HHsearch alignment for GI: 255764496 and conserved domain: PRK00116
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed.
Probab=97.54 E-value=0.00013 Score=52.79 Aligned_cols=62 Identities=19% Similarity=0.389 Sum_probs=52.3
Q ss_pred HHHHHCCCCHHCCCCCCHHHHHHHHHHHC---CHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 64321477100488879899999999808---889899389888862789998999999998547
Q gi|255764496|r 548 RRKKAAYSPLDEINGIGPLRKRLLLQSFG---TVKMISRSSPETLASIEGISKKIACKIYNHFHK 609 (616)
Q Consensus 548 ~r~k~~~S~Ld~I~GIG~k~~~~Ll~~Fg---s~~~i~~As~eeL~~v~gi~~~~A~~I~~~l~~ 609 (616)
T Consensus 66 ~~Er~~F~~Li~V~GIGpK~AL~ILs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~ELk~ 130 (198)
T PRK00116 66 KEERELFRLLISVSGVGPKLALAILSGLSPEELAQAIANGDIKALTKVPGVGKKTAERIVLELKD 130 (198)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 89999999985668857899998870299999999998589999706889788999999999998