HHsearch alignment for GI: 255764495 and conserved domain: smart00854
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=95.08 E-value=0.26 Score=27.48 Aligned_cols=196 Identities=12% Similarity=0.016 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCC--CCCCCCH------HHH---HHHHHHHHHHCCCCCEEEEECCCCCCCC-CHHH
Q ss_conf 30899999999996269979999374--4448998------999---9999999861899718999458842222-0356
Q gi|255764495|r 48 FSKEVANLLINDILLHNVDHVSITGD--IVNFTCN------REI---FTSTHWLRSIGNPHDISIVPGNHDAYIS-GAKE 115 (309)
Q Consensus 48 ~~~~~l~~~~~~i~~~~pD~vvitGD--l~~~~~~------~~~---~~~~~~~~~l~~~~~v~~v~GNHD~~~~-~~~~ 115 (309)
T Consensus 18 ~~~~~~~~v~~~~~--~aD~~~~NlE~~i~~~~~~~~~~~~~~f~~~~~~~~~L~~~--G~d~~slANNH~~D~G~~Gl~ 93 (239)
T smart00854 18 DFSPPFAGVKPLLR--AADLAIGNLETPITGSGSPASGKKYPNFRAPPENAAALKAA--GFDVVSLANNHSLDYGEEGLL 93 (239)
T ss_pred CCHHHHHHHHHHHH--HCCEEEEECCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHC--CCCEEEECCCCCCCCCHHHHH
T ss_conf 83578999999997--49999996402662899878777661202999999999982--999899317634312089999
Q ss_pred HHHHHHHHHHCCCC--CCCCCCCCCEEEEECCCEEEEEECCCCCCCC-----CCCCC--EECHHHHHHHHHHHHHCCCCC
Q ss_conf 76643245431344--4445556212799719879998328888887-----55476--008999999999985243369
Q gi|255764495|r 116 KSLHAWKDYITSDT--TCSTGKKLFPYLRIRNNIALIGCSTAIATPP-----FSANG--YFGQEQAHATSKLLRKANKKG 186 (309)
Q Consensus 116 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~l~s~~~~~~-----~~~~g--~~~~~q~~~l~~~L~~~~~~~ 186 (309)
T Consensus 94 ~Ti~~L~~~gi~~~G~g~~~~~a~~p~~~~~~g~~va~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~k~~~ 173 (239)
T smart00854 94 DTLAALDAAGIAHVGAGRNLAEARKPAIVEVKGIKIALLAYTYGTNNGWAASKDRPGVALLPDLDREKILADIARARKKA 173 (239)
T ss_pred HHHHHHHHCCCCCCCCCCCHHHCCCCEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999998699615898995773782899989989999998707788643778998712157017999999999885279
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 7089998376888764311012797899999987498199998767532478716998689999576
Q gi|255764495|r 187 FFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIAS 253 (309)
Q Consensus 187 ~~~iv~~Hhpp~~~~~~~~~~~~~~~~l~~~l~~~~v~lvl~GH~H~~~~~~~~~~~~~~~~~~~~s 253 (309)
T Consensus 174 D~vIv~~HwG~E~~~~----p~~~q~~~a~~lid~GaD~IiGhHpHv~q~~E~y~--~k~I~YSLGN 234 (239)
T smart00854 174 DVVIVSLHWGVEYQYE----PTDEQRELAHALIDAGADVVIGHHPHVLQPIEIYK--GKLIAYSLGN 234 (239)
T ss_pred CEEEEEEECCCCCCCC----CCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEC--CEEEEEECCC
T ss_conf 9999993015778779----99999999999997699999928998788749999--9999996720