644
No 169
>pfam04587 ADP_PFK_GK ADP-specific Phosphofructokinase/Glucokinase conserved region. In archaea a novel type of glycolytic pathway exists that is deviant from the classical Embden-Meyerhof pathway. This pathway utilizes two novel proteins: an ADP-dependent Glucokinase and an ADP-dependent Phosphofructokinase. This conserved region is present at the C-terminal of both these proteins. Interestingly this family contains sequences from higher eukaryotes..
Probab=23.24 E-value=44 Score=12.82 Aligned_cols=54 Identities=9% Similarity=-0.007 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHHC--CCCEEEECCC----C--CCCCCHHH-HHHHHHHHHHHCC--CCCEEE
Q ss_conf 3089999999999626--9979999374----4--44899899-9999999986189--971899
Q gi|255764495|r 48 FSKEVANLLINDILLH--NVDHVSITGD----I--VNFTCNRE-IFTSTHWLRSIGN--PHDISI 101 (309)
Q Consensus 48 ~~~~~l~~~~~~i~~~--~pD~vvitGD----l--~~~~~~~~-~~~~~~~~~~l~~--~~~v~~ 101 (309)
......+.+.+.+.+. +||++|++|= . .+.+..++ ++.+++.+..+.. ..|+.+
T Consensus 191 ~~l~~~e~f~~~l~~~~~~~Dl~vlSGlq~l~~~~~d~~~~~~~l~~~~e~l~~lk~~~~i~iH~ 255 (444)
T pfam04587 191 PRLEIKEELREFLEEIGEQVDLAILSGLQMLTLFYSDGKDAEYYLKRVKEDIKLLKKPKGIKVHL 255 (444)
T ss_pred CCCEEHHHHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 54123298999999744588889996234320347786348999999999999823688986699
No 170
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=23.16 E-value=44 Score=12.81 Aligned_cols=11 Identities=0% Similarity=0.205 Sum_probs=5.3
Q ss_pred EEECCCCCCCC
Q ss_conf 94111427885
Q gi|255764495|r 14 HISDIHLSYSP 24 (309)
Q Consensus 14 hlSDlHlg~~~ 24 (309)
-+.|+-|...+
T Consensus 16 vl~~vs~~i~~ 26 (204)
T PRK13538 16 LFEGLSFTLNA 26 (204)
T ss_pred EEECEEEEECC
T ss_conf 98051779879
No 171
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=22.94 E-value=44 Score=12.78 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=27.6
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHH---CCCCCEEEEECCCC
Q ss_conf 6997999937444489989999999999861---89971899945884
Q gi|255764495|r 63 HNVDHVSITGDIVNFTCNREIFTSTHWLRSI---GNPHDISIVPGNHD 107 (309)
Q Consensus 63 ~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l---~~~~~v~~v~GNHD 107 (309)
.+++.+++.=|+++. ..|+.+..|++++ ....|+ ++.||-=
T Consensus 77 r~a~~~ilvyDvt~~---~Sf~~l~~w~~~i~~~~~~~p~-iLVGNK~ 120 (189)
T cd04121 77 RGAQGIILVYDITNR---WSFDGIDRWIKEIDEHAPGVPK-ILVGNRL 120 (189)
T ss_pred HHCCCEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCCE-EEEEECC
T ss_conf 633704898227988---9999999999999997689878-9961325
No 172
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein; InterPro: IPR014182 Members of this entry form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases. Some current members of this entry carry designations as putative alginate lyase, however none have been characterised as such..
Probab=22.55 E-value=45 Score=12.73 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=28.9
Q ss_pred HHHHCCC-CEEEECCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 9962699-79999374444899899999999998618
Q gi|255764495|r 59 DILLHNV-DHVSITGDIVNFTCNREIFTSTHWLRSIG 94 (309)
Q Consensus 59 ~i~~~~p-D~vvitGDl~~~~~~~~~~~~~~~~~~l~ 94 (309)
.+.--+| |-|.-+|||.-.|+.+||....+.+..-.
T Consensus 78 ~VtLFKpGDeVwYAG~i~RpGsNaEfhLVDERIVG~K 114 (338)
T TIGR02817 78 EVTLFKPGDEVWYAGDITRPGSNAEFHLVDERIVGHK 114 (338)
T ss_pred CCCEECCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 1001027875575433688831468887789983689
No 173
>pfam03841 SelA L-seryl-tRNA selenium transferase.
Probab=22.54 E-value=41 Score=13.02 Aligned_cols=18 Identities=17% Similarity=-0.069 Sum_probs=10.2
Q ss_pred EECHHHHHHHHHHHHHCC
Q ss_conf 008999999999985243
Q gi|255764495|r 166 YFGQEQAHATSKLLRKAN 183 (309)
Q Consensus 166 ~~~~~q~~~l~~~L~~~~ 183 (309)
+.+...+..|+..|+.+.
T Consensus 243 RvDKltLaaLeatL~~Yl 260 (367)
T pfam03841 243 RVDKLTLAALEATLRLYL 260 (367)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 458899999999999984
No 174
>TIGR02845 spore_V_AD stage V sporulation protein AD; InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation ..
Probab=22.12 E-value=46 Score=12.68 Aligned_cols=86 Identities=14% Similarity=0.154 Sum_probs=45.8
Q ss_pred CCCCCCEECHHHHHHHHHHHHHCCCCCC-EEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHC-CCEEEEECCCCCCEEE
Q ss_conf 7554760089999999999852433697-0899983768887643110127978999999874-9819999876753247
Q gi|255764495|r 160 PFSANGYFGQEQAHATSKLLRKANKKGF-FRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHE-GADLILHGHTHLNSLH 237 (309)
Q Consensus 160 ~~~~~g~~~~~q~~~l~~~L~~~~~~~~-~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~-~v~lvl~GH~H~~~~~ 237 (309)
|..-.+-+.|+-.+=++.-|++...... .-++++- -+ .-.+++-++++|++. |++ .|-.+.+--.
T Consensus 195 P~~mG~AMAPAAaDTI~~Hf~dtg~~~~DYDLIvTG-DL---------~rvG~~I~~~LL~e~yg~~---~~~~Y~DCG~ 261 (331)
T TIGR02845 195 PLDMGAAMAPAAADTIEAHFKDTGRSVDDYDLIVTG-DL---------ARVGSEILRKLLKEEYGYD---VTEKYDDCGV 261 (331)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC-CH---------HHHHHHHHHHHHHHHHCCC---CCCEECCCCE
T ss_conf 641135412689999999998707880401367873-30---------0214899999988860875---0001045646
Q ss_pred EEECCCCC-EEEEEECCCCCCC
Q ss_conf 87169986-8999957623577
Q gi|255764495|r 238 WIKNEKKL-IPVVGIASASQKV 258 (309)
Q Consensus 238 ~~~~~~~~-~~~~~~~s~~~~~ 258 (309)
.|..++-+ +..-+.|.+||..
T Consensus 262 ~IY~~dqqdV~AGGSG~ACSAv 283 (331)
T TIGR02845 262 MIYRPDQQDVFAGGSGCACSAV 283 (331)
T ss_pred EEECCCCCCCCCCCCCCCHHHE
T ss_conf 7533887810577856650332
No 175
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=22.03 E-value=46 Score=12.66 Aligned_cols=66 Identities=14% Similarity=0.011 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH---HHH-----HHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 33089999999999626997999937444489989---999-----9999998618997189994588422220
Q gi|255764495|r 47 YFSKEVANLLINDILLHNVDHVSITGDIVNFTCNR---EIF-----TSTHWLRSIGNPHDISIVPGNHDAYISG 112 (309)
Q Consensus 47 ~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~---~~~-----~~~~~~~~l~~~~~v~~v~GNHD~~~~~ 112 (309)
......-+.+.+.+++.+||+||.|.=.|+.-..| +.. .+-.-+......+....|-=--|+..++
T Consensus 43 ~~Dl~dP~~l~~~~r~~~Pd~vvntAAYT~VD~AE~~~~~AyavNa~A~~~lA~~A~~~Ga~~vh~STDYVFDG 116 (317)
T TIGR01214 43 QLDLTDPEALEELLRAIRPDAVVNTAAYTDVDGAESDPEKAYAVNALAPQNLARAAARVGARLVHISTDYVFDG 116 (317)
T ss_pred HHCCCCHHHHHHHHHHHCCCEEEECCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECEEECC
T ss_conf 40622468899999852875376230110100003777787657407899999999866915999863423447
No 176
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit; InterPro: IPR006138 Respiratory-chain NADH dehydrogenase (1.6.5.3 from EC) (also known as complex I or NADH-ubiquinone oxidoreductase) is an oligomeric enzymatic complex located in the inner mitochondrial membrane which also seems to exist in the chloroplast and in cyanobacteria (as a NADH-plastoquinone oxidoreductase). Among the 25 to 30 polypeptide subunits of this bioenergetic enzyme complex there is one with a molecular weight of 20 kDa (in mammals) , which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is mitochondrial encoded in Paramecium (gene psbG) and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006120 mitochondrial electron transport NADH to ubiquinone.
Probab=22.01 E-value=46 Score=12.66 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=27.2
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-ECCCC
Q ss_conf 6997999937444489989999999999861899718999-45884
Q gi|255764495|r 63 HNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIV-PGNHD 107 (309)
Q Consensus 63 ~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~~~v~~v-~GNHD 107 (309)
.+.|++|++|=+|+.-.| .++++.++...| -|+| .|+==
T Consensus 56 RQaDvMIvAGT~t~KmAP----~lrrlYDQMPeP--KwVIsMG~CA 95 (146)
T TIGR01957 56 RQADVMIVAGTVTKKMAP----VLRRLYDQMPEP--KWVISMGACA 95 (146)
T ss_pred CCCCEEEECCCCCEEHHH----HHHHHHHHCCCC--CEEEECCCCC
T ss_conf 613334454864100434----776687537899--7798517600
No 177
>PRK00955 hypothetical protein; Provisional
Probab=21.89 E-value=46 Score=12.65 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=24.7
Q ss_pred CCCCEEEECCCCC-CCCCHHHHHHHHHHHH---------------------HHCCCCCEE-EEECCCCCCC
Q ss_conf 6997999937444-4899899999999998---------------------618997189-9945884222
Q gi|255764495|r 63 HNVDHVSITGDIV-NFTCNREIFTSTHWLR---------------------SIGNPHDIS-IVPGNHDAYI 110 (309)
Q Consensus 63 ~~pD~vvitGDl~-~~~~~~~~~~~~~~~~---------------------~l~~~~~v~-~v~GNHD~~~ 110 (309)
..+|+|++|||-. |..+=. .+....+++ .|+.|.-++ +..||-|.+.
T Consensus 12 d~lDvIlVtGDAYVDHPsFG-~AiIgR~Le~~GyrVgIIaQPdw~~~~df~~lG~PrLffgVsaGn~DSMV 81 (599)
T PRK00955 12 DELDFILVTGDAYVDHPSFG-TAIIGRVLEAEGFRVGIIAQPNWRDLEDFKKLGKPRLFFLVSAGNMDSMV 81 (599)
T ss_pred CCCCEEEEECCCCCCCCCCH-HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCEEEEECCCCHHHHH
T ss_conf 74778999476125686404-89999999976965989728998984779972898578776465487888
No 178
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=21.82 E-value=47 Score=12.64 Aligned_cols=13 Identities=8% Similarity=0.115 Sum_probs=6.4
Q ss_pred CCCEEEECCCCCC
Q ss_conf 9979999374444
Q gi|255764495|r 64 NVDHVSITGDIVN 76 (309)
Q Consensus 64 ~pD~vvitGDl~~ 76 (309)
+++.+++.=|+++
T Consensus 72 ~a~~~ilvfDit~ 84 (161)
T cd04124 72 KAHACILVFDVTR 84 (161)
T ss_pred CCCEEEEEEECCC
T ss_conf 6876799996897
No 179
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=21.73 E-value=47 Score=12.62 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=29.6
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCC-CCEEEEEC
Q ss_conf 99999999626997999937444489989999999999861899-71899945
Q gi|255764495|r 53 ANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNP-HDISIVPG 104 (309)
Q Consensus 53 l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~~-~~v~~v~G 104 (309)
.+.+++.+.+++||+|.++.=++.. ........+.+++...+ .|+ +|=|
T Consensus 39 ~e~~v~~a~~~~~d~I~lS~~~~~~--~~~~~~~i~~l~~~g~~~i~v-~vGG 88 (119)
T cd02067 39 PEEIVEAAKEEDADAIGLSGLLTTH--MTLMKEVIEELKEAGLDDIPV-LVGG 88 (119)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCC--HHHHHHHHHHHHHCCCCCCEE-EEEC
T ss_conf 9999999997099999996220242--689999999999769999859-9989
No 180
>PRK09191 two-component response regulator; Provisional
Probab=21.55 E-value=47 Score=12.60 Aligned_cols=18 Identities=17% Similarity=0.062 Sum_probs=9.6
Q ss_pred HHHHHHHHHHCCCEEEEE
Q ss_conf 789999998749819999
Q gi|255764495|r 211 IQRFQKMIWHEGADLILH 228 (309)
Q Consensus 211 ~~~l~~~l~~~~v~lvl~ 228 (309)
.++..++.++.++|++|.
T Consensus 171 ~~eAl~la~~~~PDlvL~ 188 (261)
T PRK09191 171 RAEAVALAKKTRPGLILA 188 (261)
T ss_pred HHHHHHHHHCCCCCEEEE
T ss_conf 999999974259898999
No 181
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase; InterPro: IPR012764 Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of Escherichia coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this family.; GO: 0016758 transferase activity transferring hexosyl groups, 0051473 glucosylglycerol biosynthetic process.
Probab=21.31 E-value=48 Score=12.57 Aligned_cols=15 Identities=27% Similarity=0.671 Sum_probs=8.7
Q ss_pred EEEEEEECCCCCCCC
Q ss_conf 089998376888764
Q gi|255764495|r 188 FRIIMMHHPPVLDTS 202 (309)
Q Consensus 188 ~~iv~~Hhpp~~~~~ 202 (309)
.+|.++||-|+++.+
T Consensus 160 lkIAFFHHTpFPs~D 174 (495)
T TIGR02398 160 LKIAFFHHTPFPSAD 174 (495)
T ss_pred CEEEEECCCCCCCCC
T ss_conf 603300168888754
No 182
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=21.30 E-value=48 Score=12.57 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=16.2
Q ss_pred HHHHHHHHCCCCEEEECCCCCC
Q ss_conf 9999996269979999374444
Q gi|255764495|r 55 LLINDILLHNVDHVSITGDIVN 76 (309)
Q Consensus 55 ~~~~~i~~~~pD~vvitGDl~~ 76 (309)
..++.|++++||.||+ ||.-
T Consensus 39 ~a~~~I~~q~PD~vvL--DIIM 58 (270)
T TIGR02875 39 DALELIKEQKPDVVVL--DIIM 58 (270)
T ss_pred HHHHHHHHCCCCEEEE--CCCC
T ss_conf 9999996089989995--1504
No 183
>PRK05637 anthranilate synthase component II; Provisional
Probab=21.18 E-value=48 Score=12.55 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=5.8
Q ss_pred HHHHCCCCEEEECC
Q ss_conf 99626997999937
Q gi|255764495|r 59 DILLHNVDHVSITG 72 (309)
Q Consensus 59 ~i~~~~pD~vvitG 72 (309)
++.+.+||.||+++
T Consensus 39 ~~~~~~pd~ivlSP 52 (208)
T PRK05637 39 TILAANPDLICLSP 52 (208)
T ss_pred HHHHCCCCEEEECC
T ss_conf 99851999599999
No 184
>KOG3873 consensus
Probab=21.11 E-value=48 Score=12.54 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 999999999852433697089998
Q gi|255764495|r 170 EQAHATSKLLRKANKKGFFRIIMM 193 (309)
Q Consensus 170 ~q~~~l~~~L~~~~~~~~~~iv~~ 193 (309)
.|...+.+.++.....+..+|+..
T Consensus 154 ~QAwdlaqfi~~t~q~~~vVI~~G 177 (422)
T KOG3873 154 AQAWDLAQFIRATRQNADVVILAG 177 (422)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 989999999999744786899946
No 185
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=21.09 E-value=48 Score=12.54 Aligned_cols=24 Identities=21% Similarity=0.108 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 089999999999626997999937
Q gi|255764495|r 49 SKEVANLLINDILLHNVDHVSITG 72 (309)
Q Consensus 49 ~~~~l~~~~~~i~~~~pD~vvitG 72 (309)
+....+.+.+.+.+.+||+||..|
T Consensus 46 ~~~~~~~l~~~l~~~~Pd~Vl~lG 69 (215)
T PRK13197 46 FGKSLDVLKEAIEEVQPDAVIAIG 69 (215)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 888899999999987998899924
No 186
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=21.04 E-value=48 Score=12.53 Aligned_cols=28 Identities=14% Similarity=-0.096 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 3089999999999626997999937444
Q gi|255764495|r 48 FSKEVANLLINDILLHNVDHVSITGDIV 75 (309)
Q Consensus 48 ~~~~~l~~~~~~i~~~~pD~vvitGDl~ 75 (309)
......+.+.+.+.+.+||+||+.|--.
T Consensus 44 ~~~~~~~~l~~~i~~~~Pd~vi~lG~a~ 71 (204)
T PRK13194 44 SFKRAREVLEKTLDEIKPDITINLGLAP 71 (204)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 6899999999999851998999824578
No 187
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=20.86 E-value=49 Score=12.51 Aligned_cols=21 Identities=10% Similarity=-0.118 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEC
Q ss_conf 999999999962699799993
Q gi|255764495|r 51 EVANLLINDILLHNVDHVSIT 71 (309)
Q Consensus 51 ~~l~~~~~~i~~~~pD~vvit 71 (309)
..++++.+.|++.+||.||+.
T Consensus 37 ~ay~~~~~~i~~~~pDtIVV~ 57 (294)
T cd07372 37 WAYERARESIEALKPDVLLVH 57 (294)
T ss_pred HHHHHHHHHHHHCCCCEEEEE
T ss_conf 999999999986399889998
No 188
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=20.84 E-value=49 Score=12.51 Aligned_cols=43 Identities=9% Similarity=0.253 Sum_probs=27.1
Q ss_pred HCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH---CCCCCEEEEECCCCC
Q ss_conf 26997999937444489989999999999861---899718999458842
Q gi|255764495|r 62 LHNVDHVSITGDIVNFTCNREIFTSTHWLRSI---GNPHDISIVPGNHDA 108 (309)
Q Consensus 62 ~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l---~~~~~v~~v~GNHD~ 108 (309)
-.++|.+++.=|+++. ..|+.+..|+..+ ....|+ ++.||--.
T Consensus 71 ~~~a~~~ilvydit~~---~Sf~~i~~W~~~i~~~~~~~~i-ilVGnK~D 116 (193)
T cd04118 71 YRGAKAAIVCYDLTDS---SSFERAKFWVKELQNLEEHCKI-YLCGTKSD 116 (193)
T ss_pred HCCCCEEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCCE-EEEEECHH
T ss_conf 3477445788306987---9999899999999974899997-99977466
No 189
>PRK04311 selenocysteine synthase; Provisional
Probab=20.69 E-value=46 Score=12.68 Aligned_cols=14 Identities=21% Similarity=0.074 Sum_probs=5.6
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 89999999999852
Q gi|255764495|r 168 GQEQAHATSKLLRK 181 (309)
Q Consensus 168 ~~~q~~~l~~~L~~ 181 (309)
+...+..|+..|..
T Consensus 327 DKltLaaLeaTL~~ 340 (465)
T PRK04311 327 DKLTLAALEATLRL 340 (465)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 99999999999999
No 190
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=20.61 E-value=49 Score=12.48 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCC-CCCCCCHHHH-HHHHHHHH-HHCCCCCEEEEECCCCCCCCC
Q ss_conf 330899999999996269979999374-4448998999-99999998-618997189994588422220
Q gi|255764495|r 47 YFSKEVANLLINDILLHNVDHVSITGD-IVNFTCNREI-FTSTHWLR-SIGNPHDISIVPGNHDAYISG 112 (309)
Q Consensus 47 ~~~~~~l~~~~~~i~~~~pD~vvitGD-l~~~~~~~~~-~~~~~~~~-~l~~~~~v~~v~GNHD~~~~~ 112 (309)
....+..+++++.+.+.+.|+++.=== +++....... ....+.+. -+...+.+|..-=|=|.....
T Consensus 40 ~~avd~t~~vi~~Ai~~~ad~ii~HHplif~~~~~~~~~~~~~~~i~~li~~~I~ly~~HtnlD~~~~g 108 (250)
T COG0327 40 AVALDATLAVLDEAIELGADLLIVHHPLIFWPVKSLAIDGPKGKRIKALIQNDINLYAAHTNLDAHPEG 108 (250)
T ss_pred EEHHHCCHHHHHHHHHCCCCEEEECCCHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCC
T ss_conf 132640698899998658688871582110577654454378899999986798599734563313465
No 191
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase; InterPro: IPR011821 Proteins in this entry are important in the interconversion of the sulphur-containing amino acids L-cysteine and L-methionine in bacteria. In bacteria, inorganic sulphur is reduced to sulphide, which is then used to displace the acetyl group of O-acetyl-L-serine to form the essential amino acid L-cysteine. Biosynthesis of L-methionine then occurs via the transsulphuration pathway which involves the sequential action of two pyridoxal 5'-phosphate (PLP) enzymes, cystathionine gamma-synthase (CGS) and cystathionine beta-lyase (CBL). Firstly CGS catalyses the formation of the intermediate cystathione from a homoserine ester and L-cysteine. This intermediate is then converted by CBL to L-homoserine, which is subsequently methylated by methionine synthase to form L-methionine. For more information see . The CGS enzyme (P00935 from SWISSPROT) from Escherichia coli is, like other CGS enzymes, a homotetramer composed of two catalytically active dimers . The active site of each dimer is found at the interface between the monomers and involves residues from each monomer. Catalysis occurs by alpha,gamma-elimination/replacement reactions..
Probab=20.60 E-value=49 Score=12.47 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=50.6
Q ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 41114278854100022210001210000012330899999999996269979999374444899899999999998618
Q gi|255764495|r 15 ISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIG 94 (309)
Q Consensus 15 lSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~ 94 (309)
++=|||++.+++.+ |...-.+.=.|+.+-.+++++..++++ +.+.++|| |+.|..+. .=++-.+.
T Consensus 23 VPPIyLSttY~F~g-----F~~PR~yDYsRsGNPTRd~l~~aLA~L-E~G~~AVv-----T~~GMsAI----~L~~~~lL 87 (383)
T TIGR02080 23 VPPIYLSTTYNFAG-----FNEPRAYDYSRSGNPTRDILQQALAEL-EGGAGAVV-----TNSGMSAI----DLVTTALL 87 (383)
T ss_pred CCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCCCEE-----CCCHHHHH----HHHHHHEE
T ss_conf 58863566767556-----777987666889897565899999998-48998256-----68568988----76643120
Q ss_pred CCCCEEEEECCCCCCCCC
Q ss_conf 997189994588422220
Q gi|255764495|r 95 NPHDISIVPGNHDAYISG 112 (309)
Q Consensus 95 ~~~~v~~v~GNHD~~~~~ 112 (309)
.|-.+.++| ||+|...
T Consensus 88 ~pdDLlvAP--HDCYGGt 103 (383)
T TIGR02080 88 GPDDLLVAP--HDCYGGT 103 (383)
T ss_pred CCCCEEEEC--CCCCCCH
T ss_conf 789768804--3267704
No 192
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.52 E-value=49 Score=12.46 Aligned_cols=40 Identities=8% Similarity=-0.011 Sum_probs=17.9
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 999999962699799993744448998999999999986189
Q gi|255764495|r 54 NLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGN 95 (309)
Q Consensus 54 ~~~~~~i~~~~pD~vvitGDl~~~~~~~~~~~~~~~~~~l~~ 95 (309)
+.+++.+.++++|+|.++.=.. .....+....+.+++...
T Consensus 40 e~~~~~a~e~~ad~i~vSsl~g--~~~~~~~~l~~~L~e~G~ 79 (128)
T cd02072 40 EEFIDAAIETDADAILVSSLYG--HGEIDCKGLREKCDEAGL 79 (128)
T ss_pred HHHHHHHHHCCCCEEEECCCCC--CCCHHHHHHHHHHHHCCC
T ss_conf 9999999873999999823202--562489999999996799
No 193
>CHL00101 trpG anthranilate synthase component 2
Probab=20.47 E-value=50 Score=12.46 Aligned_cols=12 Identities=25% Similarity=0.166 Sum_probs=4.8
Q ss_pred HHCCCCEEEECC
Q ss_conf 626997999937
Q gi|255764495|r 61 LLHNVDHVSITG 72 (309)
Q Consensus 61 ~~~~pD~vvitG 72 (309)
.+.+||.||++|
T Consensus 40 ~~~~p~gIILS~ 51 (190)
T CHL00101 40 KNLNPRHIIISP 51 (190)
T ss_pred HHCCCCEEEECC
T ss_conf 707979899979
No 194
>pfam00551 Formyl_trans_N Formyl transferase. This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.
Probab=20.04 E-value=51 Score=12.40 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=7.6
Q ss_pred CCCEEEEECCCCC
Q ss_conf 9718999458842
Q gi|255764495|r 96 PHDISIVPGNHDA 108 (309)
Q Consensus 96 ~~~v~~v~GNHD~ 108 (309)
+..+..|..|++.
T Consensus 27 ~~~I~~Visn~~~ 39 (181)
T pfam00551 27 EVEIVAVVTNKDK 39 (181)
T ss_pred CCEEEEEEECCCC
T ss_conf 9889999958957
Done!