HHsearch alignment for GI: 255764496 and conserved domain: TIGR00194
>TIGR00194 uvrC excinuclease ABC, C subunit; InterPro: IPR004791 Excinuclease ABC complex is involved in DNA replication, recombination and repair. This group defines the C subunit.; GO: 0009381 excinuclease ABC activity, 0006281 DNA repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=100.00 E-value=0 Score=758.75 Aligned_cols=573 Identities=39% Similarity=0.656 Sum_probs=525.2
Q ss_pred CHHHCCCCCCEEEEECCCCCEEEEEECHHHHHHHHHHCCCCC--CCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 912586788625888699888899601258788876137887--787999999734442999828719999999988776
Q gi|255764496|r 2 SSEQMPECPGVYQMLDIAGRVLYVGKAYNLQKRIKSYMHSNN--HTHRITHMISQINNIRFTVTCTEVEALLLEANMIKR 79 (616)
Q Consensus 2 ~~~~lP~~pGvY~~~~~~~~iiYvGKaknL~~Rv~syf~~~~--~~~k~~~l~~~~~~ie~~~t~~e~eAlilE~~lIk~ 79 (616)
T Consensus 4 ~~~~~p~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~ 83 (601)
T TIGR00194 4 KLKKLPDEPGCYLWKDRNGKVLYVGKAKNLKKRVKSYFRENNPRASAKTELLVKQIADIEYILTSNENEALLLEANLIKQ 83 (601)
T ss_pred CHHHCCCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHH
T ss_conf 20216677761566327871688402367888888865103454137899999877542100213503567777667753
Q ss_pred HCCCCEECCCCCCCCCEEEEECCCCCCEEEEEE--CCCCCCCEEEECCC-CHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 187200336468977269980889984599981--23567843770378-878999999999973011003554212478
Q gi|255764496|r 80 LKPRFNILLRDDKSFPYILITDKHKIPALYKHR--DSSTIQGSYFGPFA-SVDAVEKTINSLQRTFFLRSCADSVFRHRT 156 (616)
Q Consensus 80 ~~P~yNi~LkDdk~yPyi~it~~~~~p~l~~~r--~~~~~~~~yfGPf~-~~~~~~~~l~~l~~~f~lR~C~~~~~~~~~ 156 (616)
T Consensus 84 ~~p~~~~~l~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 163 (601)
T TIGR00194 84 YKPRYNVLLKDDKGYPYIYLTHSEKYPRLLLTRKKGLKKDKGKYFGPFPSNAFALRETLDLLLKLFPLRKCAKPVYHNRD 163 (601)
T ss_pred CCCCCCEEEECCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 07753236633776305886255432301111222201233320255544156789999999875545531001221257
Q ss_pred CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86624455425866131220356655543234550387158999999999999863338888889999999986221100
Q gi|255764496|r 157 RPCLLFQIKRCSGPCTGEISSEKYMEFVHEAKKFLSGGNHNLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHND 236 (616)
Q Consensus 157 ~pCl~y~i~~C~gpC~~~is~~~Y~~~v~~~~~fL~G~~~~ii~~L~~~M~~aS~~l~FE~Aa~~RD~I~aL~~i~~~q~ 236 (616)
T Consensus 164 ~pc~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (601)
T TIGR00194 164 RPCLYYQLGRCLGPCVGGITEEEYRELLEKVELFLNGGPDEVLKELEEKLEKASENLEFEEAARLRDQIKALLELNEKQK 243 (601)
T ss_pred CCEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 74110123334433431010467899999999986276568999999888876642127789999999999988766665
Q ss_pred CCC----CCCCHHHHCCCCCEEEEEEEEEECCEEEECC-CCCCCCCCCCCHHHHHHHHHHHHHCC----CCCCHHHEECC
Q ss_conf 024----5420111000188347889984247454101-13566777899789888777543213----78981231026
Q gi|255764496|r 237 SIY----NRMDCFSLYHNKNLACIQTCFFHFGQNRGTC-TFFLKTDSESTNAQILSYFLRQFYTD----KPCPENILLSE 307 (616)
Q Consensus 237 v~~----~d~Dvi~i~~~~~~~~I~vl~vR~G~i~g~~-~f~~~~~~~~~~~eil~~fI~qyY~~----~~iP~~Iiv~~ 307 (616)
T Consensus 244 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 323 (601)
T TIGR00194 244 VSLTKDLLDLDIIGYAFDGGVAAVVVLFIRDGKLLGKDGSFDFSLPGGTDLDELLETFLGQFYLSGYENRLLPSEILLPL 323 (601)
T ss_pred HHHHHHHCCCCEEEEECCCCCEEEEEEEEECCCEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECC
T ss_conf 54322100211124421676123454320045100000111101135551578999999987741000113640103112
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 888578766654320134333212565526678999999999865543233433---89999999875156643516999
Q gi|255764496|r 308 EAEETSLLEISFFKQYGYKVKITVPKQGEKRKIIEQALINAHRSHTQKLSTEIS---HQMILKDFTKKFALPHIPKRIEI 384 (616)
Q Consensus 308 ~~~~~~~l~~~L~~k~g~kV~i~~P~rG~kk~Ll~lA~~NA~~~l~~k~~~~~~---~~~~l~~Lk~~L~L~~~p~rIE~ 384 (616)
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 403 (601)
T TIGR00194 324 SLEDLKLLEDLLSELRGRKVNVHLPKKGDKKKLLELAIKNAKLALKEKWSQFERNLDKTEALEDLAELLNLPELPKRLEG 403 (601)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEE
T ss_conf 10016789999875304401220265413789999988667888877653221035788899999997423333201000
Q ss_pred EECCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCC--HHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCC
Q ss_conf 70744377540488888516872803232110244445541--1689989999999977531-31112333333334545
Q gi|255764496|r 385 YDNSHIMGCSAVGCMVVVGENGFVKNQYRKFNLHPNDVKTQ--DDCAMMRMVLERRFSQLIK-NEENLNFHPKKQEYSFP 461 (616)
Q Consensus 385 fDiSh~~G~~~Vas~Vvf~~g~~~K~~YR~f~Ik~~~v~~~--DD~~~m~Evi~RR~~r~~~-~~~~l~~~~~~~~~~~~ 461 (616)
T Consensus 404 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~~~~~~~~~~~~~~~~g~~-------------~~ 470 (601)
T TIGR00194 404 FDISHLDGSNTVGSLVVFEDGKPLKASYRRYNLKNPSLTGGESDDYAALREVLRRRYSSILKGEN-------------NL 470 (601)
T ss_pred EEHHHCCCCCCHHEEEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-------------CC
T ss_conf 00000133210100123304530123322101367555676531578899999987655431423-------------47
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCC--CCCCCEEEEECCCCCCCCCEEEECCCCCEEEE--CCCCHHHHHHHHHHHHH
Q ss_conf 798489980985899999999997588--77871899971877676634898179834885--79989999999887877
Q gi|255764496|r 462 SWPDVVILDGGKGQLSAAQGVLKKLNV--ENRITIISIAKGPKRSAGMEKFFVKKGEALVL--NMRDPILYFIQRLRDEA 537 (616)
Q Consensus 462 ~~PDLilIDGGkgQln~a~~vl~~l~i--~~~i~viglaK~~~r~~~~e~~~~~~~~~i~l--~~~~~~l~~Lq~iRDEa 537 (616)
T Consensus 471 p~~~~~~~dgg~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (601)
T TIGR00194 471 PLPDLLLIDGGKGQLNAALEVLKSLGVWDLNKPPVIGLAKGAKRHEG-DILLLGDPEPVNLDLPPNSPALHLLQHLRDEA 549 (601)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCC-CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 86643786176035789999986224444322102210012210024-30210255554433466641578888776665
Q ss_pred HHHHHHHHHHHHHHH-CCCCHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHH
Q ss_conf 887889899864321-477100488879899999999808889899389888
Q gi|255764496|r 538 HRFAITTHRKRRKKA-AYSPLDEINGIGPLRKRLLLQSFGTVKMISRSSPET 588 (616)
Q Consensus 538 HRFAi~~hRk~r~k~-~~S~Ld~I~GIG~k~~~~Ll~~Fgs~~~i~~As~ee 588 (616)
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 601 (601)
T TIGR00194 550 HRFAIGFHRKKRLKASLQSPLDKIPGVGEKRKKKLLKHFGSLDGIKEASVEE 601 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 5565443455555555554433203554678999998741132333320249