HHsearch alignment for GI: 255764496 and conserved domain: PRK00558

>PRK00558 uvrC excinuclease ABC subunit C; Validated.
Probab=100.00  E-value=0  Score=1506.65  Aligned_cols=591  Identities=45%  Similarity=0.767  Sum_probs=565.9

Q ss_pred             HHHCCCCCCEEEEECCCCCEEEEEECHHHHHHHHHHCCCC-CCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf             1258678862588869988889960125878887613788-778799999973444299982871999999998877618
Q gi|255764496|r    3 SEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSN-NHTHRITHMISQINNIRFTVTCTEVEALLLEANMIKRLK   81 (616)
Q Consensus         3 ~~~lP~~pGvY~~~~~~~~iiYvGKaknL~~Rv~syf~~~-~~~~k~~~l~~~~~~ie~~~t~~e~eAlilE~~lIk~~~   81 (616)
T Consensus        11 l~~lP~~PGvY~~~d~~~~viYVGKAknLk~Rv~sYF~~~~~~~~kt~~mv~~i~~ie~ivt~sE~EALlLE~~LIK~~k   90 (609)
T PRK00558         11 LKTLPDSPGVYRMKDANGTVIYVGKAKNLKNRVSSYFRKKNDLSPKTRAMVSQIADIEYIVTRSETEALLLENNLIKKYK   90 (609)
T ss_pred             HHHCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf             97689998558998899989998510526678898578988899789999998624789996998999999999986758


Q ss_pred             CCCEECCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf             72003364689772699808899845999812356784377037887899999999997301100355421247886624
Q gi|255764496|r   82 PRFNILLRDDKSFPYILITDKHKIPALYKHRDSSTIQGSYFGPFASVDAVEKTINSLQRTFFLRSCADSVFRHRTRPCLL  161 (616)
Q Consensus        82 P~yNi~LkDdk~yPyi~it~~~~~p~l~~~r~~~~~~~~yfGPf~~~~~~~~~l~~l~~~f~lR~C~~~~~~~~~~pCl~  161 (616)
T Consensus        91 P~YNilLkDDK~YPyi~it~~e~~Pri~~~R~~~~~~~~YfGPf~~~~~~~~~l~~l~k~F~lR~C~~~~~~~r~RPCL~  170 (609)
T PRK00558         91 PRYNILLRDDKSYPYIKITTNEKFPRLAITRGAKKDKGRYFGPYPSAGAVRETLNLLQKLFPLRTCEDSVFKNRTRPCLL  170 (609)
T ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
T ss_conf             98510124789983799977998730899957647897485786749999999999999835466774000347973224


Q ss_pred             HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--
Q ss_conf             455425866131220356655543234550387158999999999999863338888889999999986221100024--
Q gi|255764496|r  162 FQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIY--  239 (616)
Q Consensus       162 y~i~~C~gpC~~~is~~~Y~~~v~~~~~fL~G~~~~ii~~L~~~M~~aS~~l~FE~Aa~~RD~I~aL~~i~~~q~v~~--  239 (616)
T Consensus       171 y~I~rC~aPC~g~Is~~~Y~~~V~~~~~fL~G~~~~l~~~L~~~M~~aS~~l~FE~Aa~~RD~i~aL~~i~~~Q~v~~~~  250 (609)
T PRK00558        171 YQIGRCLAPCVGLVSKEEYAELVDEAKLFLQGKSDEVIKELEEKMEKASENLEFERAARLRDQIQALRRVQEKQKVSLAD  250 (609)
T ss_pred             HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCC
T ss_conf             43468566635757999999999999999827949999999999999997320667899999999999986356532588


Q ss_pred             -CCCCHHHHCCCCCEEEEEEEEEECCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCHHHEECCCCC-HHHHHH
Q ss_conf             -5420111000188347889984247454101135667778997898887775432137-8981231026888-578766
Q gi|255764496|r  240 -NRMDCFSLYHNKNLACIQTCFFHFGQNRGTCTFFLKTDSESTNAQILSYFLRQFYTDK-PCPENILLSEEAE-ETSLLE  316 (616)
Q Consensus       240 -~d~Dvi~i~~~~~~~~I~vl~vR~G~i~g~~~f~~~~~~~~~~~eil~~fI~qyY~~~-~iP~~Iiv~~~~~-~~~~l~  316 (616)
T Consensus       251 ~~d~DVi~i~~~~~~~~i~v~~vR~G~i~g~~~~~~~~~~~~~~~eil~~fl~q~Y~~~~~~P~eIlv~~~~~~d~~~l~  330 (609)
T PRK00558        251 LEDADVIAIAVDKGWACVQVFFIRGGKLLGRRSFFPKVPGDTELEEVLEAFIGQFYLDNRPIPKEILVPHELEIDKELLE  330 (609)
T ss_pred             CCCCEEEEEEECCCEEEEEEEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHH
T ss_conf             76540799997198589999998788996005677046677998999999999998417899976883576785689999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCE
Q ss_conf             65432013433321256552667899999999986554323343389999999875156643516999707443775404
Q gi|255764496|r  317 ISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEISHQMILKDFTKKFALPHIPKRIEIYDNSHIMGCSAV  396 (616)
Q Consensus       317 ~~L~~k~g~kV~i~~P~rG~kk~Ll~lA~~NA~~~l~~k~~~~~~~~~~l~~Lk~~L~L~~~p~rIE~fDiSh~~G~~~V  396 (616)
T Consensus       331 ~~L~~~~~~kv~i~~PkrG~Kk~Ll~lA~~NA~~~l~~~~~~~~~~~~~l~~L~~~L~L~~~p~rIE~fDiSh~~G~~~V  410 (609)
T PRK00558        331 EALSEKAGRKVKIRVPQRGDKKELLELAEKNAREALERKLSDQSTQTAALEELAEALGLPTLPKRIECFDISHIQGTDTV  410 (609)
T ss_pred             HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEE
T ss_conf             99985359946996188536899999999999999999987555699999999998388998878999824321687605


Q ss_pred             EEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHH
Q ss_conf             88888516872803232110244445541168998999999997753131112333333334545798489980985899
Q gi|255764496|r  397 GCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFPSWPDVVILDGGKGQL  476 (616)
Q Consensus       397 as~Vvf~~g~~~K~~YR~f~Ik~~~v~~~DD~~~m~Evi~RR~~r~~~~~~~l~~~~~~~~~~~~~~PDLilIDGGkgQl  476 (616)
T Consensus       411 gsmVvf~~g~~~K~~YRkf~Ik--~~~~~DDy~~M~Evl~RR~~r~~~e~--------------~~lPDLilIDGGkgQL  474 (609)
T PRK00558        411 ASMVVFEDGGPDKSEYRRYNIK--GITGGDDYAAMREVLTRRFSRLLKEF--------------AKLPDLILIDGGKGQL  474 (609)
T ss_pred             EEEEEEECCCCCHHHCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHCC--------------CCCCCEEEECCCHHHH
T ss_conf             8999997897276764711369--99998659999999999998887538--------------9999889954977899


Q ss_pred             HHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEE-CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC
Q ss_conf             99999999758877871899971877676634898-17983488579989999999887877887889899864321-47
Q gi|255764496|r  477 SAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFF-VKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-AY  554 (616)
Q Consensus       477 n~a~~vl~~l~i~~~i~viglaK~~~r~~~~e~~~-~~~~~~i~l~~~~~~l~~Lq~iRDEaHRFAi~~hRk~r~k~-~~  554 (616)
T Consensus       475 ~~a~~~l~~l~l~-~i~viglaK~~~r~~~~E~i~~~~~~~~i~l~~~s~~l~lLq~iRDEaHRFAi~~hR~~R~k~~~~  553 (609)
T PRK00558        475 NAAKEVLEELGLD-DIPVIGLAKGDERKAGTEELFFPDGGEPFSLPPNSPALYLLQRIRDEAHRFAITFHRQKRSKARLT  553 (609)
T ss_pred             HHHHHHHHHCCCC-CCCEEEEECCCCCCCCCEEEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             9999999976999-860899971687777740899789982554499998999999998729887999999975020025


Q ss_pred             CCHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf             71004888798999999998088898993898888627899989999999985478
Q gi|255764496|r  555 SPLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN  610 (616)
Q Consensus       555 S~Ld~I~GIG~k~~~~Ll~~Fgs~~~i~~As~eeL~~v~gi~~~~A~~I~~~l~~~  610 (616)
T Consensus       554 s~Ld~I~GIG~kr~~~Ll~~Fgs~~~i~~As~eeL~~v~Gi~~~~A~~I~~~l~~~  609 (609)
T PRK00558        554 SRLDDIPGIGPKRRKALLKHFGSLKAIKEASVEELAKVPGISKKLAEKIYEALHKK  609 (609)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf             71647899799999999997079999973899999648998999999999997059