HHsearch alignment for GI: 255764496 and conserved domain: TIGR01448

>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=96.66  E-value=0.0019  Score=44.48  Aligned_cols=145  Identities=21%  Similarity=0.179  Sum_probs=77.2

Q ss_pred             HHHHHHCCCCCCCCC--CCCCCH---HHHHHHHHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHCCCCC-CCEE
Q ss_conf             654320134333212--565526---67899999999986554323--3------43389999999875156643-5169
Q gi|255764496|r  317 ISFFKQYGYKVKITV--PKQGEK---RKIIEQALINAHRSHTQKLS--T------EISHQMILKDFTKKFALPHI-PKRI  382 (616)
Q Consensus       317 ~~L~~k~g~kV~i~~--P~rG~k---k~Ll~lA~~NA~~~l~~k~~--~------~~~~~~~l~~Lk~~L~L~~~-p~rI  382 (616)
T Consensus       357 ~AL~~~~~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAAkRl~E~TG~~a~TIHRL  436 (769)
T TIGR01448       357 EALKTAIQDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAAKRLAEVTGLEALTIHRL  436 (769)
T ss_pred             HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCCCHHHHHHHH
T ss_conf             99999860948998577888616899999999987168775531245677648873774378885110026212347786


Q ss_pred             EEEECCCCCCCCCEEEEEEEECCCCC-HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             99707443775404888885168728-03232110244445541168998999999997753131112333333334545
Q gi|255764496|r  383 EIYDNSHIMGCSAVGCMVVVGENGFV-KNQYRKFNLHPNDVKTQDDCAMMRMVLERRFSQLIKNEENLNFHPKKQEYSFP  461 (616)
Q Consensus       383 E~fDiSh~~G~~~Vas~Vvf~~g~~~-K~~YR~f~Ik~~~v~~~DD~~~m~Evi~RR~~r~~~~~~~l~~~~~~~~~~~~  461 (616)
T Consensus       437 lG~~~~----------------~~~~~k~~~~~~~~---DL~IvDE~SM~Dt~L~~~lL~a-------------------  478 (769)
T TIGR01448       437 LGYGSD----------------TKSENKNLEDPIDA---DLLIVDESSMVDTWLASSLLAA-------------------  478 (769)
T ss_pred             HCCCCC----------------CCCCCHHHCCCCCC---CEEEEECCCHHHHHHHHHHHHH-------------------
T ss_conf             368988----------------87321101134787---7699814621889999999861-------------------


Q ss_pred             CCCC--EEEEECCHHHHHHH--HHHHHHCCCCCCCCEEEEECC
Q ss_conf             7984--89980985899999--999997588778718999718
Q gi|255764496|r  462 SWPD--VVILDGGKGQLSAA--QGVLKKLNVENRITIISIAKG  500 (616)
Q Consensus       462 ~~PD--LilIDGGkgQln~a--~~vl~~l~i~~~i~viglaK~  500 (616)
T Consensus       479 -~P~~a~lllVGD~DQLPSV~pG~VL~DLi~s~~iP~~~LT~v  520 (769)
T TIGR01448       479 -VPDHARLLLVGDADQLPSVGPGQVLKDLIQSKVIPVTRLTKV  520 (769)
T ss_pred             -CCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEECCCE
T ss_conf             -797777988837688898864408999984688661212111