HHsearch alignment for GI: 255764496 and conserved domain: PRK11617
>PRK11617 endonuclease V; Provisional.
Probab=96.58 E-value=0.0061 Score=40.76 Aligned_cols=109 Identities=18% Similarity=0.167 Sum_probs=63.6
Q ss_pred HHHCCCCCCCEEEEEECCCCCC-CCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH--HHHHHHHHCCCC
Q ss_conf 7515664351699970744377-5404888885168728032321102444455411689989999--999977531311
Q gi|255764496|r 371 KKFALPHIPKRIEIYDNSHIMG-CSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQDDCAMMRMVL--ERRFSQLIKNEE 447 (616)
Q Consensus 371 ~~L~L~~~p~rIE~fDiSh~~G-~~~Vas~Vvf~~g~~~K~~YR~f~Ik~~~v~~~DD~~~m~Evi--~RR~~r~~~~~~ 447 (616)
T Consensus 21 d~~~~~-~~~~VaGvDvSf~~~~~~~~Aa~Vvl~~p~l~vv-~~~~~~~~~~fPYIPG~LaFRE~p~ll~a~~~L----- 93 (223)
T PRK11617 21 DRLDKD-PPDLIAGADVGFEQGGEVTRAAMVLLKYPSLELV-EYQVARIATTMPYIPGFLSFREYPALLAAWEQL----- 93 (223)
T ss_pred CCCCCC-CCCEEEEEEEEEECCCCEEEEEEEEEECCCCEEE-EEEEEEEECCCCCCCCHHHHCCHHHHHHHHHHC-----
T ss_conf 789988-7638999988685699779999999988993699-999999743688566146560349999999962-----
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEC-CHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 123333333345457984899809-85899999999997588778718999718
Q gi|255764496|r 448 NLNFHPKKQEYSFPSWPDVVILDG-GKGQLSAAQGVLKKLNVENRITIISIAKG 500 (616)
Q Consensus 448 ~l~~~~~~~~~~~~~~PDLilIDG-GkgQln~a~~vl~~l~i~~~i~viglaK~ 500 (616)
T Consensus 94 -------------~~~PDvllvDG~Gi~HPRr~-GlAsHlGV~l~~PTIGVAK~ 133 (223)
T PRK11617 94 -------------SQKPDLVFVDGHGISHPRRL-GVASHFGLLVDVPTIGVAKK 133 (223)
T ss_pred -------------CCCCCEEEECCCCCCCCCCC-CHHHEEEEECCCCCCCCCCC
T ss_conf -------------77999999879754376241-61202455428783230053