HHsearch alignment for GI: 255764496 and conserved domain: PRK12311

>PRK12311 rpsB 30S ribosomal protein S2; Provisional.
Probab=91.83  E-value=1.1  Score=24.54  Aligned_cols=124  Identities=19%  Similarity=0.180  Sum_probs=67.3

Q ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf             57984899809858999999999975887787189997187767663489817983488579989999999887877887
Q gi|255764496|r  461 PSWPDVVILDGGKGQLSAAQGVLKKLNVENRITIISIAKGPKRSAGMEKFFVKKGEALVLNMRDPILYFIQRLRDEAHRF  540 (616)
Q Consensus       461 ~~~PDLilIDGGkgQln~a~~vl~~l~i~~~i~viglaK~~~r~~~~e~~~~~~~~~i~l~~~~~~l~~Lq~iRDEaHRF  540 (616)
T Consensus       157 ~~lPDlvfViD~~kE~iAV~EA~k-L----gIPvIaIvDTN~---------dP~~IdYpIPgNDDairsI~L~c~lia~A  222 (332)
T PRK12311        157 GGLPDLIFVIDTNKEDIAIQEAQR-L----GIPVAAIVDTNC---------DPKGITYLVPGNDDAGRAIALYCDLIARA  222 (332)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHH-C----CCCEEEEEECCC---------CCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             559998999689733899999998-0----979899973899---------98657756848655899999999999999


Q ss_pred             HHHHHH-HHHHHH-CC--C---CHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHCCCCCHHHHHHHHH
Q ss_conf             889899-864321-47--7---10048887989999999980888989938988886278999899999999
Q gi|255764496|r  541 AITTHR-KRRKKA-AY--S---PLDEINGIGPLRKRLLLQSFGTVKMISRSSPETLASIEGISKKIACKIYN  605 (616)
Q Consensus       541 Ai~~hR-k~r~k~-~~--S---~Ld~I~GIG~k~~~~Ll~~Fgs~~~i~~As~eeL~~v~gi~~~~A~~I~~  605 (616)
T Consensus       223 ~l~G~~~~~~~~g~d~g~~~~~~~~~~~~~~~~------~~~~~l~~p~g~-~ddl~ki~gvgp~~~~~ln~  287 (332)
T PRK12311        223 AIDGISRAQGDLGIDIGASEAPLAEELPAAQAP------EGFQGLAGPRGA-PDDLKKLTGVSGAIEKKLND  287 (332)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCH------HHHHCCCCCCCC-CCHHHHHCCCCHHHHHHHHH
T ss_conf             999998752002667554346731125643333------454212478898-42577715767889998501