HHsearch alignment for GI: 255764496 and conserved domain: TIGR00575

>TIGR00575 dnlj DNA ligase, NAD-dependent; InterPro: IPR001679 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This family is predominantly composed of NAD-dependent bacterial DNA ligases. They are proteins of about 75 to 85 Kd whose sequence is well conserved , . They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair.
Probab=98.57  E-value=8.1e-08  Score=75.93  Aligned_cols=56  Identities=34%  Similarity=0.529  Sum_probs=53.2

Q ss_pred             HCCCCCCHHHHHHHHHHHCCHHHHHHCCHH-----------HHHHCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             048887989999999980888989938988-----------88627899989999999985478678
Q gi|255764496|r  558 DEINGIGPLRKRLLLQSFGTVKMISRSSPE-----------TLASIEGISKKIACKIYNHFHKNTSH  613 (616)
Q Consensus       558 d~I~GIG~k~~~~Ll~~Fgs~~~i~~As~e-----------eL~~v~gi~~~~A~~I~~~l~~~~~~  613 (616)
T Consensus       524 LGIr~VG~~~A~~La~~f~tl~~L~~A~~e~~~~~~~f~~s~L~~~~g~G~~vA~~~~~~F~~~~~~  590 (706)
T TIGR00575       524 LGIRHVGEVTAKLLAKHFGTLDKLKAASLETLESIYQFDRSELLSVEGVGPKVAESIVNFFHDPNNL  590 (706)
T ss_pred             CCCHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             2860357999999998558868998508216778875160556410140278999999987120001