HHsearch alignment for GI: 255764496 and conserved domain: PRK10430
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional.
Probab=94.26 E-value=0.25 Score=29.15 Aligned_cols=175 Identities=17% Similarity=0.130 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCC--CCCC--CCCCCCCCCCCCCCEEEEECCHHHH---HHHHHHHHHCCCCCCCCEEEE
Q ss_conf 11689989999999977531311--1233--3333334545798489980985899---999999997588778718999
Q gi|255764496|r 425 QDDCAMMRMVLERRFSQLIKNEE--NLNF--HPKKQEYSFPSWPDVVILDGGKGQL---SAAQGVLKKLNVENRITIISI 497 (616)
Q Consensus 425 ~DD~~~m~Evi~RR~~r~~~~~~--~l~~--~~~~~~~~~~~~PDLilIDGGkgQl---n~a~~vl~~l~i~~~i~vigl 497 (616)
T Consensus 7 VEDD~~v~~~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~-~lR~~~~~--~~VI~I 83 (239)
T PRK10430 7 VDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLP-VLHEAGCK--SDVIVI 83 (239)
T ss_pred EECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHH-HHHHHCCC--CEEEEE
T ss_conf 929899999999998518990899998999999999965799985899789999997899999-99985899--819999
Q ss_pred ECCCCCCCCCEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-CCCHHC---------------C
Q ss_conf 7187767663489817983488579989999999887877887889899864321-4-771004---------------8
Q gi|255764496|r 498 AKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRFAITTHRKRRKKA-A-YSPLDE---------------I 560 (616)
Q Consensus 498 aK~~~r~~~~e~~~~~~~~~i~l~~~~~~l~~Lq~iRDEaHRFAi~~hRk~r~k~-~-~S~Ld~---------------I 560 (616)
T Consensus 84 Ta~~d~~~v~~Al~~Ga~D-YLiKPf~-----~~rl~~~L~~y~~-~~~~l~~~~~~~Q~~iD~l~~~~~~~~~~~~~lP 156 (239)
T PRK10430 84 SSAADAATIKDSLHYGVVD-YLIKPFQ-----ASRFEEALTGWRQ-KKMALEKRQYYDQAELDQLIHGSSSNEQDPRRLP 156 (239)
T ss_pred EECCCHHHHHHHHHCCCHH-HEECCCC-----HHHHHHHHHHHHH-HHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 7268899999999839503-0489999-----9999999999999-9998545787899999999850578888766699
Q ss_pred CCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 88798999999998088898993898888627899989999999985478
Q gi|255764496|r 561 NGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYNHFHKN 610 (616)
Q Consensus 561 ~GIG~k~~~~Ll~~Fgs~~~i~~As~eeL~~v~gi~~~~A~~I~~~l~~~ 610 (616)
T Consensus 157 KGl~~~TL~~i~~~l~~~~~-~~~sa~eva~~~giSRvTaRRYLe~L~~~ 205 (239)
T PRK10430 157 KGLTPQTLRTLCQWIDAHQD-YEFSTDELANEVNISRVSCRKYLIWLVNC 205 (239)
T ss_pred CCCCHHHHHHHHHHHHHCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99999999999999982799-98469999988585298899999999868