HHsearch alignment for GI: 255764496 and conserved domain: PRK00116

>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed.
Probab=97.54  E-value=0.00013  Score=52.79  Aligned_cols=62  Identities=19%  Similarity=0.389  Sum_probs=52.3

Q ss_pred             HHHHHCCCCHHCCCCCCHHHHHHHHHHHC---CHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf             64321477100488879899999999808---889899389888862789998999999998547
Q gi|255764496|r  548 RRKKAAYSPLDEINGIGPLRKRLLLQSFG---TVKMISRSSPETLASIEGISKKIACKIYNHFHK  609 (616)
Q Consensus       548 ~r~k~~~S~Ld~I~GIG~k~~~~Ll~~Fg---s~~~i~~As~eeL~~v~gi~~~~A~~I~~~l~~  609 (616)
T Consensus        66 ~~Er~~F~~Li~V~GIGpK~AL~ILs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~ELk~  130 (198)
T PRK00116         66 KEERELFRLLISVSGVGPKLALAILSGLSPEELAQAIANGDIKALTKVPGVGKKTAERIVLELKD  130 (198)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             89999999985668857899998870299999999998589999706889788999999999998