HHsearch alignment for GI: 255764496 and conserved domain: COG1948
>COG1948 MUS81 ERCC4-type nuclease [DNA replication, recombination, and repair].
Probab=98.60 E-value=9.7e-08 Score=75.34 Aligned_cols=131 Identities=25% Similarity=0.391 Sum_probs=83.7
Q ss_pred CCCCCEEEEEC------CHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEECCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 57984899809------858999999999975887787189997187767663489817983488579989999999887
Q gi|255764496|r 461 PSWPDVVILDG------GKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLR 534 (616)
Q Consensus 461 ~~~PDLilIDG------GkgQln~a~~vl~~l~i~~~i~viglaK~~~r~~~~e~~~~~~~~~i~l~~~~~~l~~Lq~iR 534 (616)
T Consensus 98 y~rpvliVegd~~~~~~~~i~~~av~~al~s~~vdfg~---------------~vi~t~~~~~-----Ta~~i~~la~re 157 (254)
T COG1948 98 YERPVLIVEGDDSFSRRPKIHPNAVRGALASLAVDFGL---------------PVIWTRSPEE-----TAELIHELARRE 157 (254)
T ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCC---------------EEEEECCHHH-----HHHHHHHHHHHH
T ss_conf 78537999746454322446778999999998762485---------------1798488889-----999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHCC----CCHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 87788788989986432147----71004888798999999998088898993898888627899989999999985478
Q gi|255764496|r 535 DEAHRFAITTHRKRRKKAAY----SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 (616)
Q Consensus 535 DEaHRFAi~~hRk~r~k~~~----S~Ld~I~GIG~k~~~~Ll~~Fgs~~~i~~As~eeL~~v~gi~~~~A~~I~~~l~~~ 610 (616)
T Consensus 158 q~e~~r~v~~~~~~~~~t~~e~q~~il~s~pgig~~~a~~ll~~fgS~~~~~tas~~eL~~v~gig~k~A~~I~~~~~t~ 237 (254)
T COG1948 158 QEERKRSVNPHGKKKAKTLKELQLYILESIPGIGPKLAERLLKKFGSVEDVLTASEEELMKVKGIGEKKAREIYRFLRTE 237 (254)
T ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHCH
T ss_conf 77524555655432224557899999970899648999999998568887765599999774484688999999998344
Q ss_pred C
Q ss_conf 6
Q gi|255764496|r 611 T 611 (616)
Q Consensus 611 ~ 611 (616)
T Consensus 238 ~ 238 (254)
T COG1948 238 Y 238 (254)
T ss_pred H
T ss_conf 4