RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|255764495|ref|YP_003065022.2| putative phosphoesterase
protein [Candidatus Liberibacter asiaticus str. psy62]
(309 letters)
>gnl|CDD|31599 COG1409, Icc, Predicted phosphohydrolases [General function
prediction only].
Length = 301
Score = 94.3 bits (233), Expect = 4e-20
Identities = 48/248 (19%), Positives = 88/248 (35%), Gaps = 20/248 (8%)
Query: 32 KRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLR 91
RI + + H S+E+ L+ I D + +TGD+ N E L
Sbjct: 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDGEPEEYRRLKELLA 60
Query: 92 SIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIG 151
+ P + +VPGNHDA + + S + Y CS R+ + +
Sbjct: 61 RLELPAPVIVVPGNHDARVVNGEAFSDQFFNRYAVLVGACS-----SGGWRVIGLDSSVP 115
Query: 152 CSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNR---- 207
G G EQ + L A ++ ++++HH P+ + +R
Sbjct: 116 G---------VPLGRLGAEQLDWLEEALAAAPERAKDTVVVLHHHPLPSPGTGVDRVALR 166
Query: 208 MFGIQRFQKMIWHEGADLILHGHTHL--NSLHWIKNEKKLIPVVGIASASQKVHSNKPQA 265
G + L+L GH HL +++ + + +VG A+
Sbjct: 167 DAGELLDVLIAHGNDVRLVLSGHIHLAAQTVYQLNGTRLSDLLVGAGPATCSQVFRGSAT 226
Query: 266 SYNLFYIE 273
++N ++
Sbjct: 227 AFNTLDLD 234
>gnl|CDD|143917 pfam00149, Metallophos, Calcineurin-like phosphoesterase. This
family includes a diverse range of phosphoesterases,
including protein phosphoserine phosphatases,
nucleotidases, sphingomyelin phosphodiesterases and
2'-3' cAMP phosphodiesterases as well as nucleases such
as bacterial SbcD or yeast MRE11. The most conserved
regions in this superfamily centre around the metal
chelating residues.
Length = 186
Score = 54.0 bits (129), Expect = 5e-08
Identities = 38/224 (16%), Positives = 67/224 (29%), Gaps = 41/224 (18%)
Query: 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVS 69
+ I D+H ++ LL+ + D V
Sbjct: 1 MRILVIGDLHGGLD-------------------------DLDLLLLLLELLGEPKPDLVL 35
Query: 70 ITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDT 129
GD+V+ + + + P + +V GNHD
Sbjct: 36 FLGDLVDRGPPSLEVLALLFALKLKAPGPVYLVRGNHDFD---------SGNSVLGFYLE 86
Query: 130 TCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFR 189
L + ++G S + G E+ LL A +
Sbjct: 87 CAGLPYVLGNGDVSNGTVEIVGLS-----SLYGKGGGLVWEEFLELLDLLLLAALVDG-K 140
Query: 190 IIMMHHPPVLDTSSLYNR-MFGIQRFQKMIWHEGADLILHGHTH 232
I+++H P S + +FG + + ++ G DL+L GHTH
Sbjct: 141 ILLVHGPLSPSLDSGDDIYLFGEEALEDLLKDNGVDLVLRGHTH 184
>gnl|CDD|163643 cd07400, MPP_YydB, Bacillus subtilis YydB and related proteins,
metallophosphatase domain. YydB (BSU40220) is an
uncharacterized Bacillus subtilis protein that belongs
to the following Bacillus subtilis gene cluster
yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 144
Score = 52.0 bits (125), Expect = 2e-07
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 19/98 (19%)
Query: 12 LAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSIT 71
+ H+SD+H L + D V IT
Sbjct: 1 ILHLSDLHFGPERKPEL-----------LALLSLLDRLLAEIKAL-------DPDLVVIT 42
Query: 72 GDIVNFTCNREIFTSTHWLRSIGNP-HDISIVPGNHDA 108
GD+ E + +L ++ P + +VPGNHD
Sbjct: 43 GDLTQRGLPEEFEEAREFLDALPAPLEPVLVVPGNHDV 80
Score = 45.8 bits (109), Expect = 2e-05
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 190 IIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVV 249
I+++HHP V S R+ K++ G DL+LHGH H+ + I N + V+
Sbjct: 81 IVVLHHPLVPPPGSGRERLLDAGDALKLLAEAGVDLVLHGHKHVPYVGNISNAGGGLVVI 140
Query: 250 G 250
G
Sbjct: 141 G 141
>gnl|CDD|163645 cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related
proteins, metallophosphatase domain. GpdQ
(glycerophosphodiesterase Q, also known as Rv0805 in
Mycobacterium tuberculosis) is a binuclear
metallophosphoesterase from Enterobacter aerogenes that
catalyzes the hydrolysis of mono-, di-, and triester
substrates, including some organophosphate pesticides
and products of the degradation of nerve agents. The
GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide
phosphodiesterase activity. GpdQ and Rv0805 belong to
the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 240
Score = 49.1 bits (118), Expect = 2e-06
Identities = 47/230 (20%), Positives = 73/230 (31%), Gaps = 48/230 (20%)
Query: 12 LAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSIT 71
LA ISD+HL ++G+ +A IN L D V +T
Sbjct: 2 LAQISDLHL------RADGEGALLGVDTAA-----SLEAVLA--HINA-LHPRPDLVLVT 47
Query: 72 GDIVNFTCNREIFTSTHWLRSIGNPHDI--SIVPGNHDAYISGAKEKSLHAWKDYITSDT 129
GD+ + S LR + I ++PGNHD + + +
Sbjct: 48 GDLTD--DGSP--ESYERLRELLAALPIPVYLLPGNHD-----DRAAMRAVFPEL----- 93
Query: 130 TCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFR 189
Y+ LI +++ G Q L +A K
Sbjct: 94 --PPAPGFVQYVVDLGGWRLILLDSSVPGQHG---GELCAAQLDWLEAALAEAPDKPT-- 146
Query: 190 IIMMHHPPV------LDTSSLYNRMFGIQRFQKMI-WHEGADLILHGHTH 232
++ +HHPP +D L N + ++ H IL GH H
Sbjct: 147 LVFLHHPPFPVGIAWMDAIGLRNA----EALAAVLARHPNVRAILCGHVH 192
>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily,
metallophosphatase domain. Metallophosphatases (MPPs),
also known as metallophosphoesterases,
phosphodiesterases (PDEs), binuclear
metallophosphoesterases, and dimetal-containing
phosphoesterases (DMPs), represent a diverse superfamily
of enzymes with a conserved domain containing an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
This superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 131
Score = 44.6 bits (105), Expect = 3e-05
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 190 IIMMHHPPVLDTSSLYN-RMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPV 248
I++ H PP L G + +++ G DL+L GHTH+ L
Sbjct: 70 ILLTHGPPYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYERREPDGGGTLYIN 129
Query: 249 VG 250
G
Sbjct: 130 PG 131
Score = 33.8 bits (77), Expect = 0.065
Identities = 14/55 (25%), Positives = 21/55 (38%)
Query: 53 ANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHD 107
A L D V + GD+V + E + + + +VPGNHD
Sbjct: 15 AVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD 69
>gnl|CDD|163628 cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins,
C-terminal metallophosphatase domain. YkuE is an
uncharacterized Bacillus subtilis protein with a
C-terminal metallophosphatase domain and an N-terminal
twin-arginine (RR) motif. An RR-signal peptide derived
from the Bacillus subtilis YkuE protein can direct
Tat-dependent secretion of agarase in Streptomyces
lividans. This is an indication that YkuE is transported
by the Bacillus subtilis Tat (Twin-arginine
translocation) pathway machinery. YkuE belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 223
Score = 40.3 bits (95), Expect = 6e-04
Identities = 49/222 (22%), Positives = 80/222 (36%), Gaps = 62/222 (27%)
Query: 12 LAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSIT 71
+AH+SD+HL F ++ + V IN D V +T
Sbjct: 4 IAHLSDLHLG-------------------PFVSRERLERLVE--KINA---LKPDLVVLT 39
Query: 72 GDIVNFTCN-REIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTT 130
GD+V+ + + E+ L+ + P + V GNHD Y SG +E + A +
Sbjct: 40 GDLVDGSVDVLELLLEL--LKKLKAPLGVYAVLGNHD-YYSGDEENWIEALE-------- 88
Query: 131 CSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRI 190
S G + +RN I A +G + K L+ ++ I
Sbjct: 89 -SAGITV-----LRNESVEISVGGATIGIAGVDDGLGRRPDL---EKALKGLDEDD-PNI 138
Query: 191 IMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTH 232
++ H P + ++ + G DL L GHTH
Sbjct: 139 LLAHQPDTAEEAAAW----------------GVDLQLSGHTH 164
>gnl|CDD|30769 COG0420, SbcD, DNA repair exonuclease [DNA replication,
recombination, and repair].
Length = 390
Score = 36.3 bits (83), Expect = 0.010
Identities = 44/233 (18%), Positives = 69/233 (29%), Gaps = 36/233 (15%)
Query: 12 LAHISDIHLSY----SPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDH 67
+ H SD HL PS E K+ + L+ VD
Sbjct: 3 ILHTSDWHLGSKQLNLPSRLEDQ-------------------KKAFDELLEIAKEEKVDF 43
Query: 68 VSITGDIVNFTCNREIFTSTHWLRSIGNPHDISI----VPGNHDAYISGAKEKSLHAWKD 123
V I GD+ + T N +L ++ D I + GNHD S ++
Sbjct: 44 VLIAGDLFD-TNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHD---SPSRLSEASPLLL 99
Query: 124 YITSDTTCSTGKKLFPYLR--IRNNIALIGCSTAIATPPFSANGYFGQEQAHATSK-LLR 180
G+ + I LI NG ++ K LL
Sbjct: 100 LNNLGLHGVVGRLVHEIRPPEIVAAPWLIPGPDPDVVFFLGLNGLEKEQFELLLHKGLLS 159
Query: 181 KANKKGFFRIIMMH-HPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTH 232
+ I+++H L + + + G + G D + GH H
Sbjct: 160 ALDPDDDPSILVLHQSIDALTSGAERDLALGTVDLSL-LPKGGFDYVALGHIH 211
>gnl|CDD|163654 cd07411, MPP_SoxB_N, Thermus thermophilus SoxB and related
proteins, N-terminal metallophosphatase domain. SoxB
(sulfur oxidation protein B) is a periplasmic
thiosulfohydrolase and an essential component of the
sulfur oxidation pathway in archaea and bacteria. SoxB
has a dinuclear manganese cluster and is thought to
catalyze the release of sulfate from a protein-bound
cysteine S-thiosulfonate. SoxB is expressed from the
sox (sulfur oxidation) gene cluster, which encodes 15
other sox genes, and has two domains, an N-terminal
metallophosphatase domain and a C-terminal
5'-nucleotidase domain. SoxB binds the SoxYZ complex
and is thought to function as a sulfate-thiohydrolase.
SoxB is closely related to the UshA, YchR, and CpdB
proteins, all of which have the same two-domain
architecture. The N-terminal metallophosphatase domain
belongs to a large superfamily of distantly related
metallophosphatases (MPPs) that includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 264
Score = 35.7 bits (83), Expect = 0.015
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 20/108 (18%)
Query: 133 TGKKLFPYLRIRN----NIALIGCSTA---IATPPFSANGY-FGQEQAHATSKLLRKANK 184
G+++FP RI+ I +IG + IA PP G FG + +++ +
Sbjct: 122 AGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGIREEELQEVVVKLRRE 181
Query: 185 KGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTH 232
+G ++++ H N + + + G D+IL GHTH
Sbjct: 182 EGVDVVVLLSH----------NGLPVDVELAERV--PGIDVILSGHTH 217
>gnl|CDD|163641 cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related
proteins, metallophosphatase domain. YbbF/LpxH is an
Escherichia coli UDP-2,3-diacylglucosamine hydrolase
thought to catalyze the fourth step of lipid A
biosynthesis, in which a precursor
UDP-2,3-diacylglucosamine is hydrolyzed to yield
2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs
to the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 217
Score = 34.7 bits (80), Expect = 0.036
Identities = 34/235 (14%), Positives = 64/235 (27%), Gaps = 45/235 (19%)
Query: 15 ISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDI 74
ISD+HL + + L+ + L D + + GDI
Sbjct: 3 ISDLHLGDGGPAAD----------------------FLLLFLLAALALGEADALYLLGDI 40
Query: 75 VNFTCNREIFTSTHW-------LRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITS 127
+ + LR + VPGNHD + + L
Sbjct: 41 FDLWFGDDEVVPPAAHEVLAALLRLADRGTRVYYVPGNHDFLLGDFFAEELG-------- 92
Query: 128 DTTCSTGKKLFPYLRIRNNIALI-----GCSTAIATPPFSANGYFGQEQAHATSKLLRKA 182
+L + L+ + A G +Q ++ L +
Sbjct: 93 ---LILLPDPLVHLELDGKRILLEHGDQFDTDDRAYQLLRRLGRNPYDQLLFLNRPLNRR 149
Query: 183 NKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLH 237
+ ++ + ++ +G D ++ GHTH +LH
Sbjct: 150 RGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPALH 204
>gnl|CDD|163616 cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase
domain. Mre11 (also known as SbcD in Escherichia coli)
is a subunit of the MRX protein complex. This complex
includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital
role in several nuclear processes including DNA
double-strand break repair, telomere length maintenance,
cell cycle checkpoint control, and meiotic
recombination, in eukaryotes. During double-strand
break repair, the MRX complex is required to hold the
two ends of a broken chromosome together. In vitro
studies show that Mre11 has 3'-5' exonuclease activity
on dsDNA templates and endonuclease activity on dsDNA
and ssDNA templates. In addition to the N-terminal
phosphatase domain, the eukaryotic MRE11 members of this
family have a C-terminal DNA binding domain (not
included in this alignment model). MRE11-like proteins
are found in prokaryotes and archaea was well as in
eukaryotes. Mre11 belongs to the metallophosphatase
(MPP) superfamily. MPPs are functionally diverse, but
all share a conserved domain with an active site
consisting of two metal ions (usually manganese, iron,
or zinc) coordinated with octahedral geometry by a cage
of histidine, aspartate, and asparagine residues. The
MPP superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 223
Score = 33.1 bits (76), Expect = 0.090
Identities = 37/228 (16%), Positives = 69/228 (30%), Gaps = 37/228 (16%)
Query: 12 LAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSIT 71
H +D HL LS R R++ E ++ + VD V I
Sbjct: 2 FLHTADWHLGKP--LKGLSRDR----------RREDQ-FEAFEEIVELAIEEKVDFVLIA 48
Query: 72 GDIVNFTCNREIFTSTHWLRSIGNPHDISI----VPGNHDAYISGAKEKSLHAWKDYITS 127
GD+ + + N + ++ + I + GNHD+ L A
Sbjct: 49 GDLFD-SNNPSPEALELLIEALRRLKEAGIPVFIIAGNHDSPSRLGALSPLLALSGLHLV 107
Query: 128 DTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAH---ATSKLLRKANK 184
L +A+ G Y + + A ++L +
Sbjct: 108 GVEEDVLTPLLLPKGG-TGVAIYGLP------------YLRRSRLRDLLADAELRPRPLD 154
Query: 185 KGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTH 232
F I+++H + + + + ++ G D + GH H
Sbjct: 155 PDDFNILLLHGG--VAGAGPSDSERAPFVPEALL-PAGFDYVALGHIH 199
>gnl|CDD|163636 cd07393, MPP_DR1119, Deinococcus radiodurans DR1119 and related
proteins, metallophosphatase domain. DR1119 is an
uncharacterized Deinococcus radiodurans protein with a
metallophosphatase domain. The domain present in
members of this family belongs to the metallophosphatase
(MPP) superfamily. MPPs are functionally diverse, but
all share a conserved domain with an active site
consisting of two metal ions (usually manganese, iron,
or zinc) coordinated with octahedral geometry by a cage
of histidine, aspartate, and asparagine residues. The
MPP superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 232
Score = 32.3 bits (74), Expect = 0.16
Identities = 52/231 (22%), Positives = 85/231 (36%), Gaps = 44/231 (19%)
Query: 15 ISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDI 74
I+D+HL+ P+ P + G W K + K N D ++ D V I GDI
Sbjct: 4 IADLHLNLDPT----KPMDVFGP-EW----KNHTEKIKENW---DNVVAPEDIVLIPGDI 51
Query: 75 VNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTG 134
E W+ ++ P ++ GNHD Y G+ K A ++ +
Sbjct: 52 SWAMKLEEAKLDLAWIDAL--PGTKVLLKGNHD-YWWGSASKLRKALEE------SRLAL 102
Query: 135 KKLFPYLRIRNNIALIG---------CSTAIATPPFSA--NGYFGQEQAH--ATSKLLRK 181
Y I +++A+ G I F +E + K +K
Sbjct: 103 LFNNAY--IDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELERLELSLKAAKK 160
Query: 182 ANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTH 232
K+ +I+M+H+PP N K+I G D+ ++GH H
Sbjct: 161 REKEK-IKIVMLHYPP-------ANENGDDSPISKLIEEYGVDICVYGHLH 203
>gnl|CDD|31597 COG1407, COG1407, Predicted ICC-like phosphoesterases [General
function prediction only].
Length = 235
Score = 31.9 bits (72), Expect = 0.21
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 15 ISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDI 74
++D+HL Y S G+ N +Y + + L I + + I GD+
Sbjct: 25 VADLHLGYEESL------ARRGI-----NLPRYQTDRILKRLDRIIERYGPKRLIILGDL 73
Query: 75 V-NFTCN-REIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKS 117
F + R+ + + ++ I+ GNHD I
Sbjct: 74 KHEFGKSLRQEKEEVREFLELLDEREVIIIRGNHDNGIEEILPGF 118
>gnl|CDD|31598 COG1408, COG1408, Predicted phosphohydrolases [General function
prediction only].
Length = 284
Score = 31.9 bits (72), Expect = 0.24
Identities = 36/229 (15%), Positives = 71/229 (31%), Gaps = 61/229 (26%)
Query: 12 LAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSIT 71
+ +SD+H K +AN L D+++ +T
Sbjct: 47 IVQLSDLHSL------------------PFREEKLALLIAIANEL-PDLIV-------LT 80
Query: 72 GDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTC 131
GD V+ + +L + P + V GNHD + + + +
Sbjct: 81 GDYVDGDRPPGVAALALFLAKLKAPLGVFAVLGNHDYGVDRSNVYI-----GDLLEELGR 135
Query: 132 STGKKLFPYLRIR--------NNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKAN 183
+ + + ++ L G +A P + ++ L++ +
Sbjct: 136 VVLRNEIAVIDLLALRIEVGGLDLYLAGVEDILAGLPLAPFTI-----GLDIAEALKQLD 190
Query: 184 KKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTH 232
+ I++ H P I + + G DL+L GHTH
Sbjct: 191 EDLPG--ILLSHEPD-----------IILQLRL----YGVDLVLSGHTH 222
>gnl|CDD|163634 cd07391, MPP_PF1019, Pyrococcus furiosus PF1019 and related
proteins, metallophosphatase domain. This family
includes bacterial and archeal proteins homologous to
PF1019, an uncharacterized Pyrococcus furiosus protein.
The domain present in members of this family belongs to
the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 172
Score = 31.5 bits (72), Expect = 0.26
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 13/113 (11%)
Query: 15 ISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDI 74
++D+HL +R I L + + L+ + + + I GD+
Sbjct: 3 VADLHLGKEEEL----RRRGILLPRGQTED---TLERLDRLIEE----YGPERLIILGDL 51
Query: 75 V-NFTCNREIFTSTHW-LRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYI 125
+F LR + D+ ++ GNHD + + + +
Sbjct: 52 KHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGGLPEILKDLNVEVVEGL 104
>gnl|CDD|163644 cd07401, MPP_TMEM62_N, Homo sapiens TMEM62, N-terminal
metallophosphatase domain. TMEM62 (transmembrane
protein 62) is an uncharacterized Homo sapiens
transmembrane protein with an N-terminal
metallophosphatase domain. TMEM62 belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 256
Score = 30.8 bits (70), Expect = 0.47
Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 12/136 (8%)
Query: 101 IVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIA--- 157
+ GNHD + Y T G F + N + IG +
Sbjct: 81 DIRGNHDLF--NIPSLD-SENNYYRKYSATGRDGSFSFSHTTRFGNYSFIGVDPTLFPGP 137
Query: 158 TPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQR-FQK 216
PF+ G ++ K L K+ + I H+P TS++ + F+
Sbjct: 138 KRPFNFFGSLDKKLLDRLEKELEKSTNSN-YTIWFGHYP----TSTIISPSAKSSSKFKD 192
Query: 217 MIWHEGADLILHGHTH 232
++ L GH H
Sbjct: 193 LLKKYNVTAYLCGHLH 208
>gnl|CDD|163635 cd07392, MPP_PAE1087, Pyrobaculum aerophilum PAE1087 and related
proteins, metallophosphatase domain. PAE1087 is an
uncharacterized Pyrobaculum aerophilum protein with a
metallophosphatase domain. The domain present in
members of this family belongs to the metallophosphatase
(MPP) superfamily. MPPs are functionally diverse, but
all share a conserved domain with an active site
consisting of two metal ions (usually manganese, iron,
or zinc) coordinated with octahedral geometry by a cage
of histidine, aspartate, and asparagine residues. The
MPP superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 188
Score = 30.7 bits (70), Expect = 0.48
Identities = 42/188 (22%), Positives = 66/188 (35%), Gaps = 30/188 (15%)
Query: 48 FSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHD 107
K A +L + D V + GDI NF +E + L +IG P + VPGN D
Sbjct: 11 VEKLEAIILKAE----EADAVIVAGDITNFG-GKEAAVEINLLLAIGVP--VLAVPGNCD 63
Query: 108 AYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYF 167
+TS GK + +G + TP F+
Sbjct: 64 T----------PEILGLLTSAGLNLHGKVVE-----VGGYTFVGIGGSNPTP-FNTPIEL 107
Query: 168 GQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTS--SLYNRMF-GIQRFQKMIWHEGAD 224
+E+ + +L K +I++ H P T+ + G + +K I
Sbjct: 108 SEEEIVSDGRLNNLLAK----NLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIEERQPL 163
Query: 225 LILHGHTH 232
L + GH H
Sbjct: 164 LCICGHIH 171
>gnl|CDD|163622 cd07379, MPP_239FB, Homo sapiens 239FB and related proteins,
metallophosphatase domain. 239FB (Fetal brain protein
239) is thought to play a role in central nervous system
development, but its specific role in unknown. 239FB is
expressed predominantly in human fetal brain from a gene
located in the chromosome 11p13 region associated with
the mental retardation component of the WAGR (Wilms
tumor, Aniridia, Genitourinary anomalies, Mental
retardation) syndrome. Orthologous brp-like (brain
protein 239-like) proteins have been identified in the
invertebrate amphioxus group and in vertebrates. 239FB
belongs to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 135
Score = 30.3 bits (69), Expect = 0.80
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 59 DILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYI 110
D+L+H GD+ E+ WL+S+ +PH I ++ GNHD +
Sbjct: 21 DVLIH-------AGDLTERGTLEELQKFLDWLKSLPHPHKI-VIAGNHDLTL 64
>gnl|CDD|163617 cd00841, MPP_YfcE, Escherichia coli YfcE and related proteins,
metallophosphatase domain. YfcE is a
manganase-dependent metallophosphatase, found in
bacteria and archaea, that cleaves bis-p-nitrophenyl
phosphate, thymidine 5'-monophosphate-p-nitrophenyl
ester, and p-nitrophenyl phosphorylcholine, but is
unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic
phosphodiesters, and various phosphomonoesters,
including p-nitrophenyl phosphate. This family also
includes the Bacilus subtilis YsnB and Methanococcus
jannaschii MJ0936 proteins. This domain family belongs
to the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 155
Score = 29.9 bits (68), Expect = 0.86
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 188 FRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKN 241
RI + H + L + GAD++L+GHTH+ + I
Sbjct: 76 KRIFLTHGHLYGVKNGLDRLYLAKE--------GGADVVLYGHTHIPVIEKIGG 121
>gnl|CDD|163638 cd07395, MPP_CSTP1, Homo sapiens CSTP1 and related proteins,
metallophosphatase domain. CSTP1 (complete
S-transactivated protein 1) is an uncharacterized Homo
sapiens protein with a metallophosphatase domain, that
is transactivated by the complete S protein of hepatitis
B virus. CSTP1 belongs to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 262
Score = 29.2 bits (66), Expect = 1.7
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 179 LRKANKKGFFRIIM-MHHPPVLDTSSLYNRMFGIQRFQKMIW-----HEGADLILHGHTH 232
L A + +I+ H P L+ + F I + + G + GH H
Sbjct: 157 LEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYH 216
Query: 233 LN 234
N
Sbjct: 217 RN 218
>gnl|CDD|36592 KOG1378, KOG1378, KOG1378, Purple acid phosphatase [Carbohydrate
transport and metabolism].
Length = 452
Score = 28.8 bits (64), Expect = 2.0
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 168 GQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQR-----FQKMIWHEG 222
G Q + L ++K +I+ H P+ +S+ + G + +
Sbjct: 273 GTAQYQWLERDLASVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYK 332
Query: 223 ADLILHGHTHLNSLHW 238
D++ GH H
Sbjct: 333 VDVVFWGHVHRYERFC 348
>gnl|CDD|163618 cd00842, MPP_ASMase, acid sphingomyelinase and related proteins,
metallophosphatase domain. Acid sphingomyelinase
(ASMase) is a ubiquitously expressed phosphodiesterase
which hydrolyzes sphingomyelin in acid pH conditions to
form ceramide, a bioactive second messenger, as part of
the sphingomyelin signaling pathway. ASMase is
localized at the noncytosolic leaflet of biomembranes
(for example the luminal leaflet of endosomes, lysosomes
and phagosomes, and the extracellular leaflet of plasma
membranes). ASMase-deficient humans develop
Niemann-Pick disease. This disease is characterized by
lysosomal storage of sphingomyelin in all tissues.
Although ASMase-deficient mice are resistant to
stress-induced apoptosis, they have greater
susceptibility to bacterial infection. The latter
correlates with defective phagolysosomal fusion and
antibacterial killing activity in ASMase-deficient
macrophages. ASMase belongs to the metallophosphatase
(MPP) superfamily. MPPs are functionally diverse, but
all share a conserved domain with an active site
consisting of two metal ions (usually manganese, iron,
or zinc) coordinated with octahedral geometry by a cage
of histidine, aspartate, and asparagine residues. The
MPP superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 296
Score = 28.8 bits (65), Expect = 2.2
Identities = 44/285 (15%), Positives = 90/285 (31%), Gaps = 54/285 (18%)
Query: 14 HISDIHL--SYSP-SFFELSPKRIIGLVNWHFNRKK---YF-------SKEVANLLINDI 60
HISDIH Y S + + + + + + + + I
Sbjct: 3 HISDIHYDPLYKVGSEYSANCHSPLCCRDESGDISPPAGPWGDYGCDSPWRLVESALEAI 62
Query: 61 --LLHNVDHVSITGDIV--NFTCNREIFTSTHWLRSIGNPH-----DISIVP--GNHDAY 109
D + TGD+V + + ++ + D + P GNHD+Y
Sbjct: 63 KKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSY 122
Query: 110 I-----SGAKEKSL-----HAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAI--- 156
L WK ++ + + K + + ++ + +I +T +
Sbjct: 123 PVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYK 182
Query: 157 ---ATPPFSANGYFGQEQ-AHATSKLLRKANKKGFFRIIMMHHPPVLDTSSL---YNRMF 209
+ GQ Q + +A +K I+ H PP +++ ++ +
Sbjct: 183 KNFWLLGSNETDPAGQLQWLEDELQEAEQAGEK---VWIIGHIPPGVNSYDTLENWSERY 239
Query: 210 G--IQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIA 252
I R+ I GHTH + ++ + +A
Sbjct: 240 LQIINRYSDTI-----AGQFFGHTHRDEFRVFYDDNDTGEPINVA 279
>gnl|CDD|163624 cd07381, MPP_CapA, CapA and related proteins, metallophosphatase
domain. CapA is one of three membrane-associated
enzymes in Bacillus anthracis that is required for
synthesis of gamma-polyglutamic acid (PGA), a major
component of the bacterial capsule. The YwtB and PgsA
proteins of Bacillus subtilis are closely related to
CapA and are also included in this alignment model.
CapA belongs to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 239
Score = 28.4 bits (64), Expect = 3.0
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 15/94 (15%)
Query: 146 NIALIGCS---TAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTS 202
+A + + I + G + + +A KK I+ +H
Sbjct: 132 KVAFLAYTYGTNGIPLAAGARPGGVNPLDLERIAADIAEAKKKADIVIVSLHWG------ 185
Query: 203 SLYNRMFGIQRFQKMIWHE----GADLILHGHTH 232
+ Q+ + GADL++ H H
Sbjct: 186 --VEYSYYPTPEQRELARALIDAGADLVIGHHPH 217
>gnl|CDD|39704 KOG4504, KOG4504, KOG4504, Cation-independent mannose-6-phosphate
receptor CI-MPR [Signal transduction mechanisms,
Intracellular trafficking, secretion, and vesicular
transport].
Length = 370
Score = 28.1 bits (62), Expect = 3.5
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 42 FNRKKYFSKEVANLLI----NDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPH 97
F + + + L N + +S +++F C E + + GN
Sbjct: 152 FGQTRISVGKANKRLQLVYKNGSPCPSKSGLSYK-TLISFVCRPEAGPTNRPILYSGNLQ 210
Query: 98 DIS 100
+
Sbjct: 211 TCT 213
>gnl|CDD|163647 cd07404, MPP_MS158, Microscilla MS158 and related proteins,
metallophosphatase domain. MS158 is an uncharacterized
Microscilla protein with a metallophosphatase domain.
Microscilla proteins MS152, and MS153 are also included
in this family. The domain present in members of this
family belongs to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 166
Score = 27.6 bits (62), Expect = 3.9
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 190 IIMMHHPP------VLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLN 234
+++ HH P SL N F +I + DL +HGHTH N
Sbjct: 100 VVVTHHAPSPLSLAPQYGDSLVNAAF-AVDLDDLILADPIDLWIHGHTHFN 149
>gnl|CDD|144907 pfam01487, DHquinase_I, Type I 3-dehydroquinase. Type I
3-dehydroquinase, (3-dehydroquinate dehydratase or
DHQase.) Catalyses the cis-dehydration of
3-dehydroquinate via a covalent imine intermediate
giving dehydroshikimate. Dehydroquinase functions in the
shikimate pathway which is involved in the biosynthesis
of aromatic amino acids. Type II 3-dehydroquinase
catalyses the trans-dehydration of 3-dehydroshikimate
see pfam01220.
Length = 222
Score = 27.9 bits (63), Expect = 4.0
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 178 LLRKANKKGFFRIIMMHH-----PPVLDTSSLYNRM 208
L A KKG +II+ +H P + SLY M
Sbjct: 103 LSVIAAKKGGTKIILSYHDFEGTPSWEELLSLYEEM 138
>gnl|CDD|33306 COG3503, COG3503, Predicted membrane protein [Function unknown].
Length = 323
Score = 27.6 bits (61), Expect = 4.1
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 137 LFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHP 196
L P+ + L+G + A P A + LL N + + ++H P
Sbjct: 183 LLPWF----GVFLLGIAFGNALRPGGPRARRRSPAALGLALLLLAFNGRHSLKPYLIHQP 238
Query: 197 PVLDTSSLYN 206
++ L+N
Sbjct: 239 VLIGLVWLFN 248
>gnl|CDD|38150 KOG2939, KOG2939, KOG2939, Uncharacterized conserved protein
[Function unknown].
Length = 502
Score = 27.7 bits (61), Expect = 4.5
Identities = 8/48 (16%), Positives = 15/48 (31%)
Query: 255 SQKVHSNKPQASYNLFYIEKKNEYWTLEGKRYTLSPDSLSIQKDYSDI 302
S+ S+ P + + N + G ++ YS I
Sbjct: 209 SRFPSSSSPSNTIDPSGNSSGNPFELKSGHSFSAKSTHYRSDGYYSSI 256
>gnl|CDD|37195 KOG1984, KOG1984, KOG1984, Vesicle coat complex COPII, subunit SFB3
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 1007
Score = 27.6 bits (61), Expect = 4.8
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 138 FPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLR 180
P + I ++ + T PP +F Q+Q + + + +R
Sbjct: 249 PPQVSIEDDSSFRSTDTRAQPPPLVTTDFFIQDQGNCSPRFMR 291
>gnl|CDD|31080 COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and
related esterases [Nucleotide transport and metabolism].
Length = 517
Score = 27.4 bits (60), Expect = 4.9
Identities = 52/232 (22%), Positives = 80/232 (34%), Gaps = 26/232 (11%)
Query: 14 HISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGD 73
H +D+H E G + R K++ N +LL D I G
Sbjct: 31 HTNDLH-----GHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDL--IQGS 83
Query: 74 IVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHD-AYISGAKEKSLHAWKDYITS---DT 129
++ + T L ++G +D + GNH+ Y A + L K + S
Sbjct: 84 PLSDYLTKGEPTVD-LLNALG--YDAMTL-GNHEFDYGLEALARLLDEAKFPVLSANVYD 139
Query: 130 TCSTGKKLFPYLRIRN----NIALIGCSTAIATPPFSANGYFGQE---QAHATSKLLRKA 182
STG F I+ I +IG +T N G A K + +
Sbjct: 140 KNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPEL 199
Query: 183 NKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLN 234
+G II + H + D L + + G G DLI+ GH+H
Sbjct: 200 KGEGVDVIIALSHLGIEDDLELASEVPGDVDVAV----PGIDLIIGGHSHTV 247
>gnl|CDD|32732 COG2908, COG2908, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 237
Score = 27.5 bits (61), Expect = 5.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 221 EGADLILHGHTHLNSLHWIKN 241
G D ++HGHTH ++H I
Sbjct: 186 HGVDGVIHGHTHRPAIHNIPG 206
>gnl|CDD|146114 pfam03314, DUF273, Protein of unknown function, DUF273.
Length = 222
Score = 27.3 bits (61), Expect = 6.2
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 8/36 (22%)
Query: 216 KMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGI 251
+W D +LHG W N+ + P +
Sbjct: 190 SSVWSPERDFMLHG--------WKTNQLRETPNGIL 217
>gnl|CDD|163629 cd07386, MPP_DNA_pol_II_small_archeal_C, archeal DNA polymerase II,
small subunit, C-terminal metallophosphatase domain.
The small subunit of the archeal DNA polymerase II
contains a C-terminal metallophosphatase domain. This
domain is thought to be functionally active because the
active site residues required for phosphoesterase
activity in other members of this superfamily are
intact. The archeal replicative DNA polymerases are
thought to possess intrinsic phosphatase activity that
hydrolyzes the pyrophosphate released during nucleotide
polymerization. This domain belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 243
Score = 26.9 bits (60), Expect = 7.1
Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
Query: 96 PHDISIV--PGNHDA 108
P I I+ PGNHDA
Sbjct: 79 PSHIKIIIIPGNHDA 93
>gnl|CDD|176679 cd07256, HPCD_C_class_II, C-terminal domain of
3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which
catalyses the second step in the degradation of
4-hydroxyphenylacetate to succinate and pyruvate;
belongs to the type I class II family of extradiol
dioxygenases. This subfamily contains the C-terminal,
catalytic, domain of HPCD. HPCD catalyses the second
step in the degradation of 4-hydroxyphenylacetate to
succinate and pyruvate. The aromatic ring of
4-hydroxyphenylacetate is opened by this dioxygenase to
yield the 3,4-diol product,
2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is
a homotetramer and each monomer contains two
structurally homologous barrel-shaped domains at the N-
and C-terminus. The active-site metal is located in the
C-terminal barrel and plays an essential role in the
catalytic mechanism. Most extradiol dioxygenases contain
Fe(II) in their active site, but HPCD can be activated
by either Mn(II) or Fe(II). These enzymes belong to the
type I class II family of extradiol dioxygenases. The
class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases
belong to a different superfamily.
Length = 161
Score = 26.9 bits (60), Expect = 7.7
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
Query: 89 WLRSIGNPHDISIVPGN-----HDAY 109
WL G HD ++ GN H A+
Sbjct: 44 WLHRKGGVHDTALTGGNGPRLHHVAF 69
>gnl|CDD|34965 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 26.6 bits (58), Expect = 8.7
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 87 THWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAW 121
H G P + ++ G K +LH W
Sbjct: 20 KHLNEEDGGPDSLLVMLGKSQDVNPYQKNTALHIW 54
>gnl|CDD|144656 pfam01142, TruD, tRNA pseudouridine synthase D (TruD). TruD is
responsible for synthesis of pseudouridine from
uracil-13 in transfer RNAs. The structure of TruD
reveals an overall V-shaped molecule which contains an
RNA-binding cleft.
Length = 336
Score = 26.4 bits (59), Expect = 9.9
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 11/36 (30%)
Query: 209 FGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKK 244
FG QRF G D G+ HL +K + K
Sbjct: 158 FGEQRF-------GRD----GNNHLVGKAILKGDWK 182
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.136 0.421
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,945,297
Number of extensions: 208031
Number of successful extensions: 529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 501
Number of HSP's successfully gapped: 57
Length of query: 309
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 215
Effective length of database: 4,232,491
Effective search space: 909985565
Effective search space used: 909985565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)