RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|255764495|ref|YP_003065022.2| putative phosphoesterase
protein [Candidatus Liberibacter asiaticus str. psy62]
(309 letters)
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold,
swapped-dimer, hydrolase; HET: BTB; 1.60A {Mycobacterium
tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Length = 330
Score = 63.0 bits (152), Expect = 7e-11
Identities = 43/252 (17%), Positives = 73/252 (28%), Gaps = 43/252 (17%)
Query: 10 FVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDI--LLHNVDH 67
+VL HISD HL +R+ G V+ + + L+ + D
Sbjct: 26 YVLLHISDTHLIGGD-------RRLYGAVD---------ADDRLGELLEQLNQSGLRPDA 69
Query: 68 VSITGDIVNF--TCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYI 125
+ TGD+ + + ++ V GNHD K A
Sbjct: 70 IVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNHDDRAELRKFLLDEAP-SMA 128
Query: 126 TSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKK 185
D C L + P +G Q ++ L
Sbjct: 129 PLDRVCMIDGLRIIVLDT--------------SVPGHHHGEIRASQLGWLAEELATPAPD 174
Query: 186 GFFRIIMMHHPPVLDTSSLYNRM--FGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEK 243
G + +HHPP+ + + +++ IL GH H ++
Sbjct: 175 GTI--LALHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRAILAGHLHYSTNATFVG-- 230
Query: 244 KLIPVVGIASAS 255
IPV ++
Sbjct: 231 --IPVSVASATC 240
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP,
manganese, replication; HET: DA; 2.20A {Pyrococcus
furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Length = 333
Score = 60.2 bits (144), Expect = 6e-10
Identities = 34/235 (14%), Positives = 60/235 (25%), Gaps = 21/235 (8%)
Query: 12 LAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSIT 71
AH++DIHL G +H +++ E + + NVD + I
Sbjct: 3 FAHLADIHL---------------GYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIA 47
Query: 72 GDIV---NFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSD 128
GD+ + + + + GNHD G +L +
Sbjct: 48 GDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGNHDRTQRGPSVLNLLEDFGLVYVI 107
Query: 129 TTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFF 188
+ R Y A ++L++ +
Sbjct: 108 GMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLFRPTDN 167
Query: 189 RIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEK 243
I+M+H + + F EG GH H
Sbjct: 168 AILMLHQGVREVSEARGEDYF---EIGLGDLPEGYLYYALGHIHKRYETSYSGSP 219
>2q8u_A Exonuclease, putative; TM1635, structural genomics, joint center
for structural genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 2.20A {Thermotoga maritima
MSB8}
Length = 336
Score = 58.1 bits (139), Expect = 2e-09
Identities = 36/225 (16%), Positives = 70/225 (31%), Gaps = 19/225 (8%)
Query: 12 LAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSIT 71
+ H SD HL + R + K+ + ++ + VD + +T
Sbjct: 21 ILHTSDWHLGVTSWTSSRPVDR------------REELKKALDKVVEEAEKREVDLILLT 68
Query: 72 GDIVNFTCN---REIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSD 128
GD+++ N + +L+ + + ++PGNHD + + IT
Sbjct: 69 GDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNHDWKGLKLFGNFVTSISSDITFV 128
Query: 129 TTCSTGKKLFPYLRIRNNIALIGCSTA-IATPPFSANGYFGQEQAHATSKLLRKANKKGF 187
+ + + + + ++ + G F +KL +A KK
Sbjct: 129 MSF---EPVDVEAKRGQKVRILPFPYPDESEALRKNEGDFRFFLESRLNKLYEEALKKED 185
Query: 188 FRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTH 232
F I M H + + D GH H
Sbjct: 186 FAIFMGHFTVEGLAGYAGIEQGREIIINRALIPSVVDYAALGHIH 230
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.10A {Thermus
thermophilus} SCOP: d.159.1.6
Length = 228
Score = 57.5 bits (137), Expect = 4e-09
Identities = 20/177 (11%), Positives = 43/177 (24%), Gaps = 10/177 (5%)
Query: 56 LINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKE 115
+ D +++ G+++ + + + VPG DA I
Sbjct: 24 FVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFR-ILSEAHLPTAYVPGPQDAPIWEYLR 82
Query: 116 KSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHAT 175
++ + + + R + G IA + A
Sbjct: 83 EAANVELVH------PEMRNVHETFTFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVA 136
Query: 176 SKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTH 232
L+ + + I + H G +I L+L
Sbjct: 137 EYRLKALWELKDYPKIFLFHTMPYHK---GLNEQGSHEVAHLIKTHNPLLVLVAGKG 190
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase,
metalloprotein, metallophosphoesterase, protein
structure initiative; 1.70A {Danio rerio} SCOP:
d.159.1.12
Length = 322
Score = 53.6 bits (127), Expect = 5e-08
Identities = 41/284 (14%), Positives = 77/284 (27%), Gaps = 63/284 (22%)
Query: 9 MFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANL--LINDILLHNVD 66
+F I+D+ + N+ R++Y+ L + V
Sbjct: 5 VFTFGLIADVQYADIEDGE-----------NYLRTRRRYYRGSADLLRDAVLQWRRERVQ 53
Query: 67 HVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVP-----GNHDAY-----------I 110
V GDI++ NR S L ++ D V GNH+ Y +
Sbjct: 54 CVVQLGDIID-GHNRRRDASDRALDTVMAELDACSVDVHHVWGNHEFYNFSRPSLLSSRL 112
Query: 111 SGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNN------------------------ 146
+ A+ D I D + + +
Sbjct: 113 NSAQRTGTDTGSDLIGDDIYAYEFSPAPNFRFVLLDAYDLSVIGREEESEKHTHSWRILT 172
Query: 147 --------IALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPV 198
+ L S + NG F ++Q +L ++ K +I H P
Sbjct: 173 QHNHNLQDLNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVH 232
Query: 199 LDTSSLYNRMFGIQRFQKMIW-HEGADLILHGHTHLNSLHWIKN 241
+ + + ++ H+ + GH H +
Sbjct: 233 PCAADPICLAWNHEAVLSVLRSHQSVLCFIAGHDHDGGRCTDSS 276
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase,
phosphatase, metal ION; 1.90A {Enterobacter aerogenes}
SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Length = 274
Score = 52.8 bits (125), Expect = 1e-07
Identities = 43/250 (17%), Positives = 82/250 (32%), Gaps = 36/250 (14%)
Query: 12 LAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSIT 71
LAHISD H +++ G ++ + + V+ L + L D V ++
Sbjct: 3 LAHISDTHFR-------SRGEKLYGFIDVN----AANADVVSQL---NALRERPDAVVVS 48
Query: 72 GDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKDYITSDTTC 131
GDIVN E + L S+ P + ++PGNHD + +
Sbjct: 49 GDIVNCGRPEEYQVARQILGSLNYP--LYLIPGNHDDKALFLEYLQPLCPQLGSD----- 101
Query: 132 STGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRII 191
+R + ++ ++ G+ E L + K I
Sbjct: 102 ------ANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDKPAT--I 153
Query: 192 MMHHPPVLDTSSLYNRMFGIQRFQKMIW---HEGADLILHGHTHLNSLHWIKNEKKLIPV 248
MHHPP+ ++ + + + + I GH H ++ + +
Sbjct: 154 FMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQ----ALI 209
Query: 249 VGIASASQKV 258
+ +V
Sbjct: 210 STLPGTVHQV 219
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein structure
initiative, PSI-2; 1.90A {Candida albicans SC5314} SCOP:
d.114.1.1 d.159.1.2
Length = 557
Score = 41.2 bits (96), Expect = 3e-04
Identities = 31/234 (13%), Positives = 74/234 (31%), Gaps = 24/234 (10%)
Query: 14 HISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGD 73
H +D H YS + G + + + + + +L+ + D G
Sbjct: 20 HTTDTHGWYSGHINQPLYHANWGDF---ISFTTHMRRIAHSRNQDLLLIDSGDRHDGNG- 75
Query: 74 IVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAY------------ISGAKEKSLHAW 121
+ + T + + T +D+ + GNH+ Y ++ ++K + +
Sbjct: 76 LSDITSPNGLKS-TPIFIKQD--YDL-LTIGNHELYLWENSKQEYETVVNHFQDKYVCSN 131
Query: 122 KDYITSDTTCSTGKKLFPYLRI-RNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLR 180
D + + Y I ++ F++ +
Sbjct: 132 VDIRLDNGLFVPLGLKYKYFTTPIRGIRVMAFGFLFDFKRFNSGTRVTPMAETIHEPWFQ 191
Query: 181 KANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLN 234
+A K II++ H P+ + ++ Q ++ + GH+H+
Sbjct: 192 EALKHEVDLIIIVGHTPISHNWGEFYQVH--QYLRQFFP-DTIIQYFGGHSHIR 242
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown
function, NPPSFA, national project on protein structural
and functional analyses; 1.60A {Aquifex aeolicus VF5}
SCOP: d.159.1.6
Length = 260
Score = 39.8 bits (91), Expect = 8e-04
Identities = 30/232 (12%), Positives = 65/232 (28%), Gaps = 40/232 (17%)
Query: 29 LSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNF----------- 77
+ P++++ + N+ ++ L I D + + G+I+
Sbjct: 3 IMPRKVLAIKNFKER------FDLLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAH 56
Query: 78 -------------TCNREIFTSTHWLRSIGN-PHDISIVPGNHDAYISGAKEKSLHAWKD 123
+ I T + R IG +VPG +DA + + A
Sbjct: 57 LARREPNRKVIHENEHYIIETLDKFFREIGELGVKTFVVPGKNDAPLKIFLRAAYEAETA 116
Query: 124 YITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKAN 183
Y + + R +IG + F + + + L
Sbjct: 117 Y------PNIRVLHEGFAGWRGEFEVIGFGGLLTEHEFEEDFVLKYPRWYVEYILKFVNE 170
Query: 184 KKGFFRIIMMHHPPVLDTSSLYNRMFGI---QRFQKMIWHEGADLILHGHTH 232
K + + + PP+ + +I ++ + GH
Sbjct: 171 LKPRRLVTIFYTPPIGEFVDRTPEDPKHHGSAVVNTIIKSLNPEVAIVGHVG 222
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase
COG0622); structural genomics, predicted
phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus
pneumoniae TIGR4} SCOP: d.159.1.7
Length = 176
Score = 38.2 bits (88), Expect = 0.002
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 15/104 (14%)
Query: 186 GFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKL 245
G +II H ++ F Q+ E A + L+GH H+ S
Sbjct: 76 GSTKIIQTHGHL-------FDINFNFQKLDYWAQEEEAAICLYGHLHVPSAWLEGK---- 124
Query: 246 IPVVGIASASQKVHSNKPQASYNLFYIEKKN---EYWTLEGKRY 286
I + S SQ + + Y I+ ++ T + + Y
Sbjct: 125 ILFLNPGSISQPRGTI-RECLYARVEIDDSYFKVDFLTRDHEVY 167
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle,
hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Length = 342
Score = 38.0 bits (87), Expect = 0.003
Identities = 35/248 (14%), Positives = 77/248 (31%), Gaps = 26/248 (10%)
Query: 63 HNVDHVSITGDIVN-FTCNREI--FTSTHWLRSIGNPHDISIVPGNHD------AYISGA 113
H+ +TGDI + E+ F ++ + ++ GNH+
Sbjct: 104 FGEGHMVMTGDIFDRGHQVNEVLWFMYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYVH 163
Query: 114 KEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAI---ATPPFSANGYFGQE 170
+ + + S ++ +LR +N I I + + + + +
Sbjct: 164 QRYDIATTLINRPYNKLYSADTEIGQWLRSKNTIIKINDVLYMHGGISSEWISRELTLDK 223
Query: 171 Q---AHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLIL 227
A +K+ K + ++ F ++ H + I+
Sbjct: 224 ANALYRANVDASKKSLKADDLLNFLFFGNGPTWYRGYFSETFTEAELDTILQHFNVNHIV 283
Query: 228 HGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKNEY-WTLEGKRY 286
GHT + + + K V+ + S+ + +E +G R
Sbjct: 284 VGHTSQERVLGLFHNK----VIAVDSSI--KVGKSGEL----LLLENNRLIRGLYDGTRE 333
Query: 287 TLSPDSLS 294
TL +SL+
Sbjct: 334 TLQENSLN 341
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis,
sulfur oxidation pathway, Cys S-thiosulfonate,
hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A*
2wde_A 2wdf_A
Length = 562
Score = 36.0 bits (82), Expect = 0.012
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 19/124 (15%)
Query: 134 GKKLFPYLRIRN----NIALIGCS---TAIATPPFSANGYFGQEQAHATSKLLRKANKKG 186
G LFP RI +A++G S ++ P G + + KA +G
Sbjct: 195 GDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARAEG 254
Query: 187 FFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLI 246
++++ H + ++L R+ GI DLIL GHTH + + K I
Sbjct: 255 ANAVVLLSHNGMQLDAALAERIRGI------------DLILSGHTHDLTPRPWRVGKTWI 302
Query: 247 PVVG 250
Sbjct: 303 VAGS 306
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A
{Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Length = 426
Score = 34.5 bits (78), Expect = 0.030
Identities = 33/204 (16%), Positives = 62/204 (30%), Gaps = 15/204 (7%)
Query: 34 IIGLVNWHFNRKKYFSKEVANLLINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSI 93
+IG + + + N +L D + N T +
Sbjct: 131 LIGDIGQTHDSNTTLTHYEQNSAKGQAVLFMGDLS--YSNRWPNHDNNRWDTWGRFSERS 188
Query: 94 GNPHDISIVPGNHD---AYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRNNIALI 150
GNH+ A G + + Y T +G L+ Y R + +I
Sbjct: 189 VAYQPWIWTAGNHEIDYAPDIGEYQPFVPFTNRYPTPHEASGSGDPLW-YAIKRASAHII 247
Query: 151 GCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFG 210
S+ + Q + L K N+ +I++ H P+ ++ +
Sbjct: 248 VLSS-------YSGFVKYSPQYKWFTSELEKVNRSETPWLIVLVHAPLYNSYEAHYMEGE 300
Query: 211 IQR--FQKMIWHEGADLILHGHTH 232
R F+ + D++ GH H
Sbjct: 301 AMRAIFEPYFVYYKVDIVFSGHVH 324
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme,
hydrolase, domain movement; HET: ATP; 1.70A {Escherichia
coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A
1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Length = 516
Score = 34.1 bits (77), Expect = 0.036
Identities = 48/266 (18%), Positives = 81/266 (30%), Gaps = 28/266 (10%)
Query: 7 TIMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNVD 66
T + H +D H F + GL KEVA + +LL D
Sbjct: 6 TYKITVLHTNDHH-----GHFWRNEYGEYGLAAQKTLVDGIR-KEVAAEGGSVLLLSGGD 59
Query: 67 HVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHD---------AYISGAKEKS 117
+ + F + +G +D + GNH+ AK
Sbjct: 60 INTGVP-ESDLQDAEPDF---RGMNLVG--YDA-MAIGNHEFDNPLTVLRQQEKWAKFPL 112
Query: 118 LHAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTA----IATPPFSANGYFGQEQAH 173
L A + T K + R IA+IG +T I P + + F +
Sbjct: 113 LSA--NIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDDTAKIGNPEYFTDIEFRKPADE 170
Query: 174 ATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHL 233
A + + II H D + G + + +I+ GH+
Sbjct: 171 AKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQD 230
Query: 234 NSLHWIKNEKKLIPVVGIASASQKVH 259
+N+K++ V G + +
Sbjct: 231 PVCMAAENKKQVDYVPGTPCKPDQQN 256
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase,
manganese, protein transport; 2.00A {Mus musculus} SCOP:
d.159.1.7 PDB: 1z2x_A 1w24_A 2r17_A
Length = 192
Score = 34.0 bits (77), Expect = 0.051
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 13/110 (11%)
Query: 188 FRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIP 247
F+I ++H + + D+++ GHTH +N K
Sbjct: 90 FKIGLIHGHQ-------VIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHEN--KFYI 140
Query: 248 VVGIASASQKVHSNKPQASYNLFYIEKKNEYWTLEGKRYTLSPDSLSIQK 297
G A+ + S+ L I+ T+ Y L D + +++
Sbjct: 141 NPGSATGAYNALETNIIPSFVLMDIQAS----TVVTYVYQLIGDDVKVER 186
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
d.159.1.5 PDB: 2gju_A
Length = 252
Score = 33.4 bits (75), Expect = 0.073
Identities = 20/216 (9%), Positives = 57/216 (26%), Gaps = 33/216 (15%)
Query: 63 HNVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWK 122
+ ++ I G+IV ++ + ++ I+ G +D I+ + +
Sbjct: 32 YEIEKYYILGNIVGL--FPYPKEVIEVIKDLTKKENVKIIRGKYDQIIAMSDPHATDPG- 88
Query: 123 DYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKA 182
I + + G E L
Sbjct: 89 -----------------------YIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYL 125
Query: 183 N-KKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMI-WHEGADLILHGHTHLNSLHWIK 240
K G + ++ P+ ++ ++ + ++++ + +
Sbjct: 126 VDKIGGNEVFGVYGSPINPFDGEVLAEQPTSYYEAIMRPVKDYEMLIVASPM----YPVD 181
Query: 241 NEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKN 276
+ VV S +A++ L ++
Sbjct: 182 AMTRYGRVVCPGSVGFPPGKE-HKATFALVDVDTLK 216
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase
bifunctional periplasmic...; APC63187.2; HET: EPE TAM;
2.43A {Klebsiella pneumoniae subsp}
Length = 339
Score = 32.2 bits (72), Expect = 0.14
Identities = 39/315 (12%), Positives = 85/315 (26%), Gaps = 46/315 (14%)
Query: 7 TIMFVLAHISDIHLSYSP-SFFELSPKRIIGLVNWHFNRKKYFSKEVANLLINDILLHNV 65
T+ + +D+H + +++ + GLV R ++ + N +L+ N
Sbjct: 6 TVDLRIMETTDLHSNMMDFDYYKDAATEKFGLV-----RTASLIEQARAEVKNSVLVDNG 60
Query: 66 DHVSITGDIVNFTCNREIFTSTHW--LRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKD 123
D + + + ++ + + +++ + GNH+ A
Sbjct: 61 DVIQGSP-LGDYMAAKGLKEGDVHPVYKAMNTLNYAVGNLGNHEFNYGLDFLHKALAGAK 119
Query: 124 YITSD---TTCSTGKKLFPYLRIRN-------------NIALIGCST---AIATPPFSAN 164
+ + TGK +F I++ I IG
Sbjct: 120 FPYVNANIIDAKTGKPMFTPYLIQDTRVVDSDGQIHTLRIGYIGFVPPQIMTWDKANLNG 179
Query: 165 GYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGAD 224
+ K + + KG H + + ++ G D
Sbjct: 180 KVTVNDITETARKYIPEMRAKGADXXXXXAHSGLSADPYQAMAENSVYYLSQV---PGVD 236
Query: 225 LILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKP--QASYNL-------FYIEKK 275
I+ GH H + + I IA + P +
Sbjct: 237 AIMFGHAH---AVFPGKDFANIKGADIAKGTLN---GVPAVMPGMWGDHLGVVDLVLNND 290
Query: 276 NEYWTLEGKRYTLSP 290
+ W + + P
Sbjct: 291 SGKWQVTQSKAEARP 305
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich,
structural genomics, structural genomics consortium,
SGC, protein transport; 2.20A {Cryptosporidium parvum}
SCOP: d.159.1.7
Length = 215
Score = 30.1 bits (67), Expect = 0.60
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 205 YNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQ 264
++ D+++ GHTH + + L P G A+ + +
Sbjct: 124 VLPWDDPGSLEQWQRRLDCDILVTGHTHKLRVFEKNGKLFLNP--GTATGAFSALTPDAP 181
Query: 265 ASYNLFYIEKKNEYWTLEGKRYTLSPDSLSIQK 297
S+ L ++ + Y L ++
Sbjct: 182 PSFMLMALQGN----KVVLYVYDLRDGKTNVAM 210
Score = 27.4 bits (60), Expect = 4.3
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 64 NVDHVSITGDIVNFTCNREIFTSTHWLRSIGNPHDISIVPGNHDAYISGAKEKSLHAWKD 123
+++V TG++ C++E L++I ++ IV G+ D+ I +S + +
Sbjct: 55 KINYVLCTGNV----CSQEYV---EMLKNIT--KNVYIVSGDLDSAIFNPDPESNGVFPE 105
Query: 124 YIT 126
Y+
Sbjct: 106 YVV 108
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 29.9 bits (66), Expect = 0.74
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 14/134 (10%)
Query: 164 NGYFG----QEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIW 219
G+ G +Q K+ +GF I+ L S+L + +F + +
Sbjct: 20 AGHVGFDSLPDQLV------NKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPAT 73
Query: 220 HEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKNEYW 279
H + L +T+ ++ + ++ VG K S KP +I+ + E +
Sbjct: 74 HTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE----FIDAQFEAY 129
Query: 280 TLEGKRYTLSPDSL 293
E + +
Sbjct: 130 LQEELKIRRVLHTY 143
>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural
genomics, PSI, protein structure initiative; 2.90A
{Streptococcus mutans} SCOP: d.126.1.6
Length = 377
Score = 29.6 bits (66), Expect = 0.96
Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 13/103 (12%)
Query: 8 IMFVLAHISDIHLSYSPSFFELSPKRIIGLVNWHFNR------KKYFSKEVANLLINDIL 61
I + D + F ++ K + V+W FN YF + L+ +
Sbjct: 86 IRIIEMTNDDAWIRDCGPTFLVNDKGDLRAVDWEFNAWGGLVDGLYFPWDQDALVARKVC 145
Query: 62 LHNVDHVSITGDIVNFTCNRE-------IFTSTHWLRSIGNPH 97
T D V + + T L NPH
Sbjct: 146 EIEGVDSYKTKDFVLEGGSIHVDGEGTVLVTEMCLLHPSRNPH 188
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase;
phosphoglyerate mutase, SH3 domain binding, structural
genomics, TBSGC; 1.70A {Mycobacterium tuberculosis}
SCOP: c.60.1.1
Length = 265
Score = 29.1 bits (64), Expect = 1.5
Identities = 7/75 (9%), Positives = 22/75 (29%), Gaps = 2/75 (2%)
Query: 168 GQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLIL 227
GQ +A + +L+ + + ++ T++ + + + +
Sbjct: 35 GQAEAVRSGELIAEHDLL--PDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERH 92
Query: 228 HGHTHLNSLHWIKNE 242
+G K
Sbjct: 93 YGALQGLDKAETKAR 107
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase,
PSI, protein structure initiative, midwest center for
structural genomics, MCSG; 2.25A {Escherichia coli}
SCOP: d.159.1.7
Length = 208
Score = 29.0 bits (64), Expect = 1.5
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 56 LINDILLHNVDHVSITGDIVNFTCNREIFTSTHWLRSI----GNPHDISIVPGNHDAYI 110
++ + I GD++N + + + H + V GN D+ +
Sbjct: 44 VLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVIAVRGNCDSEV 102
Score = 28.7 bits (63), Expect = 2.0
Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 11/108 (10%)
Query: 187 FFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLI 246
F I +L+ L+ + + + D++++GHTHL I
Sbjct: 108 HFPITAPWQQVLLEKQRLFLTHGHLFGPENLPALNQNDVLVYGHTHLPVAEQRGE----I 163
Query: 247 PVVGIASASQKVHSNKPQASYNLFYIEKKNEYWTLEG----KRYTLSP 290
S S N SY + + + L + ++P
Sbjct: 164 FHFNPGSVSIPKGGNPA--SYGMLDNDVLSVI-ALNDQSIIAQVAINP 208
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase,
allosteric enzyme, enzyme thermostability; HET: COZ CIT;
3.4A {Bacillus subtilis}
Length = 363
Score = 28.3 bits (62), Expect = 2.0
Identities = 12/109 (11%), Positives = 27/109 (24%), Gaps = 1/109 (0%)
Query: 147 IALIGCSTAIATPPFSANGYFGQEQAHATSKLLRKANKKGFFRIIMMHHPPVLDTSSLYN 206
+ + P + L++ +KG R++ H
Sbjct: 204 LGTMKGPLHGGAPSAVTKMLEDIGEKEHAEAYLKEKLEKGE-RLMGFGHRVYKTKDPRAE 262
Query: 207 RMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKNEKKLIPVVGIASAS 255
+ + + + L K +KL V +A+
Sbjct: 263 ALRQKAEEVAGNDRDLDLALHVEAEAIRLLEIYKPGRKLYTNVEFYAAA 311
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.8
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 29/55 (52%)
Query: 242 EKKLIPVVGIASASQKVHSNKPQASYNLFYIEKKNEYWTLEGKRYTLSPDSLSIQ 296
EK+ A +K+ QAS L Y + +P +L+I+
Sbjct: 18 EKQ---------ALKKL-----QASLKL-YADDS-------------AP-ALAIK 43
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue,
structural genomics, PSI- 2, protein structure
initiative; NMR {Thermotoga maritima}
Length = 178
Score = 27.9 bits (61), Expect = 2.9
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 9/54 (16%)
Query: 188 FRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHWIKN 241
I M H + ++ +++E +IL GHTH
Sbjct: 103 VTIGMCHGWGA---------PWDLKDRLLKVFNEKPQVILFGHTHEPEDTVKAG 147
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest
center for structural genomics, MCSG; 2.40A
{Streptococcus pneumoniae TIGR4} SCOP: c.135.1.1
Length = 267
Score = 27.4 bits (60), Expect = 4.7
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 1/105 (0%)
Query: 119 HAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQE-QAHATSK 177
HA D S + I+++IA+ T I N +F Q T+
Sbjct: 67 HAPIFRPIKDLLASRPQNQIYIDLIKHDIAVYVSHTNIDIVENGLNDWFCQMLGIEETTY 126
Query: 178 LLRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEG 222
L ++G RI + + + ++F + + + + E
Sbjct: 127 LQETGPERGIGRIGNIQPQTFWELAQQVKQVFDLDSLRMVHYQED 171
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase;
HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3
d.81.1.1
Length = 337
Score = 26.6 bits (58), Expect = 7.0
Identities = 13/124 (10%), Positives = 34/124 (27%), Gaps = 10/124 (8%)
Query: 119 HAWKDYITSDTTCSTGKKLFPYLRIRNNIALIGCSTAIATPPFSANGYFGQEQAHATSKL 178
I + P ++ +I + + + T + + + T
Sbjct: 178 GPINAIIPNPPK--LPSHHGPDVKTVLDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDD 235
Query: 179 LRKANKKGFFRIIMMHHPPVLDTSSLYNRMFGIQRFQKMIWHEGADLILHGHTHLNSLHW 238
+ + I++ + T+ + + K + DL S+
Sbjct: 236 IIDVFEDTPRVILISAEDGLTSTAEIME-------YAKELGRSRNDLFE-IPVWRESITV 287
Query: 239 IKNE 242
+ NE
Sbjct: 288 VDNE 291
>2z8x_A Lipase; beta roll, calcium binding protein, RTX protein, hydrolase;
1.48A {Pseudomonas SP} PDB: 2z8z_A 2zj6_A 2zj7_A
Length = 617
Score = 26.5 bits (58), Expect = 8.7
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 56 LINDILLHNVDHVSITGDIVNFTCNREIFTSTHW 89
+ +H+ S T +IV+F + + ST W
Sbjct: 267 TGASVGVHDAPKESATDNIVSFN---DHYASTAW 297
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.136 0.421
Gapped
Lambda K H
0.267 0.0464 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,809,764
Number of extensions: 128164
Number of successful extensions: 438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 45
Length of query: 309
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 217
Effective length of database: 3,462,782
Effective search space: 751423694
Effective search space used: 751423694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.0 bits)